CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
M | 93 | L93L | syn | ctC | ctG | 195375 | 169074 | 0.865382 | 26799-26801 | |
M | 93 | L93L | syn | ctC | ctT | 195375 | 26175 | 0.133973 | 26799-26801 | |
M | 93 | L93L | syn | ctC | ctA | 195375 | 117 | 0.000598848 | 26799-26801 | |
M | 93 | L93L | syn | CtC | TtG | 195375 | 6 | 0.0000307102 | 26799-26801 | |
M | 93 | L93L | syn | CtC | TtA | 195375 | 3 | 0.0000153551 | 26799-26801 | |
M | 93 | L93F | nonsyn | Ctc | Ttc | 263 | 257 | 0.977186 | 26799-26801 | |
M | 93 | L93F | nonsyn | CtC | TtT | 263 | 6 | 0.0228137 | 26799-26801 | |
M | 93 | L93del | del | CTC | --- | 246 | 246 | 1 | 26799-26801 | |
M | 93 | L93I | nonsyn | Ctc | Atc | 70 | 67 | 0.957143 | 26799-26801 | |
M | 93 | L93I | nonsyn | CtC | AtT | 70 | 2 | 0.0285714 | 26799-26801 | |
M | 93 | L93I | nonsyn | CtC | AtA | 70 | 1 | 0.0142857 | 26799-26801 | |
M | 93 | L93P | nonsyn | cTc | cCc | 17 | 16 | 0.941176 | 26799-26801 | |
M | 93 | L93P | nonsyn | cTC | cCT | 17 | 1 | 0.0588235 | 26799-26801 | |
M | 93 | L93M | nonsyn | CtC | AtG | 9 | 9 | 1 | 26799-26801 | |
M | 93 | L93del1 | del | ctC | ct- | 5 | 2 | 0.4 | 26799-26801 | |
M | 93 | L93del1 | del | cTc | c-c | 5 | 2 | 0.4 | 26799-26801 | |
M | 93 | L93del1 | del | Ctc | -tc | 5 | 1 | 0.2 | 26799-26801 | |
M | 93 | L93V | nonsyn | Ctc | Gtc | 3 | 2 | 0.666667 | 26799-26801 | |
M | 93 | L93del2 | del | CTc | --c | 3 | 2 | 0.666667 | 26799-26801 | |
M | 93 | L93del2 | del | cTC | c-- | 3 | 1 | 0.333333 | 26799-26801 | |
M | 93 | L93V | nonsyn | CtC | GtT | 3 | 1 | 0.333333 | 26799-26801 | |
M | 93 | L93S | nonsyn | CTc | TCc | 2 | 2 | 1 | 26799-26801 | |
M | 93 | L93A | nonsyn | CTC | GCT | 2 | 1 | 0.5 | 26799-26801 | |
M | 93 | L93A | nonsyn | CTc | GCc | 2 | 1 | 0.5 | 26799-26801 | |
M | 93 | L93N | nonsyn | CTc | AAc | 1 | 1 | 1 | 26799-26801 | |
M | 93 | L93H | nonsyn | cTc | cAc | 1 | 1 | 1 | 26799-26801 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
M | 93 | L93L | ctC | ctG | 169074 | 195375 | All | 0.032337 |
M | 93 | L93L | ctC | ctT | 26175 | 195375 | All | 0.005006 |
M | 93 | L93L | ctC | ctA | 117 | 195375 | All | 0.000022 |
M | 93 | L93L | CtC | TtG | 6 | 195375 | All | 0.000001 |
M | 93 | L93L | CtC | TtA | 3 | 195375 | All | 0.000001 |
M | 93 | L93L | ctC | ctG | 75046 | 75226 | B.1.177 | 0.988175 |
M | 93 | L93L | ctC | ctT | 175 | 75226 | B.1.177 | 0.002304 |
M | 93 | L93L | ctC | ctA | 3 | 75226 | B.1.177 | 0.00004 |
M | 93 | L93L | CtC | TtG | 2 | 75226 | B.1.177 | 0.000026 |
M | 93 | L93L | ctC | ctG | 12567 | 12570 | B.1.177.21 | 0.961 |
M | 93 | L93L | ctC | ctT | 3 | 12570 | B.1.177.21 | 0.000229 |
M | 93 | L93L | ctC | ctG | 6575 | 6576 | B.1.177.12 | 0.997421 |
M | 93 | L93L | ctC | ctT | 1 | 6576 | B.1.177.12 | 0.000152 |
M | 93 | L93L | ctC | ctG | 5973 | 5979 | B.1.177.7 | 0.984669 |
M | 93 | L93L | ctC | ctT | 5 | 5979 | B.1.177.7 | 0.000824 |
M | 93 | L93L | CtC | TtG | 1 | 5979 | B.1.177.7 | 0.000165 |
M | 93 | L93L | ctC | ctT | 5356 | 5376 | B.1.177.86 | 0.982572 |
M | 93 | L93L | ctC | ctG | 20 | 5376 | B.1.177.86 | 0.003669 |
M | 93 | L93L | ctC | ctG | 5273 | 5274 | B.1.177.81 | 0.998296 |
M | 93 | L93L | ctC | ctT | 1 | 5274 | B.1.177.81 | 0.000189 |
M | 93 | L93L | ctC | ctG | 4730 | 4736 | B.1.177.4 | 0.998312 |
M | 93 | L93L | ctC | ctT | 6 | 4736 | B.1.177.4 | 0.001266 |
M | 93 | L93L | ctC | ctG | 4572 | 4572 | B.1.177.60 | 0.998689 |
M | 93 | L93L | ctC | ctG | 3556 | 3557 | B.1.177.57 | 0.999157 |
M | 93 | L93L | ctC | ctT | 1 | 3557 | B.1.177.57 | 0.000281 |
M | 93 | L93L | ctC | ctT | 3385 | 3520 | B.1.1.7 | 0.00303 |
M | 93 | L93L | ctC | ctG | 108 | 3520 | B.1.1.7 | 0.000097 |
M | 93 | L93L | ctC | ctA | 27 | 3520 | B.1.1.7 | 0.000024 |
M | 93 | L93L | ctC | ctT | 3183 | 3184 | AY.25 | 0.019145 |
M | 93 | L93L | ctC | ctA | 1 | 3184 | AY.25 | 0.000006 |
M | 93 | L93L | ctC | ctG | 2619 | 2619 | B.1.177.45 | 0.998475 |
M | 93 | L93L | ctC | ctG | 2081 | 2092 | B.1.177.82 | 0.993317 |
M | 93 | L93L | ctC | ctA | 11 | 2092 | B.1.177.82 | 0.005251 |
M | 93 | L93L | ctC | ctT | 1977 | 1993 | AY.4 | 0.003077 |
M | 93 | L93L | ctC | ctA | 14 | 1993 | AY.4 | 0.000022 |
M | 93 | L93L | ctC | ctG | 2 | 1993 | AY.4 | 0.000003 |
M | 93 | L93L | ctC | ctG | 1873 | 1875 | B.1.177.44 | 0.971977 |
M | 93 | L93L | CtC | TtG | 1 | 1875 | B.1.177.44 | 0.000519 |
M | 93 | L93L | ctC | ctT | 1 | 1875 | B.1.177.44 | 0.000519 |
M | 93 | L93L | ctC | ctG | 1093 | 1676 | B.1 | 0.010011 |
M | 93 | L93L | ctC | ctT | 581 | 1676 | B.1 | 0.005322 |
M | 93 | L93L | ctC | ctA | 2 | 1676 | B.1 | 0.000018 |
M | 93 | L93L | ctC | ctG | 1646 | 1646 | B.1.177.54 | 0.998181 |
M | 93 | L93L | ctC | ctG | 1579 | 1580 | B.1.177.15 | 0.996215 |
M | 93 | L93L | ctC | ctT | 1 | 1580 | B.1.177.15 | 0.000631 |
M | 93 | L93L | ctC | ctG | 1505 | 1505 | B.1.177.16 | 1 |
M | 93 | L93L | ctC | ctG | 1503 | 1503 | B.1.177.65 | 1 |
M | 93 | L93L | ctC | ctG | 1498 | 1498 | B.1.177.56 | 1 |
M | 93 | L93L | ctC | ctG | 1446 | 1446 | B.1.177.35 | 0.999309 |
M | 93 | L93L | ctC | ctG | 1374 | 1375 | B.1.177.77 | 0.997821 |
M | 93 | L93L | CtC | TtG | 1 | 1375 | B.1.177.77 | 0.000726 |
M | 93 | L93L | ctC | ctG | 1373 | 1373 | B.1.177.87 | 0.999272 |
M | 93 | L93L | ctC | ctT | 1355 | 1355 | B.1.400 | 0.581296 |
M | 93 | L93L | ctC | ctG | 1329 | 1329 | B.1.177.8 | 1 |
M | 93 | L93L | ctC | ctG | 1279 | 1283 | B.1.177.73 | 0.724236 |
M | 93 | L93L | ctC | ctT | 4 | 1283 | B.1.177.73 | 0.002265 |
M | 93 | L93L | ctC | ctG | 1209 | 1210 | B.1.177.17 | 0.992611 |
M | 93 | L93L | ctC | ctT | 1 | 1210 | B.1.177.17 | 0.000821 |
M | 93 | L93L | ctC | ctG | 1139 | 1139 | B.1.177.10 | 1 |
M | 93 | L93L | ctC | ctG | 1118 | 1118 | B.1.177.42 | 1 |
M | 93 | L93L | ctC | ctG | 1089 | 1089 | B.1.177.46 | 1 |
M | 93 | L93L | ctC | ctG | 992 | 994 | B.1.177.6 | 0.96875 |
M | 93 | L93L | ctC | ctT | 2 | 994 | B.1.177.6 | 0.001953 |
M | 93 | L93L | ctC | ctG | 955 | 955 | B.1.177.75 | 0.993757 |
M | 93 | L93L | ctC | ctG | 862 | 862 | B.1.177.18 | 1 |
M | 93 | L93L | ctC | ctG | 835 | 835 | B.1.177.62 | 0.995232 |
M | 93 | L93L | ctC | ctT | 782 | 824 | B.1.617.2 | 0.002945 |
M | 93 | L93L | ctC | ctG | 41 | 824 | B.1.617.2 | 0.000154 |
M | 93 | L93L | ctC | ctA | 1 | 824 | B.1.617.2 | 0.000004 |
M | 93 | L93L | ctC | ctG | 805 | 805 | B.1.177.5 | 1 |
M | 93 | L93L | ctC | ctG | 772 | 772 | B.1.177.24 | 1 |
M | 93 | L93L | ctC | ctG | 750 | 750 | B.1.177.58 | 0.998668 |
M | 93 | L93L | ctC | ctG | 750 | 750 | B.1.177.9 | 0.998668 |
M | 93 | L93L | ctC | ctG | 739 | 739 | W.4 | 0.998649 |
M | 93 | L93L | ctC | ctG | 736 | 738 | B.1.177.32 | 0.993252 |
M | 93 | L93L | CtC | TtG | 1 | 738 | B.1.177.32 | 0.00135 |
M | 93 | L93L | ctC | ctT | 1 | 738 | B.1.177.32 | 0.00135 |
M | 93 | L93L | ctC | ctG | 699 | 699 | B.1.177.19 | 1 |
M | 93 | L93L | ctC | ctG | 674 | 674 | B.1.177.69 | 1 |
M | 93 | L93L | ctC | ctG | 674 | 674 | B.1.177.83 | 0.998519 |
M | 93 | L93L | ctC | ctG | 659 | 659 | B.1.177.20 | 1 |
M | 93 | L93L | ctC | ctG | 653 | 653 | B.1.177.43 | 0.964549 |
M | 93 | L93L | ctC | ctT | 624 | 624 | B.1.160.8 | 0.804124 |
M | 93 | L93L | ctC | ctG | 607 | 607 | B.1.177.33 | 0.998355 |
M | 93 | L93L | ctC | ctT | 585 | 590 | AY.44 | 0.003561 |
M | 93 | L93L | ctC | ctG | 5 | 590 | AY.44 | 0.00003 |
M | 93 | L93L | ctC | ctG | 588 | 588 | B.1.177.11 | 0.998302 |
M | 93 | L93L | ctC | ctG | 567 | 567 | B.1.177.52 | 0.996485 |
M | 93 | L93L | ctC | ctG | 523 | 523 | B.1.177.80 | 1 |
M | 93 | L93L | ctC | ctT | 419 | 484 | AY.103 | 0.002602 |
M | 93 | L93L | ctC | ctG | 64 | 484 | AY.103 | 0.000397 |
M | 93 | L93L | ctC | ctA | 1 | 484 | AY.103 | 0.000006 |
M | 93 | L93L | ctC | ctT | 451 | 454 | AY.43 | 0.001998 |
M | 93 | L93L | ctC | ctG | 2 | 454 | AY.43 | 0.000009 |
M | 93 | L93L | ctC | ctA | 1 | 454 | AY.43 | 0.000004 |
M | 93 | L93L | ctC | ctG | 381 | 429 | B.1.177.55 | 0.888112 |
M | 93 | L93L | ctC | ctT | 48 | 429 | B.1.177.55 | 0.111888 |
M | 93 | L93L | ctC | ctG | 427 | 427 | B.1.177.79 | 1 |
M | 93 | L93L | ctC | ctG | 416 | 416 | B.1.177.53 | 0.995215 |
M | 93 | L93L | ctC | ctG | 400 | 400 | B.1.177.41 | 1 |
M | 93 | L93L | ctC | ctG | 399 | 399 | B.1.177.76 | 0.995012 |
M | 93 | L93L | ctC | ctG | 398 | 398 | B.1.177.30 | 1 |
M | 93 | L93L | ctC | ctT | 230 | 395 | B.1.1 | 0.004172 |
M | 93 | L93L | ctC | ctG | 162 | 395 | B.1.1 | 0.002939 |
M | 93 | L93L | ctC | ctA | 2 | 395 | B.1.1 | 0.000036 |
M | 93 | L93L | CtC | TtA | 1 | 395 | B.1.1 | 0.000018 |
M | 93 | L93L | ctC | ctT | 393 | 393 | B.1.526 | 0.009237 |
M | 93 | L93L | ctC | ctT | 354 | 378 | B.1.2 | 0.003117 |
M | 93 | L93L | ctC | ctG | 23 | 378 | B.1.2 | 0.000203 |
M | 93 | L93L | ctC | ctA | 1 | 378 | B.1.2 | 0.000009 |
M | 93 | L93L | ctC | ctG | 370 | 370 | B.1.177.63 | 1 |
M | 93 | L93L | ctC | ctT | 357 | 357 | AY.3.1 | 0.030437 |
M | 93 | L93L | ctC | ctG | 320 | 320 | B.1.177.48 | 1 |
M | 93 | L93L | ctC | ctG | 313 | 314 | Z.1 | 0.904624 |
M | 93 | L93L | ctC | ctT | 1 | 314 | Z.1 | 0.00289 |
M | 93 | L93L | ctC | ctG | 297 | 300 | B.1.177.23 | 0.961165 |
M | 93 | L93L | ctC | ctT | 3 | 300 | B.1.177.23 | 0.009709 |
M | 93 | L93L | ctC | ctT | 299 | 299 | AY.5 | 0.006174 |
M | 93 | L93L | ctC | ctG | 295 | 295 | B.1.177.72 | 1 |
M | 93 | L93L | ctC | ctT | 292 | 295 | P.1 | 0.0046 |
M | 93 | L93L | ctC | ctG | 2 | 295 | P.1 | 0.000032 |
M | 93 | L93L | ctC | ctA | 1 | 295 | P.1 | 0.000016 |
M | 93 | L93L | ctC | ctT | 288 | 290 | AY.20 | 0.011193 |
M | 93 | L93L | ctC | ctA | 2 | 290 | AY.20 | 0.000078 |
M | 93 | L93L | ctC | ctT | 273 | 273 | B.1.1.519 | 0.010841 |
M | 93 | L93F | Ctc | Ttc | 257 | 263 | All | 0.000049 |
M | 93 | L93F | CtC | TtT | 6 | 263 | All | 0.000001 |
M | 93 | L93L | ctC | ctT | 262 | 262 | B.1.637 | 0.019145 |
M | 93 | L93L | ctC | ctG | 259 | 259 | U.3 | 1 |
M | 93 | L93del | CTC | --- | 246 | 246 | All | 0.000047 |
M | 93 | L93L | ctC | ctT | 231 | 232 | B.1.351 | 0.006867 |
M | 93 | L93L | ctC | ctG | 1 | 232 | B.1.351 | 0.00003 |
M | 93 | L93L | ctC | ctG | 198 | 220 | B.1.177.2 | 0.9 |
M | 93 | L93L | ctC | ctT | 22 | 220 | B.1.177.2 | 0.1 |
M | 93 | L93L | ctC | ctG | 218 | 218 | B.1.177.51 | 0.995434 |
M | 93 | L93L | ctC | ctG | 212 | 212 | B.1.177.50 | 0.995305 |
M | 93 | L93L | ctC | ctG | 207 | 207 | W.2 | 1 |
M | 93 | L93L | ctC | ctG | 194 | 194 | B.1.177.40 | 1 |
M | 93 | L93L | ctC | ctG | 190 | 190 | W.3 | 1 |
M | 93 | L93L | ctC | ctG | 184 | 184 | B.1.177.85 | 1 |
M | 93 | L93L | ctC | ctT | 114 | 177 | B.1.221 | 0.008098 |
M | 93 | L93L | ctC | ctG | 63 | 177 | B.1.221 | 0.004475 |
M | 93 | L93L | ctC | ctG | 167 | 167 | B.1.177.70 | 0.988166 |
M | 93 | L93L | ctC | ctT | 165 | 165 | B.1.160.24 | 0.730088 |
M | 93 | L93L | ctC | ctG | 164 | 164 | B.1.177.14 | 1 |
M | 93 | L93L | ctC | ctG | 80 | 159 | B.1.160 | 0.002495 |
M | 93 | L93L | ctC | ctT | 79 | 159 | B.1.160 | 0.002464 |
M | 93 | L93L | ctC | ctT | 152 | 152 | AY.39 | 0.003756 |
M | 93 | L93L | ctC | ctG | 150 | 150 | B.1.177.84 | 1 |
M | 93 | L93L | ctC | ctT | 150 | 150 | B.1.429 | 0.003529 |
M | 93 | L93L | ctC | ctG | 143 | 143 | B.1.177.26 | 1 |
M | 93 | L93L | ctC | ctG | 104 | 139 | B.1.258 | 0.006921 |
M | 93 | L93L | ctC | ctT | 35 | 139 | B.1.258 | 0.002329 |
M | 93 | L93L | ctC | ctG | 138 | 138 | AA.1 | 1 |
M | 93 | L93L | ctC | ctG | 135 | 135 | B.1.177.28 | 1 |
M | 93 | L93L | ctC | ctG | 131 | 131 | B.1.177.3 | 1 |
M | 93 | L93L | ctC | ctG | 131 | 131 | B.1.177.67 | 1 |
M | 93 | L93L | ctC | ctG | 130 | 130 | AA.2 | 1 |
M | 93 | L93L | ctC | ctT | 125 | 126 | AY.3 | 0.001243 |
M | 93 | L93L | ctC | ctA | 1 | 126 | AY.3 | 0.00001 |
M | 93 | L93L | ctC | ctG | 115 | 115 | W.1 | 1 |
M | 93 | L93L | ctC | ctG | 114 | 114 | B.1.160.30 | 0.339286 |
M | 93 | L93L | ctC | ctT | 111 | 112 | B.1.1.317 | 0.045698 |
M | 93 | L93L | ctC | ctG | 1 | 112 | B.1.1.317 | 0.000412 |
M | 93 | L93L | ctC | ctG | 112 | 112 | U.2 | 0.982456 |
M | 93 | L93L | ctC | ctG | 110 | 110 | AA.4 | 1 |
M | 93 | L93L | ctC | ctG | 109 | 109 | AA.7 | 1 |
M | 93 | L93L | ctC | ctG | 92 | 107 | AY.120 | 0.00342 |
M | 93 | L93L | ctC | ctT | 15 | 107 | AY.120 | 0.000558 |
M | 93 | L93L | ctC | ctT | 100 | 107 | B.1.240 | 0.021556 |
M | 93 | L93L | ctC | ctG | 7 | 107 | B.1.240 | 0.001509 |
M | 93 | L93L | ctC | ctT | 65 | 106 | AY.23 | 0.004534 |
M | 93 | L93L | ctC | ctA | 29 | 106 | AY.23 | 0.002023 |
M | 93 | L93L | ctC | ctG | 12 | 106 | AY.23 | 0.000837 |
M | 93 | L93L | ctC | ctG | 106 | 106 | B.1.177.27 | 1 |
M | 93 | L93L | ctC | ctT | 104 | 104 | AY.26 | 0.002944 |
M | 93 | L93L | ctC | ctG | 103 | 103 | B.1.177.78 | 1 |
M | 93 | L93L | ctC | ctG | 99 | 99 | B.1.177.71 | 1 |
M | 93 | L93L | ctC | ctG | 96 | 96 | B.1.177.38 | 1 |
M | 93 | L93L | ctC | ctT | 92 | 92 | B.1.36.36 | 0.055388 |
M | 93 | L93L | ctC | ctT | 85 | 86 | B.1.243 | 0.005915 |
M | 93 | L93L | ctC | ctG | 1 | 86 | B.1.243 | 0.00007 |
M | 93 | L93L | ctC | ctT | 82 | 82 | AY.98.1 | 0.003971 |
M | 93 | L93L | ctC | ctG | 81 | 81 | B.1.177.88 | 1 |
M | 93 | L93L | ctC | ctG | 79 | 79 | B.1.177.31 | 0.908046 |
M | 93 | L93L | ctC | ctG | 78 | 78 | U.1 | 1 |
M | 93 | L93L | ctC | ctG | 78 | 78 | Y.1 | 1 |
M | 93 | L93L | ctC | ctG | 77 | 77 | B.1.177.47 | 1 |
M | 93 | L93L | ctC | ctT | 77 | 77 | B.1.525 | 0.008713 |
M | 93 | L93L | ctC | ctT | 73 | 73 | AY.29 | 0.001151 |
M | 93 | L93L | ctC | ctT | 72 | 72 | AY.102 | 0.001909 |
M | 93 | L93L | ctC | ctT | 72 | 72 | AY.47 | 0.00224 |
M | 93 | L93I | Ctc | Atc | 67 | 70 | All | 0.000013 |
M | 93 | L93I | CtC | AtT | 2 | 70 | All | 0 |
M | 93 | L93I | CtC | AtA | 1 | 70 | All | 0 |
M | 93 | L93L | ctC | ctT | 70 | 70 | B.1.36.18 | 0.029412 |
M | 93 | L93L | ctC | ctG | 67 | 67 | B.1.177.25 | 1 |
M | 93 | L93del | CTC | --- | 66 | 66 | B.1.1.7 | 0.000059 |
M | 93 | L93L | ctC | ctG | 66 | 66 | B.1.177.68 | 1 |
M | 93 | L93L | ctC | ctG | 66 | 66 | B.1.177.74 | 1 |
M | 93 | L93L | ctC | ctG | 65 | 65 | B.1.177.39 | 1 |
M | 93 | L93L | ctC | ctT | 63 | 65 | B.1.596 | 0.00549 |
M | 93 | L93L | ctC | ctG | 2 | 65 | B.1.596 | 0.000174 |
M | 93 | L93L | ctC | ctT | 64 | 64 | B.1.400.1 | 0.969697 |
M | 93 | L93L | ctC | ctG | 62 | 62 | AA.5 | 1 |
M | 93 | L93L | ctC | ctG | 62 | 62 | AA.6 | 1 |
M | 93 | L93L | ctC | ctG | 62 | 62 | B.1.177.36 | 1 |
M | 93 | L93L | ctC | ctG | 62 | 62 | B.1.177.59 | 1 |
M | 93 | L93del | CTC | --- | 59 | 59 | B.1.177.21 | 0.004512 |
M | 93 | L93L | ctC | ctT | 56 | 56 | AY.119 | 0.001977 |
M | 93 | L93L | ctC | ctT | 56 | 56 | B.1.1.429 | 0.258065 |
M | 93 | L93L | ctC | ctT | 54 | 54 | B.1.348 | 0.981818 |
M | 93 | L93L | ctC | ctT | 29 | 54 | B.1.36 | 0.004231 |
M | 93 | L93L | ctC | ctG | 25 | 54 | B.1.36 | 0.003648 |
M | 93 | L93L | ctC | ctT | 50 | 51 | B.1.126 | 0.063776 |
M | 93 | L93L | ctC | ctG | 1 | 51 | B.1.126 | 0.001276 |
M | 93 | L93L | ctC | ctT | 46 | 47 | AY.4.2 | 0.000998 |
M | 93 | L93L | ctC | ctG | 1 | 47 | AY.4.2 | 0.000022 |
M | 93 | L93L | ctC | ctT | 45 | 46 | AY.6 | 0.001851 |
M | 93 | L93L | ctC | ctA | 1 | 46 | AY.6 | 0.000041 |
M | 93 | L93L | ctC | ctG | 45 | 45 | AA.8 | 1 |
M | 93 | L93L | ctC | ctT | 45 | 45 | B.1.1.302 | 0.093361 |
M | 93 | L93L | ctC | ctT | 44 | 44 | B.1.1.343 | 0.916667 |
M | 93 | L93L | ctC | ctG | 44 | 44 | V.1 | 1 |
M | 93 | L93L | ctC | ctT | 43 | 43 | AY.39.1 | 0.001703 |
M | 93 | L93L | ctC | ctT | 41 | 42 | AY.67 | 0.019034 |
M | 93 | L93L | ctC | ctA | 1 | 42 | AY.67 | 0.000464 |
M | 93 | L93L | ctC | ctG | 41 | 41 | B.1.177.89 | 1 |
M | 93 | L93L | ctC | ctG | 37 | 37 | AA.3 | 1 |
M | 93 | L93L | ctC | ctG | 37 | 37 | B.1.177.37 | 1 |
M | 93 | L93L | ctC | ctT | 36 | 36 | AY.100 | 0.001656 |
M | 93 | L93L | ctC | ctT | 36 | 36 | AY.118 | 0.002255 |
M | 93 | L93F | Ctc | Ttc | 36 | 36 | B.1.1.7 | 0.000032 |
M | 93 | L93I | Ctc | Atc | 35 | 35 | AY.4 | 0.000054 |
M | 93 | L93L | ctC | ctT | 35 | 35 | C.36.3 | 0.019853 |
M | 93 | L93L | ctC | ctT | 33 | 35 | D.2 | 0.002476 |
M | 93 | L93L | ctC | ctA | 2 | 35 | D.2 | 0.00015 |
M | 93 | L93L | ctC | ctT | 33 | 33 | AY.9.2 | 0.001212 |
M | 93 | L93L | ctC | ctT | 33 | 33 | B.1.1.33 | 0.013889 |
M | 93 | L93L | ctC | ctT | 33 | 33 | B.1.623 | 0.017704 |
M | 93 | L93L | ctC | ctG | 31 | 31 | V.2 | 1 |
M | 93 | L93L | ctC | ctG | 30 | 30 | B.1.160.20 | 0.267857 |
M | 93 | L93L | ctC | ctT | 29 | 29 | B.1.234 | 0.003826 |
M | 93 | L93L | ctC | ctT | 29 | 29 | B.1.427 | 0.001464 |
M | 93 | L93L | ctC | ctT | 28 | 28 | AY.33 | 0.00187 |
M | 93 | L93L | ctC | ctT | 27 | 27 | AY.42 | 0.001086 |
M | 93 | L93L | ctC | ctG | 27 | 27 | B.1.177.49 | 1 |
M | 93 | L93L | ctC | ctT | 26 | 26 | AY.109 | 0.019231 |
M | 93 | L93L | ctC | ctT | 25 | 26 | AY.13 | 0.004024 |
M | 93 | L93L | ctC | ctG | 1 | 26 | AY.13 | 0.000161 |
M | 93 | L93L | ctC | ctT | 26 | 26 | AY.36 | 0.003854 |
M | 93 | L93L | ctC | ctT | 26 | 26 | AY.4.5 | 0.002795 |
M | 93 | L93L | ctC | ctT | 25 | 26 | AY.75 | 0.001401 |
M | 93 | L93L | ctC | ctA | 1 | 26 | AY.75 | 0.000056 |
M | 93 | L93L | ctC | ctT | 25 | 26 | B.1.1.385 | 0.111607 |
M | 93 | L93L | ctC | ctG | 1 | 26 | B.1.1.385 | 0.004464 |
M | 93 | L93del | CTC | --- | 25 | 25 | B.1 | 0.000229 |
M | 93 | L93F | Ctc | Ttc | 25 | 25 | B.1.617.2 | 0.000094 |
M | 93 | L93F | Ctc | Ttc | 24 | 24 | AY.25 | 0.000144 |
M | 93 | L93L | ctC | ctT | 24 | 24 | AY.98 | 0.001896 |
M | 93 | L93L | ctC | ctT | 24 | 24 | B.1.1.129 | 0.220183 |
M | 93 | L93L | ctC | ctT | 24 | 24 | B.1.1.214 | 0.001331 |
M | 93 | L93L | ctC | ctG | 24 | 24 | B.1.177.66 | 1 |
M | 93 | L93L | ctC | ctT | 23 | 24 | Q.3 | 0.003336 |
M | 93 | L93L | ctC | ctG | 1 | 24 | Q.3 | 0.000145 |
M | 93 | L93L | ctC | ctG | 23 | 23 | B.1.177.61 | 1 |
M | 93 | L93L | ctC | ctT | 23 | 23 | B.1.9.5 | 0.130682 |
M | 93 | L93L | ctC | ctT | 18 | 22 | B.1.160.16 | 0.016729 |
M | 93 | L93L | ctC | ctG | 4 | 22 | B.1.160.16 | 0.003717 |
M | 93 | L93L | ctC | ctT | 20 | 20 | AY.46.4 | 0.00329 |
M | 93 | L93L | ctC | ctT | 20 | 20 | AY.74 | 0.002313 |
M | 93 | L93L | ctC | ctT | 20 | 20 | B.1.139 | 0.014663 |
M | 93 | L93L | ctC | ctT | 19 | 19 | AY.54 | 0.001812 |
M | 93 | L93L | ctC | ctT | 19 | 19 | B.1.621 | 0.001682 |
M | 93 | L93L | ctC | ctT | 19 | 19 | Q.8 | 0.003133 |
M | 93 | L93F | Ctc | Ttc | 18 | 18 | AY.4 | 0.000028 |
M | 93 | L93L | ctC | ctG | 16 | 18 | B.1.1.39 | 0.008155 |
M | 93 | L93L | ctC | ctT | 2 | 18 | B.1.1.39 | 0.001019 |
M | 93 | L93P | cTc | cCc | 16 | 17 | All | 0.000003 |
M | 93 | L93P | cTC | cCT | 1 | 17 | All | 0 |
M | 93 | L93L | ctC | ctT | 17 | 17 | C.16 | 0.018028 |
M | 93 | L93L | ctC | ctT | 16 | 17 | Q.1 | 0.002021 |
M | 93 | L93L | ctC | ctG | 1 | 17 | Q.1 | 0.000126 |
M | 93 | L93L | ctC | ctT | 16 | 16 | AY.117 | 0.001352 |
M | 93 | L93L | ctC | ctT | 16 | 16 | AZ.2 | 0.013136 |
M | 93 | L93L | ctC | ctG | 10 | 16 | B | 0.001278 |
M | 93 | L93L | ctC | ctT | 6 | 16 | B | 0.000767 |
M | 93 | L93L | ctC | ctT | 16 | 16 | B.1.1.306 | 0.007014 |
M | 93 | L93L | ctC | ctT | 11 | 16 | B.1.1.37 | 0.002122 |
M | 93 | L93L | ctC | ctG | 5 | 16 | B.1.1.37 | 0.000964 |
M | 93 | L93L | ctC | ctT | 16 | 16 | B.1.564 | 0.006814 |
M | 93 | L93L | ctC | ctT | 16 | 16 | B.1.580 | 0.065041 |
M | 93 | L93L | ctC | ctT | 15 | 15 | AY.45 | 0.001825 |
M | 93 | L93L | ctC | ctT | 15 | 15 | B.1.497 | 0.004721 |
M | 93 | L93L | ctC | ctT | 14 | 14 | AY.92 | 0.004022 |
M | 93 | L93L | ctC | ctT | 14 | 14 | AY.99.2 | 0.00129 |
M | 93 | L93L | ctC | ctG | 14 | 14 | B.1.177.29 | 0.933333 |
M | 93 | L93L | ctC | ctT | 14 | 14 | P.1.14 | 0.000669 |
M | 93 | L93L | ctC | ctT | 13 | 13 | AY.106 | 0.004354 |
M | 93 | L93L | ctC | ctG | 13 | 13 | B.1.177.34 | 0.684211 |
M | 93 | L93L | ctC | ctT | 10 | 12 | AY.27 | 0.000647 |
M | 93 | L93L | ctC | ctA | 2 | 12 | AY.27 | 0.000129 |
M | 93 | L93L | ctC | ctT | 11 | 12 | AY.46 | 0.001145 |
M | 93 | L93L | ctC | ctG | 1 | 12 | AY.46 | 0.000104 |
M | 93 | L93L | ctC | ctT | 11 | 12 | AY.9 | 0.000744 |
M | 93 | L93L | ctC | ctG | 1 | 12 | AY.9 | 0.000068 |
M | 93 | L93L | ctC | ctG | 12 | 12 | B.1.160.28 | 0.035088 |
M | 93 | L93L | ctC | ctT | 12 | 12 | B.1.265 | 0.015248 |
M | 93 | L93L | ctC | ctT | 12 | 12 | B.1.396 | 0.008469 |
M | 93 | L93F | Ctc | Ttc | 11 | 11 | AY.100 | 0.000506 |
M | 93 | L93L | ctC | ctT | 11 | 11 | AY.14 | 0.000968 |
M | 93 | L93L | ctC | ctG | 11 | 11 | B.1.177.64 | 1 |
M | 93 | L93L | ctC | ctT | 9 | 11 | P.2 | 0.00168 |
M | 93 | L93L | ctC | ctG | 2 | 11 | P.2 | 0.000373 |
M | 93 | L93F | Ctc | Ttc | 10 | 10 | AY.120 | 0.000372 |
M | 93 | L93F | Ctc | Ttc | 10 | 10 | AY.3 | 0.000099 |
M | 93 | L93L | ctC | ctT | 7 | 10 | B.1.1.464 | 0.010309 |
M | 93 | L93L | ctC | ctA | 3 | 10 | B.1.1.464 | 0.004418 |
M | 93 | L93L | ctC | ctT | 10 | 10 | B.1.404 | 0.013021 |
M | 93 | L93L | ctC | ctT | 10 | 10 | B.1.561 | 0.00397 |
M | 93 | L93L | ctC | ctT | 10 | 10 | P.1.15 | 0.002323 |
M | 93 | L93M | CtC | AtG | 9 | 9 | All | 0.000002 |
M | 93 | L93L | ctC | ctT | 9 | 9 | AY.110 | 0.001014 |
M | 93 | L93L | ctC | ctT | 9 | 9 | AY.114 | 0.00208 |
M | 93 | L93L | ctC | ctT | 9 | 9 | B.1.1.348 | 0.007166 |
M | 93 | L93L | ctC | ctG | 7 | 9 | B.1.1.70 | 0.002387 |
M | 93 | L93L | ctC | ctT | 2 | 9 | B.1.1.70 | 0.000682 |
M | 93 | L93L | ctC | ctT | 9 | 9 | B.1.279 | 0.004622 |
M | 93 | L93L | ctC | ctT | 9 | 9 | B.1.36.1 | 0.010262 |
M | 93 | L93L | ctC | ctT | 5 | 9 | B.1.509 | 0.004329 |
M | 93 | L93L | ctC | ctG | 4 | 9 | B.1.509 | 0.003463 |
M | 93 | L93L | ctC | ctT | 8 | 9 | B.1.575 | 0.002427 |
M | 93 | L93L | ctC | ctG | 1 | 9 | B.1.575 | 0.000303 |
M | 93 | L93L | ctC | ctT | 8 | 9 | B.1.595 | 0.002088 |
M | 93 | L93L | ctC | ctG | 1 | 9 | B.1.595 | 0.000261 |
M | 93 | L93L | ctC | ctT | 9 | 9 | C.14 | 0.038961 |
M | 93 | L93L | ctC | ctT | 7 | 8 | A.2.5 | 0.003493 |
M | 93 | L93L | ctC | ctG | 1 | 8 | A.2.5 | 0.000499 |
M | 93 | L93F | Ctc | Ttc | 8 | 8 | B.1 | 0.000073 |
M | 93 | L93L | ctC | ctT | 8 | 8 | B.1.1.434 | 0.002788 |
M | 93 | L93L | ctC | ctG | 8 | 8 | B.1.160.32 | 0.034335 |
M | 93 | L93L | ctC | ctT | 8 | 8 | B.1.206 | 0.006525 |
M | 93 | L93L | ctC | ctG | 5 | 8 | B.1.258.11 | 0.001982 |
M | 93 | L93L | ctC | ctT | 3 | 8 | B.1.258.11 | 0.001189 |
M | 93 | L93L | ctC | ctT | 6 | 8 | B.1.258.17 | 0.000624 |
M | 93 | L93L | ctC | ctG | 2 | 8 | B.1.258.17 | 0.000208 |
M | 93 | L93L | ctC | ctT | 8 | 8 | B.1.258.3 | 0.0134 |
M | 93 | L93F | Ctc | Ttc | 8 | 8 | B.1.575.1 | 0.019512 |
M | 93 | L93L | ctC | ctT | 7 | 8 | B.1.609 | 0.003356 |
M | 93 | L93L | ctC | ctG | 1 | 8 | B.1.609 | 0.000479 |
M | 93 | L93I | Ctc | Atc | 8 | 8 | B.1.617.2 | 0.00003 |
M | 93 | L93L | ctC | ctT | 8 | 8 | B.4.1 | 0.150943 |
M | 93 | L93L | ctC | ctT | 8 | 8 | P.1.10 | 0.002156 |
M | 93 | L93L | ctC | ctT | 8 | 8 | R.1 | 0.00072 |
M | 93 | L93L | CtC | TtA | 2 | 7 | 0.111111 | |
M | 93 | L93L | ctC | ctA | 2 | 7 | 0.111111 | |
M | 93 | L93L | ctC | ctT | 2 | 7 | 0.111111 | |
M | 93 | L93L | ctC | ctG | 1 | 7 | 0.055556 | |
M | 93 | L93L | ctC | ctT | 7 | 7 | AY.105 | 0.004502 |
M | 93 | L93F | Ctc | Ttc | 7 | 7 | AY.119 | 0.000247 |
M | 93 | L93L | ctC | ctT | 7 | 7 | AY.61 | 0.000733 |
M | 93 | L93L | ctC | ctT | 7 | 7 | B.1.1.228 | 0.021341 |
M | 93 | L93L | ctC | ctT | 7 | 7 | B.1.36.29 | 0.003621 |
M | 93 | L93L | ctC | ctG | 5 | 7 | B.1.36.39 | 0.011086 |
M | 93 | L93L | ctC | ctT | 2 | 7 | B.1.36.39 | 0.004435 |
M | 93 | L93L | ctC | ctT | 5 | 6 | AD.2 | 0.001095 |
M | 93 | L93L | ctC | ctG | 1 | 6 | AD.2 | 0.000219 |
M | 93 | L93L | ctC | ctT | 6 | 6 | B.1.1.284 | 0.000644 |
M | 93 | L93L | ctC | ctT | 6 | 6 | B.1.1.318 | 0.001811 |
M | 93 | L93L | ctC | ctG | 5 | 6 | B.1.416.1 | 0.007812 |
M | 93 | L93L | ctC | ctT | 1 | 6 | B.1.416.1 | 0.001563 |
M | 93 | L93F | Ctc | Ttc | 6 | 6 | B.1.621 | 0.000531 |
M | 93 | L93L | ctC | ctT | 6 | 6 | C.1 | 0.014354 |
M | 93 | L93L | ctC | ctT | 6 | 6 | C.37 | 0.000696 |
M | 93 | L93del1 | cTc | c-c | 2 | 5 | All | 0 |
M | 93 | L93del1 | ctC | ct- | 2 | 5 | All | 0 |
M | 93 | L93del1 | Ctc | -tc | 1 | 5 | All | 0 |
M | 93 | L93F | Ctc | Ttc | 5 | 5 | AY.103 | 0.000031 |
M | 93 | L93L | ctC | ctT | 5 | 5 | AY.111 | 0.000916 |
M | 93 | L93L | ctC | ctT | 5 | 5 | AY.34 | 0.000485 |
M | 93 | L93del | CTC | --- | 5 | 5 | AY.43 | 0.000022 |
M | 93 | L93I | Ctc | Atc | 5 | 5 | AY.5 | 0.000103 |
M | 93 | L93F | Ctc | Ttc | 5 | 5 | AY.5.3 | 0.001687 |
M | 93 | L93L | ctC | ctT | 4 | 5 | B.1.1.1 | 0.001307 |
M | 93 | L93L | ctC | ctG | 1 | 5 | B.1.1.1 | 0.000327 |
M | 93 | L93L | ctC | ctG | 4 | 5 | B.1.1.170 | 0.004988 |
M | 93 | L93L | ctC | ctT | 1 | 5 | B.1.1.170 | 0.001247 |
M | 93 | L93L | ctC | ctT | 5 | 5 | B.1.1.222 | 0.00102 |
M | 93 | L93L | ctC | ctT | 5 | 5 | B.1.1.28 | 0.001556 |
M | 93 | L93L | ctC | ctT | 5 | 5 | B.1.1.316 | 0.004625 |
M | 93 | L93L | ctC | ctT | 5 | 5 | B.1.1.487 | 0.027933 |
M | 93 | L93del | CTC | --- | 5 | 5 | B.1.160 | 0.000156 |
M | 93 | L93M | CtC | AtG | 5 | 5 | B.1.177.60 | 0.001092 |
M | 93 | L93L | ctC | ctT | 5 | 5 | B.1.558 | 0.022831 |
M | 93 | L93L | ctC | ctT | 4 | 5 | B.1.617.1 | 0.000516 |
M | 93 | L93L | ctC | ctG | 1 | 5 | B.1.617.1 | 0.000129 |
M | 93 | L93L | ctC | ctT | 4 | 4 | AY.10 | 0.00212 |
M | 93 | L93F | Ctc | Ttc | 4 | 4 | AY.113 | 0.00057 |
M | 93 | L93L | ctC | ctT | 4 | 4 | AY.121 | 0.000541 |
M | 93 | L93L | ctC | ctT | 4 | 4 | AY.16.1 | 0.00188 |
M | 93 | L93del | CTC | --- | 4 | 4 | AY.25 | 0.000024 |
M | 93 | L93F | Ctc | Ttc | 4 | 4 | AY.26 | 0.000113 |
M | 93 | L93L | ctC | ctT | 4 | 4 | AY.30 | 0.001583 |
M | 93 | L93L | ctC | ctT | 4 | 4 | AY.4.2.1 | 0.000596 |
M | 93 | L93F | Ctc | Ttc | 4 | 4 | AY.44 | 0.000024 |
M | 93 | L93L | ctC | ctT | 4 | 4 | AY.5.3 | 0.00135 |
M | 93 | L93L | ctC | ctT | 4 | 4 | AY.68 | 0.001095 |
M | 93 | L93L | ctC | ctT | 4 | 4 | AY.70 | 0.000834 |
M | 93 | L93del | CTC | --- | 4 | 4 | AY.75.1 | 0.000721 |
M | 93 | L93L | ctC | ctT | 4 | 4 | AY.9.1 | 0.000335 |
M | 93 | L93del | CTC | --- | 4 | 4 | AY.99.2 | 0.000369 |
M | 93 | L93F | Ctc | Ttc | 4 | 4 | B.1.1 | 0.000073 |
M | 93 | L93L | ctC | ctT | 4 | 4 | B.1.1.231 | 0.012384 |
M | 93 | L93L | ctC | ctT | 4 | 4 | B.1.1.326 | 0.007042 |
M | 93 | L93L | ctC | ctT | 3 | 4 | B.1.1.372 | 0.002066 |
M | 93 | L93L | ctC | ctG | 1 | 4 | B.1.1.372 | 0.000689 |
M | 93 | L93L | ctC | ctT | 4 | 4 | B.1.147 | 0.003023 |
M | 93 | L93M | CtC | AtG | 4 | 4 | B.1.177 | 0.000053 |
M | 93 | L93del | CTC | --- | 4 | 4 | B.1.177 | 0.000053 |
M | 93 | L93L | ctC | ctT | 4 | 4 | B.1.194 | 0.16 |
M | 93 | L93del | CTC | --- | 4 | 4 | B.1.2 | 0.000035 |
M | 93 | L93L | ctC | ctA | 3 | 4 | B.1.241 | 0.002435 |
M | 93 | L93L | ctC | ctT | 1 | 4 | B.1.241 | 0.000812 |
M | 93 | L93L | ctC | ctT | 4 | 4 | B.1.351.2 | 0.00121 |
M | 93 | L93L | ctC | ctT | 4 | 4 | B.1.366 | 0.019512 |
M | 93 | L93L | ctC | ctT | 4 | 4 | B.1.369 | 0.001141 |
M | 93 | L93F | CtC | TtT | 4 | 4 | B.1.400 | 0.001716 |
M | 93 | L93L | ctC | ctT | 4 | 4 | B.1.428 | 0.004082 |
M | 93 | L93F | Ctc | Ttc | 4 | 4 | B.1.453 | 0.012945 |
M | 93 | L93L | ctC | ctG | 4 | 4 | B.1.473 | 0.076923 |
M | 93 | L93L | ctC | ctA | 2 | 4 | B.1.517 | 0.000854 |
M | 93 | L93L | ctC | ctT | 2 | 4 | B.1.517 | 0.000854 |
M | 93 | L93L | ctC | ctT | 4 | 4 | B.1.517.1 | 0.021053 |
M | 93 | L93L | ctC | ctT | 4 | 4 | B.1.568 | 0.004444 |
M | 93 | L93L | ctC | ctT | 4 | 4 | B.3.1 | 0.006633 |
M | 93 | L93L | ctC | ctT | 2 | 4 | P.1.12 | 0.000968 |
M | 93 | L93L | ctC | ctG | 2 | 4 | P.1.12 | 0.000968 |
M | 93 | L93L | ctC | ctT | 4 | 4 | P.1.17 | 0.000647 |
M | 93 | L93L | ctC | ctT | 4 | 4 | P.1.7 | 0.001277 |
M | 93 | L93F | Ctc | Ttc | 4 | 4 | Q.4 | 0.001819 |
M | 93 | L93L | ctC | ctG | 2 | 3 | A | 0.000774 |
M | 93 | L93L | ctC | ctT | 1 | 3 | A | 0.000387 |
M | 93 | L93V | Ctc | Gtc | 2 | 3 | All | 0 |
M | 93 | L93del2 | CTc | --c | 2 | 3 | All | 0 |
M | 93 | L93del2 | cTC | c-- | 1 | 3 | All | 0 |
M | 93 | L93V | CtC | GtT | 1 | 3 | All | 0 |
M | 93 | L93L | ctC | ctG | 3 | 3 | AP.1 | 0.004505 |
M | 93 | L93L | ctC | ctT | 3 | 3 | AY.107 | 0.001398 |
M | 93 | L93L | ctC | ctT | 3 | 3 | AY.113 | 0.000427 |
M | 93 | L93I | Ctc | Atc | 3 | 3 | AY.25 | 0.000018 |
M | 93 | L93L | ctC | ctT | 3 | 3 | AY.46.1 | 0.00308 |
M | 93 | L93del | CTC | --- | 3 | 3 | AY.46.3 | 0.002801 |
M | 93 | L93L | ctC | ctT | 3 | 3 | AY.46.6 | 0.000217 |
M | 93 | L93L | ctC | ctT | 3 | 3 | AY.5.4 | 0.00083 |
M | 93 | L93L | ctC | ctT | 3 | 3 | AY.53 | 0.000863 |
M | 93 | L93L | ctC | ctT | 3 | 3 | AY.84 | 0.001312 |
M | 93 | L93I | Ctc | Atc | 3 | 3 | B.1 | 0.000027 |
M | 93 | L93del1 | Ctc | -tc | 1 | 3 | B.1 | 0.000009 |
M | 93 | L93del1 | ctC | ct- | 1 | 3 | B.1 | 0.000009 |
M | 93 | L93del1 | cTc | c-c | 1 | 3 | B.1 | 0.000009 |
M | 93 | L93L | ctC | ctT | 3 | 3 | B.1.1.176 | 0.001318 |
M | 93 | L93L | ctC | ctT | 3 | 3 | B.1.1.192 | 0.006928 |
M | 93 | L93L | ctC | ctT | 3 | 3 | B.1.1.207 | 0.003546 |
M | 93 | L93L | ctC | ctT | 3 | 3 | B.1.1.216 | 0.002671 |
M | 93 | L93L | ctC | ctT | 3 | 3 | B.1.1.225 | 0.021583 |
M | 93 | L93L | ctC | ctT | 2 | 3 | B.1.1.25 | 0.001137 |
M | 93 | L93L | ctC | ctG | 1 | 3 | B.1.1.25 | 0.000569 |
M | 93 | L93L | ctC | ctG | 3 | 3 | B.1.1.311 | 0.001074 |
M | 93 | L93L | ctC | ctG | 3 | 3 | B.1.1.315 | 0.025424 |
M | 93 | L93del | CTC | --- | 3 | 3 | B.1.1.343 | 0.0625 |
M | 93 | L93L | ctC | ctT | 3 | 3 | B.1.1.351 | 0.00838 |
M | 93 | L93F | Ctc | Ttc | 3 | 3 | B.1.1.368 | 0.009259 |
M | 93 | L93L | ctC | ctT | 3 | 3 | B.1.1.369 | 0.001339 |
M | 93 | L93L | ctC | ctT | 3 | 3 | B.1.1.389 | 0.018182 |
M | 93 | L93L | ctC | ctT | 3 | 3 | B.1.1.50 | 0.002037 |
M | 93 | L93F | Ctc | Ttc | 3 | 3 | B.1.1.519 | 0.000119 |
M | 93 | L93L | ctC | ctG | 2 | 3 | B.1.1.521 | 0.010695 |
M | 93 | L93L | ctC | ctT | 1 | 3 | B.1.1.521 | 0.005348 |
M | 93 | L93L | ctC | ctG | 3 | 3 | B.1.160.14 | 0.006356 |
M | 93 | L93F | Ctc | Ttc | 3 | 3 | B.1.2 | 0.000026 |
M | 93 | L93L | ctC | ctT | 3 | 3 | B.1.311 | 0.000824 |
M | 93 | L93L | ctC | ctT | 3 | 3 | B.1.324 | 0.004815 |
M | 93 | L93L | ctC | ctT | 3 | 3 | B.1.337 | 0.01676 |
M | 93 | L93L | ctC | ctT | 3 | 3 | B.1.36.16 | 0.004274 |
M | 93 | L93L | ctC | ctG | 2 | 3 | B.1.36.17 | 0.000988 |
M | 93 | L93L | ctC | ctT | 1 | 3 | B.1.36.17 | 0.000494 |
M | 93 | L93L | ctC | ctG | 3 | 3 | B.1.375 | 0.002459 |
M | 93 | L93L | ctC | ctT | 3 | 3 | B.1.413 | 0.012766 |
M | 93 | L93L | ctC | ctA | 3 | 3 | B.1.459 | 0.012245 |
M | 93 | L93L | ctC | ctT | 3 | 3 | B.1.549 | 0.021583 |
M | 93 | L93L | ctC | ctT | 3 | 3 | B.1.565 | 0.002431 |
M | 93 | L93L | ctC | ctT | 3 | 3 | B.1.582 | 0.001472 |
M | 93 | L93del | CTC | --- | 3 | 3 | B.1.617.2 | 0.000011 |
M | 93 | L93L | ctC | ctT | 3 | 3 | B.1.619.1 | 0.001924 |
M | 93 | L93L | ctC | ctT | 3 | 3 | B.1.621.1 | 0.001517 |
M | 93 | L93L | ctC | ctT | 3 | 3 | C.36 | 0.002732 |
M | 93 | L93del | CTC | --- | 3 | 3 | D.2 | 0.000225 |
M | 93 | L93L | ctC | ctT | 3 | 3 | N.5 | 0.0053 |
M | 93 | L93F | Ctc | Ttc | 3 | 3 | P.1 | 0.000047 |
M | 93 | L93L | ctC | ctT | 3 | 3 | P.1.13 | 0.002695 |
M | 93 | L93L | ctC | ctT | 3 | 3 | Q.4 | 0.001364 |
M | 93 | L93del | CTC | --- | 2 | 2 | 0.111111 | |
M | 93 | L93F | Ctc | Ttc | 2 | 2 | 0.111111 | |
M | 93 | L93P | cTC | cCT | 1 | 2 | 0.055556 | |
M | 93 | L93A | CTc | GCc | 1 | 2 | 0.055556 | |
M | 93 | L93P | cTc | cCc | 1 | 2 | 0.055556 | |
M | 93 | L93A | CTC | GCT | 1 | 2 | 0.055556 | |
M | 93 | L93V | CtC | GtT | 1 | 2 | 0.055556 | |
M | 93 | L93V | Ctc | Gtc | 1 | 2 | 0.055556 | |
M | 93 | L93L | ctC | ctG | 1 | 2 | A.21 | 0.00277 |
M | 93 | L93L | ctC | ctT | 1 | 2 | A.21 | 0.00277 |
M | 93 | L93L | ctC | ctT | 2 | 2 | A.3 | 0.004193 |
M | 93 | L93S | CTc | TCc | 2 | 2 | All | 0 |
M | 93 | L93A | CTc | GCc | 1 | 2 | All | 0 |
M | 93 | L93A | CTC | GCT | 1 | 2 | All | 0 |
M | 93 | L93L | ctC | ctT | 2 | 2 | AY.101 | 0.000981 |
M | 93 | L93L | ctC | ctT | 2 | 2 | AY.116 | 0.000574 |
M | 93 | L93L | ctC | ctT | 2 | 2 | AY.116.1 | 0.000623 |
M | 93 | L93F | Ctc | Ttc | 2 | 2 | AY.120.1 | 0.000642 |
M | 93 | L93del | CTC | --- | 2 | 2 | AY.13 | 0.000322 |
M | 93 | L93L | ctC | ctT | 2 | 2 | AY.2 | 0.000712 |
M | 93 | L93F | Ctc | Ttc | 2 | 2 | AY.20 | 0.000078 |
M | 93 | L93L | ctC | ctT | 2 | 2 | AY.24 | 0.000862 |
M | 93 | L93L | ctC | ctT | 2 | 2 | AY.29.1 | 0.000441 |
M | 93 | L93F | Ctc | Ttc | 2 | 2 | AY.34.1 | 0.00102 |
M | 93 | L93L | ctC | ctT | 2 | 2 | AY.34.1 | 0.00102 |
M | 93 | L93L | ctC | ctT | 2 | 2 | AY.37 | 0.000632 |
M | 93 | L93P | cTc | cCc | 2 | 2 | AY.4 | 0.000003 |
M | 93 | L93F | Ctc | Ttc | 2 | 2 | AY.4.2 | 0.000043 |
M | 93 | L93F | Ctc | Ttc | 2 | 2 | AY.43 | 0.000009 |
M | 93 | L93S | CTc | TCc | 2 | 2 | AY.44 | 0.000012 |
M | 93 | L93del | CTC | --- | 2 | 2 | AY.45 | 0.000243 |
M | 93 | L93L | ctC | ctT | 2 | 2 | AY.46.2 | 0.001271 |
M | 93 | L93L | ctC | ctT | 2 | 2 | AY.46.5 | 0.000397 |
M | 93 | L93del | CTC | --- | 2 | 2 | AY.47 | 0.000062 |
M | 93 | L93L | ctC | ctT | 2 | 2 | AY.49 | 0.00639 |
M | 93 | L93L | ctC | ctT | 2 | 2 | AY.60 | 0.001876 |
M | 93 | L93I | Ctc | Atc | 2 | 2 | AY.61 | 0.00021 |
M | 93 | L93L | ctC | ctT | 2 | 2 | AY.65 | 0.001066 |
M | 93 | L93I | CtC | AtA | 1 | 2 | AY.67 | 0.000464 |
M | 93 | L93I | CtC | AtT | 1 | 2 | AY.67 | 0.000464 |
M | 93 | L93L | ctC | ctT | 2 | 2 | AY.75.1 | 0.000361 |
M | 93 | L93L | ctC | ctT | 2 | 2 | AY.88 | 0.001768 |
M | 93 | L93L | ctC | ctT | 2 | 2 | AY.91 | 0.001461 |
M | 93 | L93L | ctC | ctT | 2 | 2 | B.1.1.160 | 0.047619 |
M | 93 | L93L | ctC | ctG | 1 | 2 | B.1.1.189 | 0.001513 |
M | 93 | L93L | ctC | ctT | 1 | 2 | B.1.1.189 | 0.001513 |
M | 93 | L93L | ctC | ctT | 2 | 2 | B.1.1.263 | 0.003115 |
M | 93 | L93L | ctC | ctT | 2 | 2 | B.1.1.274 | 0.010101 |
M | 93 | L93L | ctC | ctT | 2 | 2 | B.1.1.285 | 0.013072 |
M | 93 | L93L | ctC | ctT | 2 | 2 | B.1.1.291 | 0.001485 |
M | 93 | L93L | ctC | ctT | 2 | 2 | B.1.1.406 | 0.012987 |
M | 93 | L93L | ctC | ctT | 2 | 2 | B.1.1.433 | 0.002849 |
M | 93 | L93L | ctC | ctT | 2 | 2 | B.1.1.435 | 0.068966 |
M | 93 | L93L | ctC | ctT | 2 | 2 | B.1.1.507 | 0.017391 |
M | 93 | L93L | ctC | ctT | 2 | 2 | B.1.1.524 | 0.041667 |
M | 93 | L93L | ctC | ctT | 2 | 2 | B.1.1.63 | 0.000772 |
M | 93 | L93L | ctC | ctT | 2 | 2 | B.1.13 | 0.004751 |
M | 93 | L93F | Ctc | Ttc | 2 | 2 | B.1.160 | 0.000062 |
M | 93 | L93L | ctC | ctG | 2 | 2 | B.1.160.10 | 0.016129 |
M | 93 | L93F | CtC | TtT | 2 | 2 | B.1.177.21 | 0.000153 |
M | 93 | L93L | ctC | ctG | 2 | 2 | B.1.236 | 0.004107 |
M | 93 | L93L | ctC | ctT | 2 | 2 | B.1.239 | 0.002442 |
M | 93 | L93del | CTC | --- | 2 | 2 | B.1.258 | 0.000133 |
M | 93 | L93del | CTC | --- | 2 | 2 | B.1.265 | 0.002541 |
M | 93 | L93L | ctC | ctT | 2 | 2 | B.1.320 | 0.002491 |
M | 93 | L93F | Ctc | Ttc | 2 | 2 | B.1.351 | 0.000059 |
M | 93 | L93L | ctC | ctT | 2 | 2 | B.1.36.8 | 0.002 |
M | 93 | L93L | ctC | ctT | 2 | 2 | B.1.362 | 0.003082 |
M | 93 | L93L | ctC | ctT | 2 | 2 | B.1.381 | 0.015625 |
M | 93 | L93del | CTC | --- | 2 | 2 | B.1.400 | 0.000858 |
M | 93 | L93F | Ctc | Ttc | 2 | 2 | B.1.401 | 0.016393 |
M | 93 | L93F | Ctc | Ttc | 2 | 2 | B.1.428 | 0.002041 |
M | 93 | L93L | ctC | ctT | 2 | 2 | B.1.466.2 | 0.000782 |
M | 93 | L93L | ctC | ctT | 2 | 2 | B.1.470 | 0.002809 |
M | 93 | L93L | ctC | ctT | 2 | 2 | B.1.474 | 0.003802 |
M | 93 | L93L | ctC | ctT | 2 | 2 | B.1.499 | 0.002101 |
M | 93 | L93L | ctC | ctT | 2 | 2 | B.1.524 | 0.002813 |
M | 93 | L93L | ctC | ctT | 2 | 2 | B.1.530 | 0.014286 |
M | 93 | L93L | ctC | ctG | 1 | 2 | B.1.540 | 0.009709 |
M | 93 | L93L | ctC | ctT | 1 | 2 | B.1.540 | 0.009709 |
M | 93 | L93L | ctC | ctT | 2 | 2 | B.1.543 | 0.02 |
M | 93 | L93F | Ctc | Ttc | 2 | 2 | B.1.576 | 0.001813 |
M | 93 | L93L | ctC | ctT | 2 | 2 | B.1.588 | 0.00182 |
M | 93 | L93L | ctC | ctT | 2 | 2 | B.1.595.1 | 0.011696 |
M | 93 | L93del | CTC | --- | 2 | 2 | B.1.596 | 0.000174 |
M | 93 | L93L | ctC | ctT | 2 | 2 | B.1.601 | 0.060606 |
M | 93 | L93L | ctC | ctT | 2 | 2 | B.1.620 | 0.001892 |
M | 93 | L93L | ctC | ctT | 2 | 2 | B.1.628 | 0.000705 |
M | 93 | L93L | ctC | ctG | 2 | 2 | C.30 | 0.003454 |
M | 93 | L93L | ctC | ctT | 2 | 2 | P.1.2 | 0.002312 |
M | 93 | L93F | Ctc | Ttc | 2 | 2 | P.2 | 0.000373 |
M | 93 | L93L | ctC | ctT | 2 | 2 | P.4 | 0.007605 |
M | 93 | L93L | ctC | ctT | 1 | 1 | A.18 | 0.05 |
M | 93 | L93L | ctC | ctT | 1 | 1 | A.2 | 0.000662 |
M | 93 | L93L | ctC | ctT | 1 | 1 | A.23.1 | 0.000704 |
M | 93 | L93L | ctC | ctT | 1 | 1 | A.27 | 0.001656 |
M | 93 | L93L | ctC | ctT | 1 | 1 | AD.1 | 0.004115 |
M | 93 | L93L | ctC | ctG | 1 | 1 | AF.1 | 0.037037 |
M | 93 | L93H | cTc | cAc | 1 | 1 | All | 0 |
M | 93 | L93N | CTc | AAc | 1 | 1 | All | 0 |
M | 93 | L93L | ctC | ctT | 1 | 1 | AU.3 | 0.00211 |
M | 93 | L93L | ctC | ctT | 1 | 1 | AY.1 | 0.000396 |
M | 93 | L93P | cTc | cCc | 1 | 1 | AY.100 | 0.000046 |
M | 93 | L93del | CTC | --- | 1 | 1 | AY.103 | 0.000006 |
M | 93 | L93F | Ctc | Ttc | 1 | 1 | AY.116.1 | 0.000311 |
M | 93 | L93F | Ctc | Ttc | 1 | 1 | AY.117 | 0.000085 |
M | 93 | L93del | CTC | --- | 1 | 1 | AY.118 | 0.000063 |
M | 93 | L93L | ctC | ctT | 1 | 1 | AY.12 | 0.000316 |
M | 93 | L93del | CTC | --- | 1 | 1 | AY.120 | 0.000037 |
M | 93 | L93L | ctC | ctT | 1 | 1 | AY.120.1 | 0.000321 |
M | 93 | L93L | ctC | ctT | 1 | 1 | AY.120.2.1 | 0.000498 |
M | 93 | L93I | Ctc | Atc | 1 | 1 | AY.14 | 0.000088 |
M | 93 | L93L | ctC | ctT | 1 | 1 | AY.15 | 0.002222 |
M | 93 | L93L | ctC | ctT | 1 | 1 | AY.16 | 0.00038 |
M | 93 | L93I | Ctc | Atc | 1 | 1 | AY.16 | 0.00038 |
M | 93 | L93F | Ctc | Ttc | 1 | 1 | AY.23 | 0.00007 |
M | 93 | L93F | Ctc | Ttc | 1 | 1 | AY.24 | 0.000431 |
M | 93 | L93del | CTC | --- | 1 | 1 | AY.26 | 0.000028 |
M | 93 | L93F | Ctc | Ttc | 1 | 1 | AY.28 | 0.00189 |
M | 93 | L93I | Ctc | Atc | 1 | 1 | AY.29 | 0.000016 |
M | 93 | L93del | CTC | --- | 1 | 1 | AY.34.1 | 0.00051 |
M | 93 | L93L | ctC | ctT | 1 | 1 | AY.35 | 0.000233 |
M | 93 | L93del | CTC | --- | 1 | 1 | AY.39 | 0.000025 |
M | 93 | L93del | CTC | --- | 1 | 1 | AY.4 | 0.000002 |
M | 93 | L93L | ctC | ctT | 1 | 1 | AY.4.1 | 0.000737 |
M | 93 | L93I | Ctc | Atc | 1 | 1 | AY.4.2 | 0.000022 |
M | 93 | L93F | Ctc | Ttc | 1 | 1 | AY.4.4 | 0.000409 |
M | 93 | L93I | Ctc | Atc | 1 | 1 | AY.42 | 0.00004 |
M | 93 | L93N | CTc | AAc | 1 | 1 | AY.43 | 0.000004 |
M | 93 | L93I | Ctc | Atc | 1 | 1 | AY.43 | 0.000004 |
M | 93 | L93P | cTc | cCc | 1 | 1 | AY.43 | 0.000004 |
M | 93 | L93P | cTc | cCc | 1 | 1 | AY.44 | 0.000006 |
M | 93 | L93del | CTC | --- | 1 | 1 | AY.44 | 0.000006 |
M | 93 | L93I | Ctc | Atc | 1 | 1 | AY.46 | 0.000104 |
M | 93 | L93del | CTC | --- | 1 | 1 | AY.46 | 0.000104 |
M | 93 | L93F | Ctc | Ttc | 1 | 1 | AY.46.4 | 0.000165 |
M | 93 | L93L | ctC | ctT | 1 | 1 | AY.48 | 0.000465 |
M | 93 | L93F | Ctc | Ttc | 1 | 1 | AY.5 | 0.000021 |
M | 93 | L93L | ctC | ctT | 1 | 1 | AY.58 | 0.000907 |
M | 93 | L93L | ctC | ctT | 1 | 1 | AY.59 | 0.00053 |
M | 93 | L93F | Ctc | Ttc | 1 | 1 | AY.59 | 0.00053 |
M | 93 | L93del | CTC | --- | 1 | 1 | AY.60 | 0.000938 |
M | 93 | L93P | cTc | cCc | 1 | 1 | AY.62 | 0.000436 |
M | 93 | L93L | ctC | ctT | 1 | 1 | AY.62 | 0.000436 |
M | 93 | L93L | ctC | ctT | 1 | 1 | AY.63 | 0.000387 |
M | 93 | L93F | Ctc | Ttc | 1 | 1 | AY.65 | 0.000533 |
M | 93 | L93P | cTc | cCc | 1 | 1 | AY.67 | 0.000464 |
M | 93 | L93L | ctC | ctT | 1 | 1 | AY.7 | 0.000196 |
M | 93 | L93del | CTC | --- | 1 | 1 | AY.70 | 0.000209 |
M | 93 | L93L | ctC | ctT | 1 | 1 | AY.73 | 0.000665 |
M | 93 | L93L | ctC | ctT | 1 | 1 | AY.77 | 0.001127 |
M | 93 | L93L | ctC | ctT | 1 | 1 | AY.81 | 0.001992 |
M | 93 | L93L | ctC | ctT | 1 | 1 | AY.82 | 0.001357 |
M | 93 | L93L | ctC | ctT | 1 | 1 | AY.83 | 0.001724 |
M | 93 | L93F | Ctc | Ttc | 1 | 1 | AY.84 | 0.000437 |
M | 93 | L93L | ctC | ctT | 1 | 1 | AY.86 | 0.00083 |
M | 93 | L93F | Ctc | Ttc | 1 | 1 | AY.9 | 0.000068 |
M | 93 | L93L | ctC | ctT | 1 | 1 | AY.93 | 0.000273 |
M | 93 | L93L | ctC | ctT | 1 | 1 | AY.95 | 0.000761 |
M | 93 | L93del | CTC | --- | 1 | 1 | AY.98 | 0.000079 |
M | 93 | L93F | Ctc | Ttc | 1 | 1 | AZ.3 | 0.00152 |
M | 93 | L93del1 | cTc | c-c | 1 | 1 | B | 0.000128 |
M | 93 | L93V | Ctc | Gtc | 1 | 1 | B.1 | 0.000009 |
M | 93 | L93del | CTC | --- | 1 | 1 | B.1.1 | 0.000018 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.1.1.118 | 0.010204 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.1.1.128 | 0.007092 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.1.1.133 | 0.008475 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.1.1.141 | 0.002012 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.1.1.161 | 0.003534 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.1.1.162 | 0.029412 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.1.1.171 | 0.003676 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.1.1.174 | 0.003378 |
M | 93 | L93del | CTC | --- | 1 | 1 | B.1.1.207 | 0.001182 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.1.1.219 | 0.005 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.1.1.220 | 0.001859 |
M | 93 | L93del | CTC | --- | 1 | 1 | B.1.1.221 | 0.010101 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.1.1.241 | 0.00207 |
M | 93 | L93F | Ctc | Ttc | 1 | 1 | B.1.1.284 | 0.000107 |
M | 93 | L93del | CTC | --- | 1 | 1 | B.1.1.288 | 0.001916 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.1.1.294 | 0.001266 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.1.1.304 | 0.002809 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.1.1.312 | 0.001912 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.1.1.368 | 0.003086 |
M | 93 | L93P | cTc | cCc | 1 | 1 | B.1.1.371 | 0.010417 |
M | 93 | L93del | CTC | --- | 1 | 1 | B.1.1.372 | 0.000689 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.1.1.374 | 0.002375 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.1.1.376 | 0.005952 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.1.1.377 | 0.001381 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.1.1.382 | 0.035714 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.1.1.397 | 0.002252 |
M | 93 | L93L | ctC | ctG | 1 | 1 | B.1.1.409 | 0.002833 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.1.1.413 | 0.006897 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.1.1.420 | 0.001006 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.1.1.421 | 0.030303 |
M | 93 | L93F | Ctc | Ttc | 1 | 1 | B.1.1.434 | 0.000349 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.1.1.44 | 0.00241 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.1.1.459 | 0.015385 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.1.1.46 | 0.004367 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.1.1.463 | 0.0625 |
M | 93 | L93L | ctC | ctG | 1 | 1 | B.1.1.47 | 0.005348 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.1.1.51 | 0.001718 |
M | 93 | L93del | CTC | --- | 1 | 1 | B.1.1.519 | 0.00004 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.1.1.54 | 0.003021 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.1.1.61 | 0.008772 |
M | 93 | L93I | Ctc | Atc | 1 | 1 | B.1.1.7 | 0.000001 |
M | 93 | L93P | cTc | cCc | 1 | 1 | B.1.1.7 | 0.000001 |
M | 93 | L93del2 | cTC | c-- | 1 | 1 | B.1.1.7 | 0.000001 |
M | 93 | L93del | CTC | --- | 1 | 1 | B.1.1.70 | 0.000341 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.1.110.3 | 0.000718 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.1.128 | 0.000635 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.1.143 | 0.021277 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.1.157 | 0.002985 |
M | 93 | L93del1 | ctC | ct- | 1 | 1 | B.1.160 | 0.000031 |
M | 93 | L93L | ctC | ctG | 1 | 1 | B.1.160.12 | 0.00641 |
M | 93 | L93del | CTC | --- | 1 | 1 | B.1.160.16 | 0.000929 |
M | 93 | L93del | CTC | --- | 1 | 1 | B.1.161 | 0.017241 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.1.170 | 0.00431 |
M | 93 | L93F | Ctc | Ttc | 1 | 1 | B.1.177 | 0.000013 |
M | 93 | L93del | CTC | --- | 1 | 1 | B.1.177.12 | 0.000152 |
M | 93 | L93I | CtC | AtT | 1 | 1 | B.1.177.21 | 0.000076 |
M | 93 | L93del | CTC | --- | 1 | 1 | B.1.177.73 | 0.000566 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.1.182 | 0.007246 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.1.189 | 0.004292 |
M | 93 | L93del2 | CTc | --c | 1 | 1 | B.1.2 | 0.000009 |
M | 93 | L93P | cTc | cCc | 1 | 1 | B.1.2 | 0.000009 |
M | 93 | L93F | Ctc | Ttc | 1 | 1 | B.1.221 | 0.000071 |
M | 93 | L93F | Ctc | Ttc | 1 | 1 | B.1.234 | 0.000132 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.1.235 | 0.002519 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.1.256 | 0.017241 |
M | 93 | L93del | CTC | --- | 1 | 1 | B.1.258.11 | 0.000396 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.1.258.14 | 0.00098 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.1.258.23 | 0.02381 |
M | 93 | L93del | CTC | --- | 1 | 1 | B.1.258.3 | 0.001675 |
M | 93 | L93L | ctC | ctG | 1 | 1 | B.1.281 | 0.021739 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.1.284 | 0.013158 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.1.3 | 0.002618 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.1.305 | 0.002151 |
M | 93 | L93L | ctC | ctG | 1 | 1 | B.1.326 | 0.007576 |
M | 93 | L93del | CTC | --- | 1 | 1 | B.1.329 | 0.000608 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.1.336 | 0.002439 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.1.349 | 0.000715 |
M | 93 | L93del | CTC | --- | 1 | 1 | B.1.351 | 0.00003 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.1.351.3 | 0.000876 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.1.36.10 | 0.004785 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.1.36.27 | 0.000763 |
M | 93 | L93H | cTc | cAc | 1 | 1 | B.1.36.29 | 0.000517 |
M | 93 | L93L | ctC | ctG | 1 | 1 | B.1.36.35 | 0.002604 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.1.36.7 | 0.004 |
M | 93 | L93L | ctC | ctG | 1 | 1 | B.1.36.9 | 0.003215 |
M | 93 | L93I | Ctc | Atc | 1 | 1 | B.1.361 | 0.001289 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.1.361 | 0.001289 |
M | 93 | L93L | ctC | ctG | 1 | 1 | B.1.367 | 0.000792 |
M | 93 | L93P | cTc | cCc | 1 | 1 | B.1.367 | 0.000792 |
M | 93 | L93F | Ctc | Ttc | 1 | 1 | B.1.369 | 0.000285 |
M | 93 | L93L | ctC | ctG | 1 | 1 | B.1.379 | 0.017241 |
M | 93 | L93L | ctC | ctG | 1 | 1 | B.1.389 | 0.001002 |
M | 93 | L93L | ctC | ctG | 1 | 1 | B.1.391 | 0.001127 |
M | 93 | L93P | cTc | cCc | 1 | 1 | B.1.396 | 0.000706 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.1.399 | 0.001934 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.1.401 | 0.008197 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.1.426 | 0.001009 |
M | 93 | L93F | Ctc | Ttc | 1 | 1 | B.1.427 | 0.00005 |
M | 93 | L93del | CTC | --- | 1 | 1 | B.1.429 | 0.000024 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.1.435 | 0.011364 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.1.436 | 0.001029 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.1.438.1 | 0.000107 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.1.444 | 0.015873 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.1.448 | 0.002625 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.1.456 | 0.003268 |
M | 93 | L93del | CTC | --- | 1 | 1 | B.1.459 | 0.004082 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.1.471 | 0.002732 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.1.505 | 0.004386 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.1.511 | 0.034483 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.1.520 | 0.021739 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.1.523 | 0.002451 |
M | 93 | L93I | Ctc | Atc | 1 | 1 | B.1.526 | 0.000024 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.1.527 | 0.003704 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.1.538 | 0.008065 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.1.545 | 0.014493 |
M | 93 | L93P | cTc | cCc | 1 | 1 | B.1.551 | 0.00129 |
M | 93 | L93del | CTC | --- | 1 | 1 | B.1.561 | 0.000397 |
M | 93 | L93P | cTc | cCc | 1 | 1 | B.1.564 | 0.000426 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.1.575.2 | 0.004808 |
M | 93 | L93L | ctC | ctG | 1 | 1 | B.1.576 | 0.000907 |
M | 93 | L93del | CTC | --- | 1 | 1 | B.1.577 | 0.000687 |
M | 93 | L93L | ctC | ctG | 1 | 1 | B.1.581 | 0.009434 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.1.587 | 0.001898 |
M | 93 | L93F | Ctc | Ttc | 1 | 1 | B.1.595 | 0.000261 |
M | 93 | L93del | CTC | --- | 1 | 1 | B.1.595 | 0.000261 |
M | 93 | L93del2 | CTc | --c | 1 | 1 | B.1.596 | 0.000087 |
M | 93 | L93L | ctC | ctG | 1 | 1 | B.1.599 | 0.00365 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.1.606 | 0.006024 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.1.612 | 0.002653 |
M | 93 | L93del | CTC | --- | 1 | 1 | B.1.617.1 | 0.000129 |
M | 93 | L93P | cTc | cCc | 1 | 1 | B.1.617.2 | 0.000004 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.1.625 | 0.002353 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.1.627 | 0.00202 |
M | 93 | L93del | CTC | --- | 1 | 1 | B.1.627 | 0.00202 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.1.634 | 0.003425 |
M | 93 | L93F | Ctc | Ttc | 1 | 1 | B.1.637 | 0.000073 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.1.81 | 0.021277 |
M | 93 | L93del | CTC | --- | 1 | 1 | B.1.91 | 0.002075 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.23 | 0.002924 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.31 | 0.003731 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.35 | 0.007812 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.52 | 0.010101 |
M | 93 | L93L | ctC | ctT | 1 | 1 | B.6 | 0.00091 |
M | 93 | L93L | ctC | ctT | 1 | 1 | C.30.1 | 0.006711 |
M | 93 | L93L | ctC | ctT | 1 | 1 | C.4 | 0.01 |
M | 93 | L93F | Ctc | Ttc | 1 | 1 | D.2 | 0.000075 |
M | 93 | L93L | ctC | ctG | 1 | 1 | K.1 | 0.02381 |
M | 93 | L93L | ctC | ctT | 1 | 1 | N.4 | 0.004255 |
M | 93 | L93del | CTC | --- | 1 | 1 | P.1 | 0.000016 |
M | 93 | L93L | ctC | ctT | 1 | 1 | P.1.1 | 0.000318 |
M | 93 | L93L | ctC | ctT | 1 | 1 | P.1.11 | 0.010204 |
M | 93 | L93F | Ctc | Ttc | 1 | 1 | P.1.15 | 0.000232 |
M | 93 | L93del | CTC | --- | 1 | 1 | P.1.15 | 0.000232 |
M | 93 | L93L | ctC | ctT | 1 | 1 | P.3 | 0.001595 |
M | 93 | L93I | Ctc | Atc | 1 | 1 | Q.4 | 0.000455 |
M | 93 | L93L | ctC | ctT | 1 | 1 | Q.7 | 0.001111 |
M | 93 | L93del | CTC | --- | 1 | 1 | Z.1 | 0.00289 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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