CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = M : Mut = G202G

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
M202G202GsynggCggT486245820.94241127126-27128
M202G202GsynggCggA48622780.057178127126-27128
M202G202GsynggCggG486220.00041135327126-27128

Details of the mutation G202G within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
M202G202GggCggT45824862All0.000876
M202G202GggCggA2784862All0.000053
M202G202GggCggG24862All0
M202G202GggCggT11151115B.1.617.20.004198
M202G202GggCggT620689B.1.1.70.000555
M202G202GggCggA69689B.1.1.70.000062
M202G202GggCggT529529AY.350.123281
M202G202GggCggT293293AY.820.397558
M202G202GggCggT291292B.1.20.002562
M202G202GggCggA1292B.1.20.000009
M202G202GggCggT166175AY.430.000735
M202G202GggCggA9175AY.430.00004
M202G202GggCggA141142B.1.6210.012481
M202G202GggCggT1142B.1.6210.000089
M202G202GggCggT135137AY.40.00021
M202G202GggCggA2137AY.40.000003
M202G202GggCggT113116B.10.001035
M202G202GggCggA3116B.10.000027
M202G202GggCggT9394AY.440.000566
M202G202GggCggA194AY.440.000006
M202G202GggCggT9292AY.250.000553
M202G202GggCggT8888B.1.5250.009958
M202G202GggCggT5252B.1.2580.00346
M202G202GggCggT4546B.1.10.000816
M202G202GggCggA146B.1.10.000018
M202G202GggCggT4646B.1.1.2131
M202G202GggCggT4141B.1.6161
M202G202GggCggT3737AY.16.10.017387
M202G202GggCggT3535AY.30.000348
M202G202GggCggT3334AY.1030.000205
M202G202GggCggA134AY.1030.000006
M202G202GggCggT3233AY.390.000791
M202G202GggCggA133AY.390.000025
M202G202GggCggT2828AY.450.003407
M202G202GggCggT2828AY.480.013023
M202G202GggCggT2628P.10.00041
M202G202GggCggA228P.10.000032
M202G202GggCggT2323B.1.4060.139394
M202G202GggCggT2323P.1.70.007344
M202G202GggCggT2222C.390.415094
M202G202GggCggT2121AY.1200.000781
M202G202GggCggA1821AY.290.000284
M202G202GggCggT321AY.290.000047
M202G202GggCggT1818AY.1080.019846
M202G202GggCggT1818AY.230.001255
M202G202GggCggA1717A.210.047091
M202G202GggCggT1717B.1.1770.000224
M202G202GggCggT1717B.1.177.210.0013
M202G202GggCggT1717B.1.36.390.037694
M202G202GggCggT1516B0.001917
M202G202GggCggA116B0.000128
M202G202GggCggT1515B.1.1.3180.004526
M202G202GggCggT1414B.1.4290.000329
M202G202GggCggT1313AY.50.000268
M202G202GggCggT1212AY.420.000483
M202G202GggCggT1212B.1.1.5190.000477
M202G202GggCggT1212B.1.5260.000282
M202G202GggCggT1111AY.200.000428
M202G202GggCggT1111AY.470.000342
M202G202GggCggT1010B.1.617.10.00129
M202G202GggCggT99AY.1020.000239
M202G202GggCggT99AY.190.010262
M202G202GggCggT99B.1.1600.000281
M202G202GggCggT99C.370.001045
M202G202GggCggT88AY.1160.002294
M202G202GggCggT88B.1.360.001167
M202G202GggCggT77AY.240.003017
M202G202GggCggT77AY.260.000198
M202G202GggCggT77B.1.1.2160.006233
M202G202GggCggT77B.1.258.170.000728
M202G202GggCggT77B.1.6370.000512
M202G202GggCggT57D.20.000375
M202G202GggCggG17D.20.000075
M202G202GggCggA17D.20.000075
M202G202GggCggT66AY.4.20.00013
M202G202GggCggT66AY.780.009245
M202G202GggCggT66B.1.1.10.00196
M202G202GggCggT66B.1.2340.000792
M202G202GggCggT55AY.5.30.001687
M202G202GggCggT55AY.9.20.000184
M202G202GggCggT55AY.900.003422
M202G202GggCggT55B.1.1.2220.00102
M202G202GggCggT55B.1.1.2910.003712
M202G202GggCggT55B.1.3510.000149
M202G202GggCggT55Q.80.000825
M202G202GggCggT44A.20.002647
M202G202GggCggT44AY.1190.000141
M202G202GggCggT44AY.130.000644
M202G202GggCggT44AY.140.000352
M202G202GggCggT44AY.60.000165
M202G202GggCggT34AY.980.000237
M202G202GggCggG14AY.980.000079
M202G202GggCggT44B.1.2210.000284
M202G202GggCggT44B.1.351.20.00121
M202G202GggCggT44B.1.4000.001716
M202G202GggCggT44B.1.4270.000202
M202G202GggCggT34B.1.5650.002431
M202G202GggCggA14B.1.5650.00081
M202G202GggCggT33AD.20.000657
M202G202GggCggT33AY.1170.000254
M202G202GggCggT33AY.1210.000406
M202G202GggCggT33AY.5.40.00083
M202G202GggCggT33AY.610.000314
M202G202GggCggT33AY.680.000821
M202G202GggCggT33AY.750.000168
M202G202GggCggT33AY.880.002653
M202G202GggCggT33AY.99.20.000276
M202G202GggCggT33B.1.1.5210.016043
M202G202GggCggT33B.1.2320.001612
M202G202GggCggT33B.1.2430.000209
M202G202GggCggT33B.1.258.30.005025
M202G202GggCggT33B.1.3460.003932
M202G202GggCggA33P.1.150.000697
M202G202GggCggT22AY.1000.000092
M202G202GggCggT22AY.330.000134
M202G202GggCggT22AY.340.000194
M202G202GggCggT22AY.4.50.000215
M202G202GggCggT22AY.460.000208
M202G202GggCggT22AY.730.001331
M202G202GggCggT22AY.740.000231
M202G202GggCggT22AY.9.10.000167
M202G202GggCggT22B.1.1.2140.000111
M202G202GggCggT22B.1.1.3060.000877
M202G202GggCggT22B.1.1.3160.00185
M202G202GggCggT22B.1.177.550.004662
M202G202GggCggT22B.1.177.570.000562
M202G202GggCggT22B.1.177.70.00033
M202G202GggCggT22B.1.177.860.000367
M202G202GggCggT22B.1.2060.001631
M202G202GggCggT22B.1.2410.001623
M202G202GggCggT22B.1.36.290.001035
M202G202GggCggT22B.1.3620.003082
M202G202GggCggT22B.1.4560.006536
M202G202GggCggT22B.1.5960.000174
M202G202GggCggT22P.1.100.000539
M202G202GggCggT22P.20.000373
M202G202GggCggA12P.30.001595
M202G202GggCggT12P.30.001595
M202G202GggCggT11A.10.000282
M202G202GggCggT11A.50.001923
M202G202GggCggT11AU.10.001266
M202G202GggCggT11AY.100.00053
M202G202GggCggA11AY.1050.000643
M202G202GggCggT11AY.1090.00074
M202G202GggCggT11AY.1130.000142
M202G202GggCggA11AY.120.000316
M202G202GggCggT11AY.120.10.000321
M202G202GggCggT11AY.320.000532
M202G202GggCggT11AY.360.000148
M202G202GggCggT11AY.380.000499
M202G202GggCggT11AY.39.10.00004
M202G202GggCggT11AY.4.40.000409
M202G202GggCggT11AY.410.000294
M202G202GggCggT11AY.46.60.000072
M202G202GggCggT11AY.510.000909
M202G202GggCggT11AY.550.000917
M202G202GggCggT11AY.590.00053
M202G202GggCggT11AY.620.000436
M202G202GggCggT11AY.650.000533
M202G202GggCggT11AY.7.10.000113
M202G202GggCggT11AY.75.10.00018
M202G202GggCggT11AY.760.004831
M202G202GggCggT11AY.90.000068
M202G202GggCggT11AY.920.000287
M202G202GggCggT11AY.930.000273
M202G202GggCggT11AY.98.10.000048
M202G202GggCggT11B.1.1.2200.001859
M202G202GggCggT11B.1.1.2630.001558
M202G202GggCggT11B.1.1.280.000311
M202G202GggCggT11B.1.1.3330.001076
M202G202GggCggT11B.1.1.4800.025
M202G202GggCggA11B.1.1.5230.001563
M202G202GggCggT11B.1.1.630.000386
M202G202GggCggT11B.1.1.700.000341
M202G202GggCggT11B.1.1150.021739
M202G202GggCggA11B.1.1260.001276
M202G202GggCggT11B.1.1570.002985
M202G202GggCggT11B.1.160.100.008065
M202G202GggCggT11B.1.177.300.002513
M202G202GggCggA11B.1.177.320.00135
M202G202GggCggT11B.1.177.90.001332
M202G202GggCggT11B.1.2390.001221
M202G202GggCggT11B.1.258.110.000396
M202G202GggCggT11B.1.3110.000275
M202G202GggCggT11B.1.36.220.001208
M202G202GggCggT11B.1.4280.00102
M202G202GggCggT11B.1.438.10.000107
M202G202GggCggT11B.1.466.20.000391
M202G202GggCggT11B.1.5640.000426
M202G202GggCggT11B.1.5760.000907
M202G202GggCggT11B.1.5950.000261
M202G202GggCggT11B.1.6090.000479
M202G202GggCggT11B.1.621.10.000506
M202G202GggCggT11B.30.000831
M202G202GggCggT11B.310.003731
M202G202GggCggT11P.1.10.000318
M202G202GggCggT11P.1.120.000484
M202G202GggCggT11P.1.140.000048
M202G202GggCggT11P.1.90.004808
M202G202GggCggT11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.