CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = M : CodonNum = 90

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
M90L90LsynTtgCtg3432100.61224526790-26792
M90L90LsynttGttA3431330.38775526790-26792
M90L90FnonsynttGttT3283190.97256126790-26792
M90L90FnonsynttGttC32890.02743926790-26792
M90L90deldelTTG---232232126790-26792
M90L90SnonsyntTgtCg71700.98591526790-26792
M90L90SnonsyntTGtCC7110.014084526790-26792
M90L90VnonsynTtgGtg1111126790-26792
M90L90MnonsynTtgAtg99126790-26792
M90L90WnonsyntTgtGg44126790-26792
M90L90XnonsyntTgtAg22126790-26792
M90L90CnonsyntTGtGT22126790-26792
M90L90PnonsynTTgCCg11126790-26792
M90L90del1delttGtt-11126790-26792
M90L90TnonsynTTgACg11126790-26792
M90L90del2delTTg--g11126790-26792
M90L90InonsynTtGAtT11126790-26792

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
M90L90LTtgCtg210343All0.00004
M90L90LttGttA133343All0.000025
M90L90FttGttT319328All0.000061
M90L90FttGttC9328All0.000002
M90L90delTTG---232232All0.000044
M90L90FttGttT9799B.1.1.70.000087
M90L90FttGttC299B.1.1.70.000002
M90L90LTtgCtg8989B.1.1600.002776
M90L90StTgtCg7071All0.000013
M90L90StTGtCC171All0
M90L90delTTG---6161B.1.1.70.000055
M90L90delTTG---5959B.1.177.210.004512
M90L90StTgtCg4747B.1.1.70.000042
M90L90FttGttT4343AY.1030.000267
M90L90LttGttA3843B.1.1.70.000034
M90L90LTtgCtg543B.1.1.70.000004
M90L90delTTG---2525B.10.000229
M90L90LttGttA1822AY.440.00011
M90L90LTtgCtg422AY.440.000024
M90L90LttGttA1519B.1.2580.000998
M90L90LTtgCtg419B.1.2580.000266
M90L90LTtgCtg1418B.1.617.20.000053
M90L90LttGttA418B.1.617.20.000015
M90L90LTtgCtg1215AY.30.000119
M90L90LttGttA315AY.30.00003
M90L90LttGttA1015AY.40.000016
M90L90LTtgCtg515AY.40.000008
M90L90FttGttT1414AY.430.000062
M90L90FttGttT1313B.10.000119
M90L90FttGttT1313B.1.5160.02544
M90L90FttGttT1212B.1.1.880.857143
M90L90LTtgCtg1212B.1.160.200.107143
M90L90FttGttT1112B.1.617.20.000041
M90L90FttGttC112B.1.617.20.000004
M90L90VTtgGtg1111All0.000002
M90L90LTtgCtg610AY.430.000027
M90L90LttGttA410AY.430.000018
M90L90LTtgCtg1010B.1.20.000088
M90L90MTtgAtg99All0.000002
M90L90LTtgCtg68B.10.000055
M90L90LttGttA28B.10.000018
M90L90LttGttA88B.1.5260.000188
M90L90FttGttT77AY.1020.000186
M90L90LTtgCtg77AY.1210.000947
M90L90FttGttT77AY.40.000011
M90L90FttGttT77B.1.1.4020.077778
M90L90LTtgCtg67B.1.6210.000531
M90L90LttGttA17B.1.6210.000089
M90L90FttGttT77P.1.140.000335
M90L90FttGttT66AY.30.00006
M90L90FttGttT56B.1.10.000091
M90L90FttGttC16B.1.10.000018
M90L90FttGttT46B.1.20.000035
M90L90FttGttC26B.1.20.000018
M90L90FttGttT55AY.250.00003
M90L90delTTG---55AY.430.000022
M90L90FttGttT55B.1.1.1530.005476
M90L90WtTgtGg44All0.000001
M90L90LttGttA34AY.1020.00008
M90L90LTtgCtg14AY.1020.000027
M90L90FttGttT44AY.200.000155
M90L90delTTG---44AY.250.000024
M90L90LTtgCtg44AY.250.000024
M90L90StTgtCg44AY.40.000006
M90L90FttGttT44AY.4.20.000087
M90L90delTTG---44AY.99.20.000369
M90L90delTTG---44B.1.20.000035
M90L90FttGttT44B.1.4270.000202
M90L90LttGttA23AY.1030.000012
M90L90LTtgCtg13AY.1030.000006
M90L90FttGttT33AY.16.10.00141
M90L90StTgtCg33AY.260.000085
M90L90FttGttT33AY.390.000074
M90L90delTTG---33AY.46.30.002801
M90L90LttGttA33AY.46.60.000217
M90L90StTgtCg33AY.610.000314
M90L90LTtgCtg33AY.850.001282
M90L90LTtgCtg23B.1.10.000036
M90L90LttGttA13B.1.10.000018
M90L90delTTG---33B.1.1.3430.0625
M90L90delTTG---33B.1.1600.000094
M90L90delTTG---33B.1.1770.00004
M90L90FttGttT33B.1.3510.000089
M90L90WtTgtGg33B.1.4800.007463
M90L90FttGttT33B.1.5260.000071
M90L90delTTG---33B.1.5960.000261
M90L90StTgtCg33B.1.617.20.000011
M90L90delTTG---33B.1.617.20.000011
M90L90FttGttT33C.370.000348
M90L90delTTG---33D.20.000225
M90L90LttGttA33P.10.000047
M90L90FttGttC220.111111
M90L90delTTG---220.111111
M90L90CtTGtGT220.111111
M90L90XtTgtAg22All0
M90L90CtTGtGT22All0
M90L90LttGttA22AY.10.000791
M90L90LTtgCtg22AY.1200.000074
M90L90delTTG---22AY.130.000322
M90L90StTgtCg22AY.270.000129
M90L90FttGttC12AY.320.000532
M90L90FttGttT12AY.320.000532
M90L90FttGttT22AY.360.000296
M90L90FttGttT22AY.4.50.000215
M90L90delTTG---22AY.450.000243
M90L90delTTG---22AY.470.000062
M90L90FttGttT22AY.670.000929
M90L90LTtgCtg22AY.75.10.000361
M90L90delTTG---22AY.75.10.000361
M90L90MTtgAtg22AY.75.10.000361
M90L90VTtgGtg22AY.980.000158
M90L90FttGttT22B0.000256
M90L90MTtgAtg22B.10.000018
M90L90MTtgAtg22B.1.1.70.000002
M90L90LTtgCtg22B.1.2210.000142
M90L90delTTG---22B.1.2650.002541
M90L90delTTG---22B.1.4000.000858
M90L90VTtgGtg22B.1.5260.000047
M90L90FttGttT22P.10.000032
M90L90FttGttT11AD.20.000219
M90L90PTTgCCg11All0
M90L90ITtGAtT11All0
M90L90TTTgACg11All0
M90L90del1ttGtt-11All0
M90L90del2TTg--g11All0
M90L90delTTG---11AY.1030.000006
M90L90LTtgCtg11AY.1060.000335
M90L90VTtgGtg11AY.1070.000466
M90L90FttGttT11AY.1170.000085
M90L90FttGttT11AY.1180.000063
M90L90delTTG---11AY.1180.000063
M90L90LttGttA11AY.1190.000035
M90L90delTTG---11AY.1200.000037
M90L90LTtgCtg11AY.120.10.000321
M90L90FttGttT11AY.230.00007
M90L90StTgtCg11AY.250.000006
M90L90delTTG---11AY.260.000028
M90L90LttGttA11AY.260.000028
M90L90LTtgCtg11AY.270.000065
M90L90StTgtCg11AY.290.000016
M90L90FttGttT11AY.290.000016
M90L90MTtgAtg11AY.290.000016
M90L90LttGttA11AY.3.10.000085
M90L90delTTG---11AY.34.10.00051
M90L90delTTG---11AY.390.000025
M90L90LTtgCtg11AY.390.000025
M90L90FttGttT11AY.39.10.00004
M90L90MTtgAtg11AY.39.10.00004
M90L90delTTG---11AY.40.000002
M90L90StTgtCg11AY.430.000004
M90L90delTTG---11AY.440.000006
M90L90FttGttT11AY.440.000006
M90L90delTTG---11AY.460.000104
M90L90StTgtCg11AY.470.000031
M90L90LttGttA11AY.50.000021
M90L90FttGttT11AY.50.000021
M90L90LTtgCtg11AY.5.30.000337
M90L90LttGttA11AY.540.000095
M90L90LttGttA11AY.550.000917
M90L90FttGttT11AY.590.00053
M90L90delTTG---11AY.600.000938
M90L90FttGttT11AY.610.000105
M90L90del2TTg--g11AY.670.000464
M90L90LttGttA11AY.680.000274
M90L90delTTG---11AY.700.000209
M90L90FttGttT11AY.750.000056
M90L90LTtgCtg11AY.750.000056
M90L90LttGttA11AY.9.20.000037
M90L90delTTG---11AY.980.000079
M90L90LttGttA11AY.990.001049
M90L90StTgtCg11B0.000128
M90L90XtTgtAg11B0.000128
M90L90LTtgCtg11B0.000128
M90L90StTgtCg11B.10.000009
M90L90delTTG---11B.1.10.000018
M90L90ITtGAtT11B.1.10.000018
M90L90VTtgGtg11B.1.10.000018
M90L90LTtgCtg11B.1.1.2070.001182
M90L90delTTG---11B.1.1.2070.001182
M90L90delTTG---11B.1.1.2210.010101
M90L90LttGttA11B.1.1.280.000311
M90L90delTTG---11B.1.1.2880.001916
M90L90FttGttT11B.1.1.3110.000358
M90L90delTTG---11B.1.1.3720.000689
M90L90FttGttT11B.1.1.4320.001266
M90L90PTTgCCg11B.1.1.70.000001
M90L90VTtgGtg11B.1.1.70.000001
M90L90delTTG---11B.1.1.700.000341
M90L90FttGttT11B.1.1.710.006061
M90L90XtTgtAg11B.1.1600.000031
M90L90delTTG---11B.1.160.160.000929
M90L90LTtgCtg11B.1.160.70.002079
M90L90delTTG---11B.1.1610.017241
M90L90LTtgCtg11B.1.1770.000013
M90L90VTtgGtg11B.1.1770.000013
M90L90TTTgACg11B.1.177.210.000076
M90L90LttGttA11B.1.177.210.000076
M90L90del1ttGtt-11B.1.177.540.000606
M90L90delTTG---11B.1.177.730.000566
M90L90FttGttT11B.1.214.20.0006
M90L90FttGttT11B.1.2210.000071
M90L90FttGttT11B.1.2580.000067
M90L90delTTG---11B.1.2580.000067
M90L90WtTgtGg11B.1.2580.000067
M90L90VTtgGtg11B.1.258.100.011364
M90L90delTTG---11B.1.258.110.000396
M90L90LTtgCtg11B.1.3260.007576
M90L90delTTG---11B.1.3290.000608
M90L90LttGttA11B.1.3340.018182
M90L90delTTG---11B.1.3510.00003
M90L90LttGttA11B.1.351.50.0006
M90L90LttGttA11B.1.360.000146
M90L90StTgtCg11B.1.36.310.001751
M90L90LttGttA11B.1.36.350.002604
M90L90FttGttT11B.1.3910.001127
M90L90FttGttT11B.1.4290.000024
M90L90delTTG---11B.1.4290.000024
M90L90LttGttA11B.1.4290.000024
M90L90delTTG---11B.1.4590.004082
M90L90FttGttT11B.1.5240.001406
M90L90StTGtCC11B.1.5380.008065
M90L90delTTG---11B.1.5610.000397
M90L90FttGttT11B.1.5770.000687
M90L90delTTG---11B.1.5770.000687
M90L90delTTG---11B.1.5950.000261
M90L90delTTG---11B.1.617.10.000129
M90L90MTtgAtg11B.1.617.20.000004
M90L90FttGttT11B.1.6210.000089
M90L90delTTG---11B.1.6270.00202
M90L90delTTG---11B.1.910.002075
M90L90LTtgCtg11B.40.002208
M90L90LTtgCtg11B.400.000364
M90L90VTtgGtg11D.20.000075
M90L90delTTG---11P.10.000016
M90L90delTTG---11P.1.150.000232
M90L90StTgtCg11P.1.150.000232
M90L90FttGttT11P.1.170.000162
M90L90FttGttT11P.70.004367
M90L90FttGttT11Q.60.006623
M90L90VTtgGtg11R.10.00009