CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = M : CodonNum = 9

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
M9T9TsynacCacT236922960.96918526547-26549
M9T9TsynacCacA2369680.028704126547-26549
M9T9TsynacCacG236950.002110626547-26549
M9T9deldelACC---4444126547-26549
M9T9NnonsynaCcaAc3333126547-26549
M9T9SnonsynAccTcc28250.89285726547-26549
M9T9SnonsynaCcaGc2830.10714326547-26549
M9T9InonsynaCcaTc1414126547-26549
M9T9AnonsynAccGcc88126547-26549
M9T9PnonsynAccCcc33126547-26549
M9T9RnonsynaCCaGG11126547-26549
M9T9LnonsynACcCTc11126547-26549

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
M9T9TacCacT22962369All0.000439
M9T9TacCacA682369All0.000013
M9T9TacCacG52369All0.000001
M9T9TacCacT411423AY.40.00064
M9T9TacCacA12423AY.40.000019
M9T9TacCacT354361B.1.1.70.000317
M9T9TacCacA7361B.1.1.70.000006
M9T9TacCacT259259B.1.5990.945255
M9T9TacCacT218218B.1.20.00192
M9T9TacCacT159162B.1.617.20.000599
M9T9TacCacA3162B.1.617.20.000011
M9T9TacCacT9898B.1.5300.7
M9T9TacCacT8080B.10.000733
M9T9TacCacT7272AY.360.010671
M9T9TacCacT4949P.1.70.015645
M9T9TacCacT3247AY.1030.000199
M9T9TacCacA1547AY.1030.000093
M9T9TacCacT4747AY.440.000286
M9T9delACC---4444All0.000008
M9T9TacCacT4040AY.120.10.012841
M9T9NaCcaAc3333All0.000006
M9T9TacCacT3232AY.430.000142
M9T9TacCacT2929B.1.2340.003826
M9T9SAccTcc2528All0.000005
M9T9SaCcaGc328All0.000001
M9T9TacCacT2828B.1.2430.001948
M9T9TacCacT2525B.1.4290.000588
M9T9SAccTcc2222AY.330.001469
M9T9TacCacT1822B.1.3510.000535
M9T9TacCacA422B.1.3510.000119
M9T9TacCacT1416AY.260.000396
M9T9TacCacA216AY.260.000057
M9T9TacCacT1215AY.290.000189
M9T9TacCacA315AY.290.000047
M9T9TacCacT1515AY.4.20.000325
M9T9TacCacT1515AY.980.001185
M9T9IaCcaTc1414All0.000003
M9T9NaCcaAc1212AY.250.000072
M9T9TacCacT1212AY.460.001249
M9T9TacCacT1212B.1.36.290.006208
M9T9TacCacT1010AY.160.003797
M9T9TacCacT910B.1.5260.000212
M9T9TacCacA110B.1.5260.000024
M9T9TacCacT99AY.230.000628
M9T9TacCacT79AY.250.000042
M9T9TacCacA29AY.250.000012
M9T9TacCacT99AY.390.000222
M9T9TacCacT99AY.420.000362
M9T9TacCacT89B.1.10.000145
M9T9TacCacA19B.1.10.000018
M9T9AAccGcc88All0.000002
M9T9TacCacT88B.1.1770.000105
M9T9NaCcaAc77AY.430.000031
M9T9TacCacT77AY.590.003708
M9T9TacCacT77B.40.015453
M9T9TacCacA77P.1.100.001886
M9T9TacCacT66AY.30.00006
M9T9TacCacT66B.1.177.210.000459
M9T9TacCacT66B.1.3110.001647
M9T9TacCacG36B.1.360.000438
M9T9TacCacT36B.1.360.000438
M9T9TacCacT66B.6.60.005333
M9T9TacCacT66P.10.000095
M9T9TacCacT55AY.1020.000133
M9T9TacCacT55AY.1190.000177
M9T9delACC---55AY.40.000008
M9T9delACC---55B.10.000046
M9T9TacCacT55B.1.1.250.002843
M9T9TacCacT55B.1.1.580.026882
M9T9TacCacT55B.1.258.170.00052
M9T9TacCacT24AY.4.50.000215
M9T9TacCacA24AY.4.50.000215
M9T9TacCacA24AY.50.000041
M9T9TacCacG14AY.50.000021
M9T9TacCacT14AY.50.000021
M9T9TacCacT24AY.750.000112
M9T9TacCacA24AY.750.000112
M9T9delACC---44B.1.1.70.000004
M9T9TacCacT44B.1.5960.000349
M9T9NaCcaAc44B.1.617.20.000015
M9T9TacCacT330.166667
M9T9PAccCcc33All0.000001
M9T9TacCacT33AY.1100.000338
M9T9TacCacT33AY.1180.000188
M9T9TacCacT33AY.1200.000112
M9T9TacCacT33AY.140.000264
M9T9delACC---33AY.250.000018
M9T9TacCacT33AY.9.20.00011
M9T9IaCcaTc33B.10.000027
M9T9NaCcaAc33B.1.1.70.000003
M9T9TacCacT33B.1.177.70.000495
M9T9TacCacT33B.1.466.20.001174
M9T9TacCacT33D.20.000225
M9T9TacCacT33Q.80.000495
M9T9delACC---220.111111
M9T9NaCcaAc22AY.1030.000012
M9T9TacCacT22AY.1150.010417
M9T9TacCacT22AY.130.000322
M9T9TacCacT22AY.270.000129
M9T9TacCacT22AY.34.10.00102
M9T9AAccGcc22AY.40.000003
M9T9TacCacT22AY.4.2.10.000298
M9T9delACC---22AY.430.000009
M9T9delACC---22AY.440.000012
M9T9TacCacT12AY.450.000122
M9T9TacCacA12AY.450.000122
M9T9TacCacA12AY.470.000031
M9T9TacCacT12AY.470.000031
M9T9TacCacT22AY.740.000231
M9T9TacCacT22AZ.20.001642
M9T9TacCacT22B.1.1.2140.000111
M9T9TacCacT22B.1.1.4530.016949
M9T9TacCacT22B.1.177.600.000437
M9T9TacCacT22B.1.2180.010309
M9T9TacCacT22B.1.2210.000142
M9T9TacCacT22B.1.3690.00057
M9T9delACC---22P.10.000032
M9T9TacCacG12P.1.10.000318
M9T9TacCacA12P.1.10.000318
M9T9TacCacT22P.1.170.000324
M9T9IaCcaTc22P.1.170.000324
M9T9TacCacT22R.10.00018
M9T9TacCacT11A0.000387
M9T9LACcCTc11All0
M9T9RaCCaGG11All0
M9T9TacCacT11AY.100.00053
M9T9TacCacT11AY.1000.000046
M9T9delACC---11AY.1000.000046
M9T9TacCacT11AY.1040.001984
M9T9TacCacT11AY.1070.000466
M9T9delACC---11AY.1080.001103
M9T9TacCacT11AY.1110.000183
M9T9TacCacT11AY.1170.000085
M9T9delACC---11AY.1180.000063
M9T9NaCcaAc11AY.1190.000035
M9T9TacCacT11AY.120.000316
M9T9delACC---11AY.1200.000037
M9T9PAccCcc11AY.140.000088
M9T9TacCacT11AY.29.10.000221
M9T9IaCcaTc11AY.30.00001
M9T9TacCacT11AY.320.000532
M9T9TacCacT11AY.330.000067
M9T9TacCacT11AY.340.000097
M9T9NaCcaAc11AY.34.10.00051
M9T9TacCacT11AY.380.000499
M9T9AAccGcc11AY.390.000025
M9T9NaCcaAc11AY.390.000025
M9T9PAccCcc11AY.40.000002
M9T9IaCcaTc11AY.40.000002
M9T9delACC---11AY.4.50.000107
M9T9SaCcaGc11AY.420.00004
M9T9SAccTcc11AY.440.000006
M9T9AAccGcc11AY.440.000006
M9T9TacCacT11AY.46.40.000165
M9T9delACC---11AY.46.60.000072
M9T9SAccTcc11AY.50.000021
M9T9TacCacT11AY.5.40.000277
M9T9delACC---11AY.60.000041
M9T9TacCacT11AY.60.000041
M9T9delACC---11AY.680.000274
M9T9TacCacT11AY.680.000274
M9T9TacCacT11AY.710.000475
M9T9TacCacT11AY.720.001361
M9T9delACC---11AY.750.000056
M9T9TacCacT11AY.75.10.00018
M9T9TacCacA11AY.790.001211
M9T9TacCacT11AY.90.000068
M9T9delACC---11AY.90.000068
M9T9AAccGcc11AY.9.20.000037
M9T9TacCacT11AY.920.000287
M9T9LACcCTc11B0.000128
M9T9SaCcaGc11B.10.000009
M9T9AAccGcc11B.10.000009
M9T9PAccCcc11B.1.10.000018
M9T9delACC---11B.1.1.1390.022727
M9T9TacCacT11B.1.1.2320.001815
M9T9IaCcaTc11B.1.1.280.000311
M9T9IaCcaTc11B.1.1.2820.011628
M9T9TacCacT11B.1.1.2840.000107
M9T9delACC---11B.1.1.2880.001916
M9T9TacCacT11B.1.1.3060.000438
M9T9TacCacT11B.1.1.370.000193
M9T9TacCacT11B.1.1.4340.000349
M9T9TacCacT11B.1.1.5260.003546
M9T9AAccGcc11B.1.1.70.000001
M9T9IaCcaTc11B.1.1.70.000001
M9T9SaCcaGc11B.1.1.70.000001
M9T9TacCacT11B.1.1390.000733
M9T9SAccTcc11B.1.1600.000031
M9T9IaCcaTc11B.1.1770.000013
M9T9delACC---11B.1.177.100.000878
M9T9delACC---11B.1.177.160.000664
M9T9delACC---11B.1.177.170.000821
M9T9NaCcaAc11B.1.177.230.003236
M9T9TacCacT11B.1.177.320.00135
M9T9TacCacT11B.1.177.450.000381
M9T9delACC---11B.1.177.830.001481
M9T9TacCacA11B.1.2220.001692
M9T9delACC---11B.1.230.006061
M9T9TacCacT11B.1.2400.000216
M9T9IaCcaTc11B.1.2580.000067
M9T9TacCacT11B.1.3020.013333
M9T9TacCacT11B.1.3240.001605
M9T9TacCacT11B.1.3320.003497
M9T9TacCacT11B.1.351.10.038462
M9T9TacCacT11B.1.3670.000792
M9T9TacCacT11B.1.3800.006623
M9T9TacCacT11B.1.4000.000429
M9T9NaCcaAc11B.1.416.10.001563
M9T9TacCacT11B.1.4170.028571
M9T9TacCacT11B.1.4270.00005
M9T9TacCacT11B.1.4380.006536
M9T9TacCacT11B.1.5670.003333
M9T9TacCacT11B.1.5820.000491
M9T9TacCacT11B.1.5950.000261
M9T9TacCacT11B.1.617.10.000129
M9T9IaCcaTc11B.1.617.20.000004
M9T9delACC---11B.1.617.20.000004
M9T9TacCacT11B.1.780.008547
M9T9TacCacT11B.1.9.50.005682
M9T9IaCcaTc11B.400.000364
M9T9TacCacT11C.37.10.002618
M9T9TacCacT11P.1.150.000232
M9T9delACC---11P.1.150.000232
M9T9AAccGcc11P.1.170.000162
M9T9TacCacT11P.20.000187
M9T9TacCacT11P.30.001595
M9T9TacCacT11Q.70.001111
M9T9RaCCaGG11Q.80.000165