CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = M : Mut = A2S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
M2A2SnonsynGcaTca16170160130.99029126526-26528
M2A2SnonsynGcATcT161701560.009647526526-26528
M2A2SnonsynGcATcC1617010.000061842926526-26528

Details of the mutation A2S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
M2A2SGcaTca1601316170All0.003063
M2A2SGcATcT15616170All0.00003
M2A2SGcATcC116170All0
M2A2SGcaTca76937843B.1.1.70.006887
M2A2SGcATcT1507843B.1.1.70.000134
M2A2SGcaTca12661266AY.4.20.027458
M2A2SGcaTca846846AY.40.001317
M2A2SGcaTca662662AY.110.886212
M2A2SGcaTca600601B.1.617.20.002259
M2A2SGcATcT1601B.1.617.20.000004
M2A2SGcaTca348348AY.430.001542
M2A2SGcaTca308308AY.440.001875
M2A2SGcaTca256256P.1.170.041411
M2A2SGcaTca253253D.20.018985
M2A2SGcaTca210210AY.330.014023
M2A2SGcaTca190190AY.1000.008741
M2A2SGcaTca167167AY.1030.001037
M2A2SGcaTca144144B.1.1.2100.822857
M2A2SGcaTca140140B.1.4220.113729
M2A2SGcaTca139139AY.30.001383
M2A2SGcaTca128128B.1.20.001127
M2A2SGcaTca127127AY.260.003595
M2A2SGcaTca117117B.10.001072
M2A2SGcaTca109109B.1.1770.001435
M2A2SGcaTca9393AY.250.000559
M2A2SGcaTca9292B.1.5260.002162
M2A2SGcaTca9191AY.390.002249
M2A2SGcaTca8282B.1.10.001488
M2A2SGcaTca8282P.10.001292
M2A2SGcaTca7575AY.39.10.002971
M2A2SGcaTca6565B.1.1.5190.002581
M2A2SGcaTca5959AY.4.50.006342
M2A2SGcaTca5959B.1.6370.004311
M2A2SGcaTca5656AY.470.001742
M2A2SGcaTca4545B.1.3510.001338
M2A2SGcaTca4444AY.540.004195
M2A2SGcaTca4242AY.200.001632
M2A2SGcaTca4242AY.740.004857
M2A2SGcaTca4141AY.1020.001087
M2A2SGcaTca4141AY.60.001686
M2A2SGcaTca3535AY.50.000723
M2A2SGcaTca3434AY.3.10.002899
M2A2SGcaTca3232AY.130.005151
M2A2SGcaTca2828B.1.3960.01976
M2A2SGcaTca2727AY.1190.000953
M2A2SGcaTca2727B.1.2580.001797
M2A2SGcaTca2525AY.280.047259
M2A2SGcaTca2424AY.610.002515
M2A2SGcaTca2323AY.1210.003112
M2A2SGcaTca2323AY.290.000363
M2A2SGcaTca2121AY.98.10.001017
M2A2SGcaTca2121B.1.1.2770.015933
M2A2SGcaTca2121B.1.4290.000494
M2A2SGcaTca2121B.1.6210.001859
M2A2SGcaTca1718AY.1200.000632
M2A2SGcATcT118AY.1200.000037
M2A2SGcaTca1818B.1.36.310.031524
M2A2SGcaTca1818B.1.438.10.001931
M2A2SGcaTca1717AY.920.004884
M2A2SGcaTca1717B.1.177.820.008115
M2A2SGcaTca1717Q.10.002148
M2A2SGcaTca1616AY.1060.005358
M2A2SGcaTca1616AY.750.000896
M2A2SGcaTca1515AY.420.000603
M2A2SGcaTca1515AY.450.001825
M2A2SGcaTca1414AY.230.000976
M2A2SGcaTca1314AY.90.000879
M2A2SGcATcC114AY.90.000068
M2A2SGcaTca1313AY.140.001144
M2A2SGcaTca1313AY.46.60.000939
M2A2SGcaTca1313AY.9.20.000477
M2A2SGcaTca1313B.1.3110.003569
M2A2SGcaTca1313B.1.360.001897
M2A2SGcaTca1212AY.99.20.001106
M2A2SGcaTca1212B.1.3260.090909
M2A2SGcaTca1212B.1.5250.001358
M2A2SGcaTca1111AY.1130.001566
M2A2SGcaTca1111B.1.1.3180.003319
M2A2SGcaTca1111B.1.1.4830.423077
M2A2SGcaTca1111B.1.617.10.001419
M2A2SGcaTca1010AY.1180.000626
M2A2SGcaTca1010B.1.1600.000312
M2A2SGcaTca1010P.1.140.000478
M2A2SGcaTca99AA.20.069231
M2A2SGcaTca99AY.160.003417
M2A2SGcaTca99AY.460.000937
M2A2SGcaTca99B.1.1.280.002801
M2A2SGcaTca99B.1.1.330.003788
M2A2SGcaTca99B.1.1.3690.004016
M2A2SGcaTca99B.1.258.170.000936
M2A2SGcaTca99B.1.3690.002567
M2A2SGcaTca99B.1.5950.002349
M2A2SGcaTca99P.1.10.002859
M2A2SGcaTca88AY.1170.000676
M2A2SGcaTca88AY.980.000632
M2A2SGcaTca88B.1.177.730.00453
M2A2SGcaTca78B.1.2430.000487
M2A2SGcATcT18B.1.2430.00007
M2A2SGcaTca88P.20.001493
M2A2SGcaTca77B.1.1.2430.028571
M2A2SGcaTca77B.1.1950.035176
M2A2SGcaTca77B.1.4680.04
M2A2SGcaTca66AY.710.00285
M2A2SGcaTca66AY.730.003992
M2A2SGcaTca66B.1.1.2140.000333
M2A2SGcaTca66B.1.1.2980.005172
M2A2SGcaTca66B.1.2340.000792
M2A2SGcaTca55A0.001935
M2A2SGcaTca55AY.46.50.000992
M2A2SGcaTca55AY.510.004545
M2A2SGcaTca55AY.700.001043
M2A2SGcaTca55B0.000639
M2A2SGcaTca55B.1.1.2530.012531
M2A2SGcaTca55B.1.1.2860.014493
M2A2SGcaTca55B.1.177.40.001055
M2A2SGcaTca55B.1.2210.000355
M2A2SGcaTca55B.1.466.20.001956
M2A2SGcaTca55B.1.5230.012255
M2A2SGcaTca55P.1.100.001347
M2A2SGcaTca44A.2.50.001996
M2A2SGcaTca44AD.20.000876
M2A2SGcaTca44AE.80.001956
M2A2SGcaTca44AY.100.00212
M2A2SGcaTca44AY.1100.000451
M2A2SGcaTca44AY.1110.000733
M2A2SGcaTca44AY.1160.001147
M2A2SGcaTca44AY.190.004561
M2A2SGcaTca44AY.340.000388
M2A2SGcaTca44AY.4.2.10.000596
M2A2SGcaTca44AY.690.000747
M2A2SGcaTca44AY.990.004197
M2A2SGcaTca44B.1.1.250.002274
M2A2SGcaTca44B.1.1.3060.001754
M2A2SGcaTca44B.1.214.20.002398
M2A2SGcaTca44B.1.3400.017167
M2A2SGcaTca44B.1.36.290.002069
M2A2SGcaTca44B.1.4270.000202
M2A2SGcaTca44B.1.5960.000349
M2A2SGcaTca44B.1.6270.008081
M2A2SGcaTca33AY.1080.003308
M2A2SGcaTca33AY.1140.000693
M2A2SGcaTca33AY.116.10.000934
M2A2SGcATcT33AY.220.006276
M2A2SGcaTca33AY.270.000194
M2A2SGcaTca33AY.320.001597
M2A2SGcaTca33AY.360.000445
M2A2SGcaTca33AY.46.30.002801
M2A2SGcaTca33AY.480.001395
M2A2SGcaTca33AY.7.10.000338
M2A2SGcaTca33B.1.1.2160.002671
M2A2SGcaTca33B.1.1.2220.000612
M2A2SGcaTca33B.1.1.2940.003797
M2A2SGcaTca33B.1.1.3850.013393
M2A2SGcaTca33B.1.177.210.000229
M2A2SGcaTca33B.1.4660.069767
M2A2SGcaTca33B.1.5610.001191
M2A2SGcaTca33B.1.6280.001057
M2A2SGcaTca33C.360.002732
M2A2SGcaTca33C.370.000348
M2A2SGcaTca33P.1.40.00293
M2A2SGcaTca33P.30.004785
M2A2SGcaTca33Q.70.003333
M2A2SGcaTca22A.10.000564
M2A2SGcaTca22AY.120.000632
M2A2SGcaTca22AY.16.10.00094
M2A2SGcaTca22AY.23.10.000835
M2A2SGcaTca22AY.370.000632
M2A2SGcaTca22AY.4.30.001684
M2A2SGcaTca22AY.46.10.002053
M2A2SGcaTca22AY.5.30.000675
M2A2SGcaTca22AY.5.40.000553
M2A2SGcaTca22AY.590.001059
M2A2SGcaTca22AY.620.000871
M2A2SGcaTca22AY.680.000547
M2A2SGcaTca22AY.75.10.000361
M2A2SGcaTca22AY.850.000854
M2A2SGcaTca22AY.9.10.000167
M2A2SGcaTca22AY.900.001369
M2A2SGcaTca22B.1.1.10.000653
M2A2SGcaTca22B.1.1.1640.010309
M2A2SGcaTca22B.1.1.2630.003115
M2A2SGcaTca22B.1.1.2800.006173
M2A2SGcaTca22B.1.1.3440.021505
M2A2SGcaTca22B.1.1.3480.001592
M2A2SGcaTca22B.1.1.4340.000697
M2A2SGcaTca22B.1.1.4620.017241
M2A2SGcaTca22B.1.1.500.001358
M2A2SGcaTca22B.1.1.630.000772
M2A2SGcaTca22B.1.1390.001466
M2A2SGcaTca22B.1.177.20.009091
M2A2SGcaTca22B.1.177.770.001452
M2A2SGcaTca22B.1.177.830.002963
M2A2SGcaTca22B.1.177.860.000367
M2A2SGcaTca22B.1.2320.001075
M2A2SGcaTca22B.1.2790.001027
M2A2SGcaTca22B.1.36.270.001527
M2A2SGcaTca22B.1.3750.001639
M2A2SGcaTca22B.1.4560.006536
M2A2SGcaTca22B.1.4970.00063
M2A2SGcaTca22B.1.5240.002813
M2A2SGcaTca22B.1.5760.001813
M2A2SGcaTca22B.1.617.30.00597
M2A2SGcaTca22B.1.621.10.001012
M2A2SGcaTca22C.36.30.001134
M2A2SGcaTca22P.1.150.000465
M2A2SGcaTca22P.1.160.000748
M2A2SGcaTca22P.1.20.002312
M2A2SGcaTca22XA0.044444
M2A2SGcaTca11A.2.20.001689
M2A2SGcaTca11A.2.5.20.001572
M2A2SGcaTca11A.210.00277
M2A2SGcaTca11A.23.10.000704
M2A2SGcaTca11AY.1050.000643
M2A2SGcaTca11AY.1070.000466
M2A2SGcaTca11AY.1150.005208
M2A2SGcaTca11AY.120.10.000321
M2A2SGcaTca11AY.20.000356
M2A2SGcaTca11AY.350.000233
M2A2SGcaTca11AY.4.40.000409
M2A2SGcaTca11AY.46.40.000165
M2A2SGcaTca11AY.500.000799
M2A2SGcaTca11AY.530.000288
M2A2SGcaTca11AY.580.000907
M2A2SGcaTca11AY.640.000595
M2A2SGcaTca11AY.650.000533
M2A2SGcaTca11AY.670.000464
M2A2SGcaTca11AY.770.001127
M2A2SGcaTca11AY.860.00083
M2A2SGcaTca11AY.950.000761
M2A2SGcaTca11AY.99.10.001553
M2A2SGcaTca11AZ.10.000867
M2A2SGcaTca11B.1.1.1890.001513
M2A2SGcaTca11B.1.1.2690.001353
M2A2SGcaTca11B.1.1.3110.000358
M2A2SGcaTca11B.1.1.3120.001912
M2A2SGcaTca11B.1.1.3170.000412
M2A2SGcaTca11B.1.1.3320.03125
M2A2SGcaTca11B.1.1.370.000193
M2A2SGcaTca11B.1.1.3890.006061
M2A2SGcaTca11B.1.1.390.00051
M2A2SGcaTca11B.1.1.4090.002833
M2A2SGcaTca11B.1.1.4130.006897
M2A2SGcaTca11B.1.1.4160.000905
M2A2SGcaTca11B.1.1.4170.002703
M2A2SGcaTca11B.1.1.4490.022727
M2A2SGcaTca11B.1.1.4860.001577
M2A2SGcaTca11B.1.1.5070.008696
M2A2SGcaTca11B.1.1.580.005376
M2A2SGcaTca11B.1.1.610.008772
M2A2SGcaTca11B.1.1.700.000341
M2A2SGcaTca11B.1.110.30.000718
M2A2SGcaTca11B.1.120.008
M2A2SGcaTca11B.1.1280.000635
M2A2SGcaTca11B.1.1470.000756
M2A2SGcaTca11B.1.160.280.002924
M2A2SGcaTca11B.1.160.90.007194
M2A2SGcaTca11B.1.177.50.001242
M2A2SGcaTca11B.1.177.630.002703
M2A2SGcaTca11B.1.177.650.000665
M2A2SGcaTca11B.1.177.750.001041
M2A2SGcaTca11B.1.177.810.000189
M2A2SGcaTca11B.1.177.870.000728
M2A2SGcaTca11B.1.2100.002132
M2A2SGcaTca11B.1.2190.009434
M2A2SGcaTca11B.1.2290.009709
M2A2SGcaTca11B.1.2400.000216
M2A2SGcaTca11B.1.2910.019231
M2A2SGcaTca11B.1.3050.002151
M2A2SGcaTca11B.1.3290.000608
M2A2SGcaTca11B.1.3360.002439
M2A2SGcaTca11B.1.3460.001311
M2A2SGcaTca11B.1.351.50.0006
M2A2SGcaTca11B.1.36.10.00114
M2A2SGcaTca11B.1.36.350.002604
M2A2SGcaTca11B.1.3990.001934
M2A2SGcaTca11B.1.4080.00369
M2A2SGcaTca11B.1.4110.003704
M2A2SGcaTca11B.1.4320.011236
M2A2SGcaTca11B.1.4360.001029
M2A2SGcaTca11B.1.5510.00129
M2A2SGcaTca11B.1.5640.000426
M2A2SGcaTca11B.1.5680.001111
M2A2SGcaTca11B.1.5710.009709
M2A2SGcaTca11B.1.575.10.002439
M2A2SGcaTca11B.1.5870.001898
M2A2SGcaTca11B.1.5990.00365
M2A2SGcaTca11B.1.6010.030303
M2A2SGcaTca11B.1.619.10.000641
M2A2SGcaTca11B.1.6300.005236
M2A2SGcaTca11B.270.015385
M2A2SGcaTca11B.550.00295
M2A2SGcaTca11B.6.60.000889
M2A2SGcaTca11C.130.025641
M2A2SGcaTca11C.300.001727
M2A2SGcaTca11P.1.17.10.000875
M2A2SGcaTca11P.1.70.000319
M2A2SGcaTca11P.1.80.004785
M2A2SGcaTca11Q.30.000145
M2A2SGcaTca11Q.40.000455
M2A2SGcaTca11Q.80.000165
M2A2SGcaTca11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.