CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = M : Mut = A2E

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
M2A2EnonsyngCagAa28270.96428626526-26528
M2A2EnonsyngCAgAG2810.035714326526-26528

Details of the mutation A2E within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
M2A2EgCagAa2728All0.000005
M2A2EgCAgAG128All0
M2A2EgCagAa66AY.40.000009
M2A2EgCagAa44B.1.20.000035
M2A2EgCagAa22AY.430.000009
M2A2EgCagAa22AY.46.20.001271
M2A2EgCagAa22B.1.617.20.000008
M2A2EgCagAa110.055556
M2A2EgCagAa11AY.1010.00049
M2A2EgCagAa11AY.1020.000027
M2A2EgCagAa11AY.1030.000006
M2A2EgCagAa11AY.1100.000113
M2A2EgCagAa11AY.200.000039
M2A2EgCagAa11AY.290.000016
M2A2EgCagAa11AY.50.000021
M2A2EgCAgAG11B.10.000009
M2A2EgCagAa11B.1.351.20.000303
M2A2EgCagAa11B.1.5640.000426
M2A2EgCagAa11B.1.780.008547

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.