CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = M : Mut = F28F

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
M28F28FsynttCttT1365113651126604-26606

Details of the mutation F28F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
M28F28FttCttT1365113651All0.002611
M28F28FttCttT39183918B.1.1.70.003507
M28F28FttCttT28372837AY.1190.100169
M28F28FttCttT15591559B.1.619.11
M28F28FttCttT11091109B.1.6190.966028
M28F28FttCttT482482P.1.70.153895
M28F28FttCttT374374B.10.003426
M28F28FttCttT371371AY.40.000577
M28F28FttCttT300300B.1.20.002642
M28F28FttCttT285285AY.4.2.10.042461
M28F28FttCttT275275B.1.617.20.001035
M28F28FttCttT197197AY.290.003107
M28F28FttCttT176176B.1.6210.015579
M28F28FttCttT148148AY.1030.000919
M28F28FttCttT112112AY.430.000496
M28F28FttCttT103103AY.440.000627
M28F28FttCttT8585P.10.001339
M28F28FttCttT8080AY.250.000481
M28F28FttCttT5656AY.30.000557
M28F28FttCttT4949B.1.10.000889
M28F28FttCttT4747AY.390.001161
M28F28FttCttT4040B.1.1.3060.017536
M28F28FttCttT3838AY.1020.001008
M28F28FttCttT3838B.1.1770.0005
M28F28FttCttT3737AY.1210.005007
M28F28FttCttT3232AY.1000.001472
M28F28FttCttT2828B.1.177.870.020378
M28F28FttCttT2727P.20.005039
M28F28FttCttT2424AY.4.20.000521
M28F28FttCttT2222B.1.1.5190.000874
M28F28FttCttT2222B.1.438.10.00236
M28F28FttCttT2020AY.3.10.001705
M28F28FttCttT2020AY.980.00158
M28F28FttCttT2020Q.80.003298
M28F28FttCttT1919B.1.3510.000565
M28F28FttCttT1919B.1.4270.000959
M28F28FttCttT1616B.1.4290.000376
M28F28FttCttT1515AY.1170.001268
M28F28FttCttT1515AY.680.004106
M28F28FttCttT1515B.1.5770.010309
M28F28FttCttT1414AY.230.000976
M28F28FttCttT1414AY.90.000946
M28F28FttCttT1313AY.1180.000814
M28F28FttCttT1313AY.4.50.001397
M28F28FttCttT1313B.1.1600.000405
M28F28FttCttT1313B.1.6090.006232
M28F28FttCttT1313N.90.077381
M28F28FttCttT1212P.1.150.002788
M28F28FttCttT1111AY.1200.000409
M28F28FttCttT1111AY.400.010608
M28F28FttCttT1111B.1.177.210.000841
M28F28FttCttT1010AY.690.001867
M28F28FttCttT1010B.1.2400.002156
M28F28FttCttT1010B.1.360.001459
M28F28FttCttT1010B.1.5260.000235
M28F28FttCttT99A.280.02381
M28F28FttCttT99AY.1140.00208
M28F28FttCttT99B.1.1.1740.030405
M28F28FttCttT99B.1.177.600.001966
M28F28FttCttT88AY.260.000226
M28F28FttCttT88AY.46.60.000578
M28F28FttCttT88AY.50.000165
M28F28FttCttT88B.1.5610.003176
M28F28FttCttT88B.1.5960.000697
M28F28FttCttT88C.370.000929
M28F28FttCttT88Q.30.00116
M28F28FttCttT77AY.210.013283
M28F28FttCttT77B.1.3360.017073
M28F28FttCttT77B.1.36.290.003621
M28F28FttCttT66AY.200.000233
M28F28FttCttT66AY.340.000582
M28F28FttCttT66AY.98.10.000291
M28F28FttCttT66AY.99.20.000553
M28F28FttCttT66B0.000767
M28F28FttCttT66B.1.1.2140.000333
M28F28FttCttT66P.1.140.000287
M28F28FttCttT66P.1.160.002245
M28F28FttCttT55B.1.1.3110.001791
M28F28FttCttT55B.1.1.3720.003444
M28F28FttCttT55B.1.160.260.012107
M28F28FttCttT55B.1.177.70.000824
M28F28FttCttT55B.1.2210.000355
M28F28FttCttT55B.1.2340.00066
M28F28FttCttT55B.1.2430.000348
M28F28FttCttT44AY.116.10.001246
M28F28FttCttT44AY.470.000124
M28F28FttCttT44AY.700.000834
M28F28FttCttT44B.1.177.80.00301
M28F28FttCttT44B.1.617.10.000516
M28F28FttCttT44B.280.013115
M28F28FttCttT330.166667
M28F28FttCttT33AY.450.000365
M28F28FttCttT33AY.530.000863
M28F28FttCttT33AY.540.000286
M28F28FttCttT33AY.60.000123
M28F28FttCttT33AY.9.20.00011
M28F28FttCttT33AY.910.002191
M28F28FttCttT33B.1.1.2200.005576
M28F28FttCttT33B.1.1.390.001529
M28F28FttCttT33B.1.1.4130.02069
M28F28FttCttT33B.1.1.630.001157
M28F28FttCttT33B.1.1180.020134
M28F28FttCttT33B.1.177.40.000633
M28F28FttCttT33B.1.177.730.001699
M28F28FttCttT33B.1.2560.051724
M28F28FttCttT33B.1.2580.0002
M28F28FttCttT33B.1.3110.000824
M28F28FttCttT33B.1.3490.002144
M28F28FttCttT33B.1.351.50.001799
M28F28FttCttT33B.1.3960.002117
M28F28FttCttT33B.6.30.078947
M28F28FttCttT22A0.000774
M28F28FttCttT22AY.100.00106
M28F28FttCttT22AY.1050.001286
M28F28FttCttT22AY.1100.000225
M28F28FttCttT22AY.1130.000285
M28F28FttCttT22AY.130.000322
M28F28FttCttT22AY.29.10.000441
M28F28FttCttT22AY.350.000466
M28F28FttCttT22AY.360.000296
M28F28FttCttT22AY.380.000999
M28F28FttCttT22AY.420.00008
M28F28FttCttT22AY.5.30.000675
M28F28FttCttT22AY.510.001818
M28F28FttCttT22AY.610.00021
M28F28FttCttT22AY.750.000112
M28F28FttCttT22AY.880.001768
M28F28FttCttT22AY.9.10.000167
M28F28FttCttT22AY.940.000885
M28F28FttCttT22B.1.1.1350.00939
M28F28FttCttT22B.1.1.2160.001781
M28F28FttCttT22B.1.1.2220.000408
M28F28FttCttT22B.1.1.330.000842
M28F28FttCttT22B.1.1.3480.001592
M28F28FttCttT22B.1.1.4170.005405
M28F28FttCttT22B.1.1.700.000682
M28F28FttCttT22B.1.177.560.001335
M28F28FttCttT22B.1.2410.001623
M28F28FttCttT22B.1.258.170.000208
M28F28FttCttT22B.1.351.20.000605
M28F28FttCttT22B.1.36.180.00084
M28F28FttCttT22B.1.3750.001639
M28F28FttCttT22B.1.4740.003802
M28F28FttCttT22B.1.5750.000607
M28F28FttCttT22B.1.6230.001073
M28F28FttCttT22B.1.6260.011429
M28F28FttCttT22C.290.125
M28F28FttCttT22C.36.30.001134
M28F28FttCttT22Q.10.000253
M28F28FttCttT11A.10.000282
M28F28FttCttT11A.2.20.001689
M28F28FttCttT11A.30.002096
M28F28FttCttT11A.50.001923
M28F28FttCttT11AD.20.000219
M28F28FttCttT11AY.23.10.000417
M28F28FttCttT11AY.240.000431
M28F28FttCttT11AY.39.20.001541
M28F28FttCttT11AY.460.000104
M28F28FttCttT11AY.46.10.001027
M28F28FttCttT11AY.46.30.000934
M28F28FttCttT11AY.46.40.000165
M28F28FttCttT11AY.550.000917
M28F28FttCttT11AY.590.00053
M28F28FttCttT11AY.650.000533
M28F28FttCttT11AY.660.00107
M28F28FttCttT11AY.70.000196
M28F28FttCttT11AY.7.20.000559
M28F28FttCttT11AY.870.000833
M28F28FttCttT11AY.920.000287
M28F28FttCttT11AY.930.000273
M28F28FttCttT11AY.950.000761
M28F28FttCttT11AY.99.10.001553
M28F28FttCttT11B.1.1.10.000327
M28F28FttCttT11B.1.1.100.001115
M28F28FttCttT11B.1.1.2360.006897
M28F28FttCttT11B.1.1.250.000569
M28F28FttCttT11B.1.1.2630.001558
M28F28FttCttT11B.1.1.2840.000107
M28F28FttCttT11B.1.1.3170.000412
M28F28FttCttT11B.1.1.370.000193
M28F28FttCttT11B.1.1.3890.006061
M28F28FttCttT11B.1.1.3970.002252
M28F28FttCttT11B.1.1.4350.034483
M28F28FttCttT11B.1.1.500.000679
M28F28FttCttT11B.1.1.5230.001563
M28F28FttCttT11B.1.1.5260.003546
M28F28FttCttT11B.1.1.990.02381
M28F28FttCttT11B.1.1110.001175
M28F28FttCttT11B.1.160.160.000929
M28F28FttCttT11B.1.160.220.006757
M28F28FttCttT11B.1.160.80.001289
M28F28FttCttT11B.1.177.180.00116
M28F28FttCttT11B.1.177.200.001517
M28F28FttCttT11B.1.177.320.00135
M28F28FttCttT11B.1.177.330.001645
M28F28FttCttT11B.1.177.450.000381
M28F28FttCttT11B.1.177.540.000606
M28F28FttCttT11B.1.177.570.000281
M28F28FttCttT11B.1.177.620.001192
M28F28FttCttT11B.1.177.720.00339
M28F28FttCttT11B.1.177.810.000189
M28F28FttCttT11B.1.177.860.000183
M28F28FttCttT11B.1.1900.01
M28F28FttCttT11B.1.214.20.0006
M28F28FttCttT11B.1.220.001318
M28F28FttCttT11B.1.2220.001692
M28F28FttCttT11B.1.2810.021739
M28F28FttCttT11B.1.3010.005917
M28F28FttCttT11B.1.3050.002151
M28F28FttCttT11B.1.36.10.00114
M28F28FttCttT11B.1.36.120.009615
M28F28FttCttT11B.1.3720.010989
M28F28FttCttT11B.1.4220.000812
M28F28FttCttT11B.1.4590.004082
M28F28FttCttT11B.1.466.20.000391
M28F28FttCttT11B.1.4700.001404
M28F28FttCttT11B.1.5250.000113
M28F28FttCttT11B.1.5380.008065
M28F28FttCttT11B.1.5450.014493
M28F28FttCttT11B.1.5680.001111
M28F28FttCttT11B.1.5800.004065
M28F28FttCttT11B.1.6120.002653
M28F28FttCttT11B.1.6180.004032
M28F28FttCttT11B.1.621.10.000506
M28F28FttCttT11B.1.6280.000352
M28F28FttCttT11B.1.6370.000073
M28F28FttCttT11B.1.6380.052632
M28F28FttCttT11C.360.000911
M28F28FttCttT11D.20.000075
M28F28FttCttT11N.40.004255
M28F28FttCttT11P.1.120.000484
M28F28FttCttT11P.1.20.001156
M28F28FttCttT11Q.40.000455

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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