CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = M : CodonNum = 93 & Codon = ctG

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
M93L93LsynctCctG1953751690740.86538226799-26801

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
M93L93LctCctG169074195375All0.032337
M93L93LctCctG7504675226B.1.1770.988175
M93L93LctCctG1256712570B.1.177.210.961
M93L93LctCctG65756576B.1.177.120.997421
M93L93LctCctG59735979B.1.177.70.984669
M93L93LctCctG205376B.1.177.860.003669
M93L93LctCctG52735274B.1.177.810.998296
M93L93LctCctG47304736B.1.177.40.998312
M93L93LctCctG45724572B.1.177.600.998689
M93L93LctCctG35563557B.1.177.570.999157
M93L93LctCctG1083520B.1.1.70.000097
M93L93LctCctG26192619B.1.177.450.998475
M93L93LctCctG20812092B.1.177.820.993317
M93L93LctCctG21993AY.40.000003
M93L93LctCctG18731875B.1.177.440.971977
M93L93LctCctG10931676B.10.010011
M93L93LctCctG16461646B.1.177.540.998181
M93L93LctCctG15791580B.1.177.150.996215
M93L93LctCctG15051505B.1.177.161
M93L93LctCctG15031503B.1.177.651
M93L93LctCctG14981498B.1.177.561
M93L93LctCctG14461446B.1.177.350.999309
M93L93LctCctG13741375B.1.177.770.997821
M93L93LctCctG13731373B.1.177.870.999272
M93L93LctCctG13291329B.1.177.81
M93L93LctCctG12791283B.1.177.730.724236
M93L93LctCctG12091210B.1.177.170.992611
M93L93LctCctG11391139B.1.177.101
M93L93LctCctG11181118B.1.177.421
M93L93LctCctG10891089B.1.177.461
M93L93LctCctG992994B.1.177.60.96875
M93L93LctCctG955955B.1.177.750.993757
M93L93LctCctG862862B.1.177.181
M93L93LctCctG835835B.1.177.620.995232
M93L93LctCctG41824B.1.617.20.000154
M93L93LctCctG805805B.1.177.51
M93L93LctCctG772772B.1.177.241
M93L93LctCctG750750B.1.177.580.998668
M93L93LctCctG750750B.1.177.90.998668
M93L93LctCctG739739W.40.998649
M93L93LctCctG736738B.1.177.320.993252
M93L93LctCctG699699B.1.177.191
M93L93LctCctG674674B.1.177.691
M93L93LctCctG674674B.1.177.830.998519
M93L93LctCctG659659B.1.177.201
M93L93LctCctG653653B.1.177.430.964549
M93L93LctCctG607607B.1.177.330.998355
M93L93LctCctG5590AY.440.00003
M93L93LctCctG588588B.1.177.110.998302
M93L93LctCctG567567B.1.177.520.996485
M93L93LctCctG523523B.1.177.801
M93L93LctCctG64484AY.1030.000397
M93L93LctCctG2454AY.430.000009
M93L93LctCctG381429B.1.177.550.888112
M93L93LctCctG427427B.1.177.791
M93L93LctCctG416416B.1.177.530.995215
M93L93LctCctG400400B.1.177.411
M93L93LctCctG399399B.1.177.760.995012
M93L93LctCctG398398B.1.177.301
M93L93LctCctG162395B.1.10.002939
M93L93LctCctG23378B.1.20.000203
M93L93LctCctG370370B.1.177.631
M93L93LctCctG320320B.1.177.481
M93L93LctCctG313314Z.10.904624
M93L93LctCctG297300B.1.177.230.961165
M93L93LctCctG295295B.1.177.721
M93L93LctCctG2295P.10.000032
M93L93LctCctG259259U.31
M93L93LctCctG1232B.1.3510.00003
M93L93LctCctG198220B.1.177.20.9
M93L93LctCctG218218B.1.177.510.995434
M93L93LctCctG212212B.1.177.500.995305
M93L93LctCctG207207W.21
M93L93LctCctG194194B.1.177.401
M93L93LctCctG190190W.31
M93L93LctCctG184184B.1.177.851
M93L93LctCctG63177B.1.2210.004475
M93L93LctCctG167167B.1.177.700.988166
M93L93LctCctG164164B.1.177.141
M93L93LctCctG80159B.1.1600.002495
M93L93LctCctG150150B.1.177.841
M93L93LctCctG143143B.1.177.261
M93L93LctCctG104139B.1.2580.006921
M93L93LctCctG138138AA.11
M93L93LctCctG135135B.1.177.281
M93L93LctCctG131131B.1.177.31
M93L93LctCctG131131B.1.177.671
M93L93LctCctG130130AA.21
M93L93LctCctG115115W.11
M93L93LctCctG114114B.1.160.300.339286
M93L93LctCctG1112B.1.1.3170.000412
M93L93LctCctG112112U.20.982456
M93L93LctCctG110110AA.41
M93L93LctCctG109109AA.71
M93L93LctCctG92107AY.1200.00342
M93L93LctCctG7107B.1.2400.001509
M93L93LctCctG12106AY.230.000837
M93L93LctCctG106106B.1.177.271
M93L93LctCctG103103B.1.177.781
M93L93LctCctG9999B.1.177.711
M93L93LctCctG9696B.1.177.381
M93L93LctCctG186B.1.2430.00007
M93L93LctCctG8181B.1.177.881
M93L93LctCctG7979B.1.177.310.908046
M93L93LctCctG7878U.11
M93L93LctCctG7878Y.11
M93L93LctCctG7777B.1.177.471
M93L93LctCctG6767B.1.177.251
M93L93LctCctG6666B.1.177.681
M93L93LctCctG6666B.1.177.741
M93L93LctCctG6565B.1.177.391
M93L93LctCctG265B.1.5960.000174
M93L93LctCctG6262AA.51
M93L93LctCctG6262AA.61
M93L93LctCctG6262B.1.177.361
M93L93LctCctG6262B.1.177.591
M93L93LctCctG2554B.1.360.003648
M93L93LctCctG151B.1.1260.001276
M93L93LctCctG147AY.4.20.000022
M93L93LctCctG4545AA.81
M93L93LctCctG4444V.11
M93L93LctCctG4141B.1.177.891
M93L93LctCctG3737AA.31
M93L93LctCctG3737B.1.177.371
M93L93LctCctG3131V.21
M93L93LctCctG3030B.1.160.200.267857
M93L93LctCctG2727B.1.177.491
M93L93LctCctG126AY.130.000161
M93L93LctCctG126B.1.1.3850.004464
M93L93LctCctG2424B.1.177.661
M93L93LctCctG124Q.30.000145
M93L93LctCctG2323B.1.177.611
M93L93LctCctG422B.1.160.160.003717
M93L93LctCctG1618B.1.1.390.008155
M93L93LctCctG117Q.10.000126
M93L93LctCctG1016B0.001278
M93L93LctCctG516B.1.1.370.000964
M93L93LctCctG1414B.1.177.290.933333
M93L93LctCctG1313B.1.177.340.684211
M93L93LctCctG112AY.460.000104
M93L93LctCctG112AY.90.000068
M93L93LctCctG1212B.1.160.280.035088
M93L93LctCctG1111B.1.177.641
M93L93LctCctG211P.20.000373
M93L93LctCctG79B.1.1.700.002387
M93L93LctCctG49B.1.5090.003463
M93L93LctCctG19B.1.5750.000303
M93L93LctCctG19B.1.5950.000261
M93L93LctCctG18A.2.50.000499
M93L93LctCctG88B.1.160.320.034335
M93L93LctCctG58B.1.258.110.001982
M93L93LctCctG28B.1.258.170.000208
M93L93LctCctG18B.1.6090.000479
M93L93LctCctG170.055556
M93L93LctCctG57B.1.36.390.011086
M93L93LctCctG16AD.20.000219
M93L93LctCctG56B.1.416.10.007812
M93L93LctCctG15B.1.1.10.000327
M93L93LctCctG45B.1.1.1700.004988
M93L93LctCctG15B.1.617.10.000129
M93L93LctCctG14B.1.1.3720.000689
M93L93LctCctG44B.1.4730.076923
M93L93LctCctG24P.1.120.000968
M93L93LctCctG23A0.000774
M93L93LctCctG33AP.10.004505
M93L93LctCctG13B.1.1.250.000569
M93L93LctCctG33B.1.1.3110.001074
M93L93LctCctG33B.1.1.3150.025424
M93L93LctCctG23B.1.1.5210.010695
M93L93LctCctG33B.1.160.140.006356
M93L93LctCctG23B.1.36.170.000988
M93L93LctCctG33B.1.3750.002459
M93L93LctCctG12A.210.00277
M93L93LctCctG12B.1.1.1890.001513
M93L93LctCctG22B.1.160.100.016129
M93L93LctCctG22B.1.2360.004107
M93L93LctCctG12B.1.5400.009709
M93L93LctCctG22C.300.003454
M93L93LctCctG11AF.10.037037
M93L93LctCctG11B.1.1.4090.002833
M93L93LctCctG11B.1.1.470.005348
M93L93LctCctG11B.1.160.120.00641
M93L93LctCctG11B.1.2810.021739
M93L93LctCctG11B.1.3260.007576
M93L93LctCctG11B.1.36.350.002604
M93L93LctCctG11B.1.36.90.003215
M93L93LctCctG11B.1.3670.000792
M93L93LctCctG11B.1.3790.017241
M93L93LctCctG11B.1.3890.001002
M93L93LctCctG11B.1.3910.001127
M93L93LctCctG11B.1.5760.000907
M93L93LctCctG11B.1.5810.009434
M93L93LctCctG11B.1.5990.00365
M93L93LctCctG11K.10.02381

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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