CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = M : Mut = H125R

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
M125H125RnonsyncAtcGt2362290.97033926895-26897
M125H125RnonsyncATcGG23630.012711926895-26897
M125H125RnonsynCATAGG23620.0084745826895-26897
M125H125RnonsyncATcGC23620.0084745826895-26897

Details of the mutation H125R within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
M125H125RcAtcGt229236All0.000044
M125H125RcATcGG3236All0.000001
M125H125RCATAGG2236All0
M125H125RcATcGC2236All0
M125H125RcAtcGt6875B.1.1.70.000061
M125H125RcATcGG375B.1.1.70.000003
M125H125RcATcGC275B.1.1.70.000002
M125H125RCATAGG275B.1.1.70.000002
M125H125RcAtcGt1717B.1.20.00015
M125H125RcAtcGt1313B.1.617.20.000049
M125H125RcAtcGt1010B.1.1.4160.00905
M125H125RcAtcGt1010B.1.3150.060606
M125H125RcAtcGt99AY.40.000014
M125H125RcAtcGt77B.1.1.5190.000278
M125H125RcAtcGt77B.1.6320.04698
M125H125RcAtcGt55AY.440.00003
M125H125RcAtcGt55AY.640.002976
M125H125RcAtcGt55B.1.1.1410.01006
M125H125RcAtcGt44AY.1030.000025
M125H125RcAtcGt44B.1.177.90.005326
M125H125RcAtcGt44P.10.000063
M125H125RcAtcGt33AY.1050.001929
M125H125RcAtcGt33AY.4.20.000065
M125H125RcAtcGt33AY.430.000013
M125H125RcAtcGt33AY.870.002498
M125H125RcAtcGt33B.10.000027
M125H125RcAtcGt33B.1.3510.000089
M125H125RcAtcGt22AY.1020.000053
M125H125RcAtcGt22AY.1100.000225
M125H125RcAtcGt22AY.130.000322
M125H125RcAtcGt22AY.290.000032
M125H125RcAtcGt22AY.30.00002
M125H125RcAtcGt22AY.330.000134
M125H125RcAtcGt22AY.60.000082
M125H125RcAtcGt22AY.75.10.000361
M125H125RcAtcGt22B.1.10.000036
M125H125RcAtcGt22B.1.1770.000026
M125H125RcAtcGt22B.1.5750.000607
M125H125RcAtcGt11AY.1110.000183
M125H125RcAtcGt11AY.1140.000231
M125H125RcAtcGt11AY.240.000431
M125H125RcAtcGt11AY.350.000233
M125H125RcAtcGt11AY.370.000316
M125H125RcAtcGt11AY.39.10.00004
M125H125RcAtcGt11AY.450.000122
M125H125RcAtcGt11AY.50.000021
M125H125RcAtcGt11AY.620.000436
M125H125RcAtcGt11B.1.1.1890.001513
M125H125RcAtcGt11B.1.1.3290.003846
M125H125RcAtcGt11B.1.1.370.000193
M125H125RcAtcGt11B.1.1.480.002874
M125H125RcAtcGt11B.1.1260.001276
M125H125RcAtcGt11B.1.3110.000275
M125H125RcAtcGt11B.1.3360.002439
M125H125RcAtcGt11B.1.3690.000285
M125H125RcAtcGt11B.1.4290.000024
M125H125RcAtcGt11B.1.5260.000024
M125H125RcAtcGt11B.1.5960.000087
M125H125RcAtcGt11B.6.60.000889

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.