CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = M : CodonNum = 87

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
M87L87FnonsynCttTtt211521140.99952726781-26783
M87L87FnonsynCtTTtC211510.00047281326781-26783
M87L87LsynctTctC2782060.74100726781-26783
M87L87LsynctTctA278670.24100726781-26783
M87L87LsynctTctG27850.017985626781-26783
M87L87deldelCTT---201201126781-26783
M87L87InonsynCttAtt158158126781-26783
M87L87VnonsynCttGtt1010126781-26783
M87L87PnonsyncTtcCt540.826781-26783
M87L87PnonsyncTTcCC510.226781-26783
M87L87SnonsynCTtTCt420.526781-26783
M87L87del1delctTct-420.526781-26783
M87L87SnonsynCTTTCG420.526781-26783
M87L87del1delcTTc-N410.2526781-26783
M87L87del1delCtt-tt410.2526781-26783
M87L87del2delcTTc--33126781-26783
M87L87YnonsynCTTTAC22126781-26783
M87L87RnonsyncTtcGt11126781-26783

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
M87L87FCttTtt21142115All0.000404
M87L87FCtTTtC12115All0
M87L87FCttTtt12431243B.1.1.70.001113
M87L87LctTctC206278All0.000039
M87L87LctTctA67278All0.000013
M87L87LctTctG5278All0.000001
M87L87delCTT---201201All0.000038
M87L87FCttTtt193193AY.40.0003
M87L87ICttAtt158158All0.00003
M87L87FCttTtt134134B.1.1600.004179
M87L87delCTT---5959B.1.1.70.000053
M87L87delCTT---5858B.1.177.210.004435
M87L87FCttTtt5555AY.250.000331
M87L87FCttTtt4646B.1.2210.003268
M87L87LctTctA4445B.1.1.3430.916667
M87L87LctTctC145B.1.1.3430.020833
M87L87FCttTtt4141B.1.5260.000964
M87L87LctTctC3737B.1.1600.001154
M87L87LctTctC3434AY.30.000338
M87L87ICttAtt3434AY.40.000053
M87L87FCttTtt3030B.1.617.20.000113
M87L87FCttTtt2929B.10.000266
M87L87ICttAtt2323B.1.1.2750.258427
M87L87FCttTtt2122AY.30.000209
M87L87FCtTTtC122AY.30.00001
M87L87FCttTtt2222AY.440.000134
M87L87LctTctA1020B.1.1.70.000009
M87L87LctTctC820B.1.1.70.000007
M87L87LctTctG220B.1.1.70.000002
M87L87LctTctC1719AY.40.000026
M87L87LctTctG119AY.40.000002
M87L87LctTctA119AY.40.000002
M87L87FCttTtt1717A0.006579
M87L87FCttTtt1717AY.390.00042
M87L87ICttAtt1616AY.4.50.00172
M87L87FCttTtt1616AY.430.000071
M87L87delCTT---1616B.10.000147
M87L87ICttAtt1515B.1.1.70.000013
M87L87FCttTtt1414AY.60.000576
M87L87FCttTtt1414B.1.1770.000184
M87L87FCttTtt1313B.1.20.000114
M87L87ICttAtt1212B.1.10.000218
M87L87LctTctC1212B.1.1770.000158
M87L87LctTctC812B.1.20.00007
M87L87LctTctA412B.1.20.000035
M87L87LctTctC1111C.160.011665
M87L87VCttGtt1010All0.000002
M87L87FCttTtt1010AY.1020.000265
M87L87FCttTtt1010AY.7.10.001127
M87L87FCttTtt99AY.1030.000056
M87L87FCttTtt99AY.260.000255
M87L87FCttTtt99P.10.000142
M87L87FCttTtt77A.2.50.003493
M87L87LctTctC77AY.430.000031
M87L87ICttAtt77B.10.000064
M87L87LctTctC67B.1.617.20.000023
M87L87LctTctA17B.1.617.20.000004
M87L87FCttTtt66AY.1170.000507
M87L87LctTctC66AY.440.000037
M87L87FCttTtt66B.1.1.5190.000238
M87L87FCttTtt66B.1.177.210.000459
M87L87FCttTtt66B.1.214.20.003597
M87L87FCttTtt66B.1.4290.000141
M87L87ICttAtt66B.1.5610.002382
M87L87ICttAtt66B.1.617.20.000023
M87L87PcTtcCt45All0.000001
M87L87PcTTcCC15All0
M87L87LctTctC55AY.200.000194
M87L87FCttTtt55AY.50.000103
M87L87FCttTtt55B.1.6210.000443
M87L87FCttTtt55B.400.001821
M87L87delCTT---440.222222
M87L87SCTtTCt24All0
M87L87del1ctTct-24All0
M87L87SCTTTCG24All0
M87L87del1Ctt-tt14All0
M87L87del1cTTc-N14All0
M87L87LctTctC44AY.1030.000025
M87L87FCttTtt44AY.1200.000149
M87L87delCTT---44AY.430.000018
M87L87delCTT---44AY.75.10.000721
M87L87ICttAtt44AY.80.002424
M87L87ICttAtt44AY.90.00027
M87L87LctTctC44B.10.000037
M87L87ICttAtt44B.1.20.000035
M87L87FCttTtt44B.1.2580.000266
M87L87FCttTtt44B.1.5610.001588
M87L87FCttTtt44B.1.5960.000349
M87L87del2cTTc--33All0.000001
M87L87FCttTtt33AY.1000.000138
M87L87LctTctC33AY.1170.000254
M87L87FCttTtt33AY.1210.000406
M87L87delCTT---33AY.250.000018
M87L87FCttTtt33AY.3.10.000256
M87L87delCTT---33AY.40.000005
M87L87LctTctC33AY.460.000312
M87L87FCttTtt33AY.9.20.00011
M87L87delCTT---33AY.99.20.000276
M87L87FCttTtt33B.1.10.000054
M87L87FCttTtt33B.1.1.280.000934
M87L87delCTT---33B.1.1.3430.0625
M87L87ICttAtt33B.1.1.720.090909
M87L87delCTT---33B.1.20.000026
M87L87ICttAtt33B.1.2210.000213
M87L87LctTctC33B.1.2320.001612
M87L87FCttTtt33B.1.2360.00616
M87L87FCttTtt33B.1.2430.000209
M87L87LctTctC33B.1.4000.001287
M87L87VCttGtt33B.1.5260.000071
M87L87LctTctC33P.10.000047
M87L87YCTTTAC220.111111
M87L87SCTTTCG220.111111
M87L87LctTctA12A.2.50.000499
M87L87LctTctC12A.2.50.000499
M87L87ICttAtt22AD.20.000438
M87L87YCTTTAC22All0
M87L87LctTctC22AY.1190.000071
M87L87ICttAtt22AY.1200.000074
M87L87delCTT---22AY.130.000322
M87L87LctTctC22AY.270.000129
M87L87LctTctC12AY.330.000067
M87L87LctTctG12AY.330.000067
M87L87FCttTtt22AY.410.000588
M87L87delCTT---22AY.46.30.001867
M87L87FCttTtt22AY.540.000191
M87L87LctTctC12AY.60.000041
M87L87LctTctA12AY.60.000041
M87L87FCttTtt22AY.750.000112
M87L87FCttTtt22AY.90.000135
M87L87LctTctC22AY.98.10.000097
M87L87FCttTtt22AY.99.20.000184
M87L87FCttTtt22AZ.30.00304
M87L87FCttTtt22B0.000256
M87L87SCTtTCt22B.1.160.260.004843
M87L87delCTT---22B.1.1770.000026
M87L87LctTctC22B.1.177.600.000437
M87L87FCttTtt22B.1.177.860.000367
M87L87FCttTtt22B.1.3360.004878
M87L87FCttTtt22B.1.362.20.009434
M87L87FCttTtt22B.1.4270.000101
M87L87delCTT---22B.1.5960.000174
M87L87delCTT---22B.1.617.20.000008
M87L87LctTctC22B.1.6210.000177
M87L87FCttTtt22B.1.6370.000146
M87L87LctTctC22C.370.000232
M87L87delCTT---22D.20.00015
M87L87FCttTtt22P.1.140.000096
M87L87LctTctA22P.20.000373
M87L87FCttTtt22Q.30.00029
M87L87FCttTtt22Q.80.00033
M87L87LctTctC11A.10.000282
M87L87LctTctC11A.20.000662
M87L87LctTctA11A.23.10.000704
M87L87FCttTtt11AD.20.000219
M87L87RcTtcGt11All0
M87L87ICttAtt11AY.1000.000046
M87L87LctTctC11AY.1020.000027
M87L87delCTT---11AY.1030.000006
M87L87ICttAtt11AY.1030.000006
M87L87FCttTtt11AY.1060.000335
M87L87delCTT---11AY.1180.000063
M87L87FCttTtt11AY.1180.000063
M87L87VCttGtt11AY.1180.000063
M87L87FCttTtt11AY.1190.000035
M87L87delCTT---11AY.1200.000037
M87L87LctTctC11AY.1210.000135
M87L87ICttAtt11AY.170.008197
M87L87FCttTtt11AY.230.00007
M87L87LctTctC11AY.240.000431
M87L87LctTctC11AY.250.000006
M87L87FCttTtt11AY.270.000065
M87L87LctTctC11AY.290.000016
M87L87FCttTtt11AY.290.000016
M87L87VCttGtt11AY.30.00001
M87L87FCttTtt11AY.300.000396
M87L87FCttTtt11AY.330.000067
M87L87FCttTtt11AY.340.000097
M87L87delCTT---11AY.34.10.00051
M87L87ICttAtt11AY.350.000233
M87L87delCTT---11AY.390.000025
M87L87VCttGtt11AY.390.000025
M87L87FCttTtt11AY.39.10.00004
M87L87LctTctC11AY.39.10.00004
M87L87LctTctC11AY.4.20.000022
M87L87FCttTtt11AY.4.20.000022
M87L87FCttTtt11AY.4.50.000107
M87L87FCttTtt11AY.420.00004
M87L87ICttAtt11AY.430.000004
M87L87FCttTtt11AY.450.000122
M87L87delCTT---11AY.460.000104
M87L87del1ctTct-11AY.460.000104
M87L87del2cTTc--11AY.46.30.000934
M87L87FCttTtt11AY.46.60.000072
M87L87delCTT---11AY.470.000031
M87L87FCttTtt11AY.470.000031
M87L87ICttAtt11AY.50.000021
M87L87ICttAtt11AY.580.000907
M87L87delCTT---11AY.600.000938
M87L87LctTctC11AY.690.000187
M87L87FCttTtt11AY.690.000187
M87L87delCTT---11AY.700.000209
M87L87ICttAtt11AY.750.000056
M87L87FCttTtt11AY.75.10.00018
M87L87FCttTtt11AY.870.000833
M87L87ICttAtt11AY.870.000833
M87L87FCttTtt11AY.880.000884
M87L87delCTT---11AY.980.000079
M87L87ICttAtt11AY.980.000079
M87L87VCttGtt11AY.98.10.000048
M87L87ICttAtt11AZ.20.000821
M87L87del2cTTc--11B.10.000009
M87L87VCttGtt11B.10.000009
M87L87del1cTTc-N11B.10.000009
M87L87RcTtcGt11B.1.10.000018
M87L87delCTT---11B.1.10.000018
M87L87ICttAtt11B.1.1.10.000327
M87L87FCttTtt11B.1.1.1070.032258
M87L87delCTT---11B.1.1.2210.010101
M87L87LctTctG11B.1.1.2290.005747
M87L87FCttTtt11B.1.1.2840.000107
M87L87delCTT---11B.1.1.2880.001916
M87L87delCTT---11B.1.1.3720.000689
M87L87LctTctA11B.1.1.390.00051
M87L87FCttTtt11B.1.1.500.000679
M87L87PcTtcCt11B.1.1.70.000001
M87L87del1Ctt-tt11B.1.1.70.000001
M87L87LctTctC11B.1.1.700.000341
M87L87delCTT---11B.1.1.700.000341
M87L87delCTT---11B.1.1600.000031
M87L87del2cTTc--11B.1.160.160.000929
M87L87FCttTtt11B.1.160.290.004219
M87L87delCTT---11B.1.1610.017241
M87L87del1ctTct-11B.1.1770.000013
M87L87PcTtcCt11B.1.1770.000013
M87L87delCTT---11B.1.177.730.000566
M87L87FCttTtt11B.1.177.810.000189
M87L87FCttTtt11B.1.2340.000132
M87L87ICttAtt11B.1.2390.001221
M87L87delCTT---11B.1.2580.000067
M87L87ICttAtt11B.1.2580.000067
M87L87delCTT---11B.1.258.110.000396
M87L87FCttTtt11B.1.258.140.00098
M87L87delCTT---11B.1.2650.001271
M87L87VCttGtt11B.1.2980.002114
M87L87delCTT---11B.1.3510.00003
M87L87FCttTtt11B.1.351.20.000303
M87L87LctTctC11B.1.3750.00082
M87L87delCTT---11B.1.4000.000429
M87L87FCttTtt11B.1.4040.001302
M87L87LctTctA11B.1.4270.00005
M87L87PcTTcCC11B.1.4290.000024
M87L87ICttAtt11B.1.438.10.000107
M87L87delCTT---11B.1.4590.004082
M87L87FCttTtt11B.1.4590.004082
M87L87FCttTtt11B.1.466.20.000391
M87L87FCttTtt11B.1.5380.008065
M87L87delCTT---11B.1.5610.000397
M87L87FCttTtt11B.1.5640.000426
M87L87delCTT---11B.1.5770.000687
M87L87delCTT---11B.1.5950.000261
M87L87FCttTtt11B.1.5950.000261
M87L87LctTctC11B.1.5960.000087
M87L87ICttAtt11B.1.5990.00365
M87L87FCttTtt11B.1.6090.000479
M87L87PcTtcCt11B.1.617.20.000004
M87L87delCTT---11B.1.6270.00202
M87L87FCttTtt11B.1.6280.000352
M87L87VCttGtt11B.1.6370.000073
M87L87ICttAtt11B.1.6370.000073
M87L87LctTctC11B.400.000364
M87L87FCttTtt11C.220.071429
M87L87FCttTtt11D.20.000075
M87L87LctTctC11D.20.000075
M87L87PcTtcCt11D.20.000075
M87L87LctTctC11P.1.120.000484
M87L87delCTT---11P.1.150.000232
M87L87FCttTtt11R.10.00009