CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = M : CodonNum = 83

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
M83A83SnonsynGcaTca767767126769-26771
M83A83TnonsynGcaAca4704680.99574526769-26771
M83A83TnonsynGcAAcT47020.0042553226769-26771
M83A83AsyngcAgcT4343280.7557626769-26771
M83A83AsyngcAgcG434930.21428626769-26771
M83A83AsyngcAgcC434130.029953926769-26771
M83A83VnonsyngCagTa9696126769-26771
M83A83deldelGCA---8888126769-26771
M83A83EnonsyngCagAa55126769-26771
M83A83PnonsynGcaCca530.626769-26771
M83A83PnonsynGcACcC510.226769-26771
M83A83PnonsynGcACcT510.226769-26771
M83A83LnonsynGCaTTa22126769-26771
M83A83FnonsynGCATTT22126769-26771
M83A83XnonsynGCaTAa11126769-26771
M83A83InonsynGCaATa11126769-26771
M83A83GnonsyngCagGa11126769-26771
M83A83del1delGca-ca11126769-26771

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
M83A83SGcaTca767767All0.000147
M83A83TGcaAca468470All0.00009
M83A83TGcAAcT2470All0
M83A83AgcAgcT328434All0.000063
M83A83AgcAgcG93434All0.000018
M83A83AgcAgcC13434All0.000002
M83A83SGcaTca233233B.1.1.70.000209
M83A83SGcaTca151151B.1.6060.909639
M83A83SGcaTca148148AY.40.00023
M83A83TGcaAca100100B.1.1.70.00009
M83A83VgCagTa9696All0.000018
M83A83delGCA---8888All0.000017
M83A83TGcaAca8787AY.430.000385
M83A83AgcAgcT6585B.1.1.70.000058
M83A83AgcAgcG1685B.1.1.70.000014
M83A83AgcAgcC485B.1.1.70.000004
M83A83delGCA---5757B.1.177.210.004359
M83A83AgcAgcT4547AY.90.003042
M83A83AgcAgcG247AY.90.000135
M83A83TGcaAca4141AY.40.000064
M83A83SGcaTca3838B.10.000348
M83A83AgcAgcT3131B.1.438.10.003325
M83A83SGcaTca2929AY.1030.00018
M83A83AgcAgcT2128B.1.20.000185
M83A83AgcAgcG728B.1.20.000062
M83A83AgcAgcG2727B.1.6370.001973
M83A83AgcAgcT2626AY.430.000115
M83A83SGcaTca2626B.1.20.000229
M83A83TGcaAca2222AY.39.10.000871
M83A83SGcaTca2121AY.50.000434
M83A83AgcAgcT1820B.1.617.20.000068
M83A83AgcAgcG220B.1.617.20.000008
M83A83VgCagTa1818B.1.1.70.000016
M83A83TGcaAca1818B.1.617.20.000068
M83A83AgcAgcT1517AY.40.000023
M83A83AgcAgcG217AY.40.000003
M83A83AgcAgcT1417B.1.1600.000437
M83A83AgcAgcG317B.1.1600.000094
M83A83AgcAgcT1515AY.1020.000398
M83A83SGcaTca1515B.1.617.20.000056
M83A83TGcaAca1414AY.230.000976
M83A83TGcaAca1313B.1.20.000114
M83A83delGCA---1212B.1.1.70.000011
M83A83TGcaAca1111B.1.221.20.044177
M83A83TGcaAca1010AY.1030.000062
M83A83VgCagTa1010AY.440.000061
M83A83AgcAgcT810AY.440.000049
M83A83AgcAgcG210AY.440.000012
M83A83SGcaTca1010P.10.000158
M83A83TGcaAca1010P.1.150.002323
M83A83TGcaAca99AY.440.000055
M83A83AgcAgcT79AY.470.000218
M83A83AgcAgcC29AY.470.000062
M83A83SGcaTca99B.1.351.20.002723
M83A83TGcaAca99B.1.5260.000212
M83A83TGcaAca88B.1.6210.000708
M83A83AgcAgcT57AY.1030.000031
M83A83AgcAgcG27AY.1030.000012
M83A83TGcaAca77B.1.10.000127
M83A83TGcaAca66AY.250.000036
M83A83AgcAgcG66AY.30.00006
M83A83TGcaAca66AY.750.000336
M83A83TGcaAca66B.10.000055
M83A83AgcAgcC56B.1.1770.000066
M83A83AgcAgcT16B.1.1770.000013
M83A83VgCagTa66B.1.20.000053
M83A83VgCagTa66B.1.4270.000303
M83A83EgCagAa55All0.000001
M83A83PGcaCca35All0.000001
M83A83PGcACcC15All0
M83A83PGcACcT15All0
M83A83VgCagTa55AY.40.000008
M83A83SGcaTca55AY.430.000022
M83A83TGcaAca55AY.7.10.000564
M83A83SGcaTca55B.1.10.000091
M83A83TGcaAca55B.1.1.5190.000199
M83A83TGcaAca55B.1.1770.000066
M83A83TGcaAca55B.1.2210.000355
M83A83VgCagTa55B.1.3510.000149
M83A83VgCagTa55B.1.4290.000118
M83A83delGCA---440.222222
M83A83SGcaTca44AY.200.000155
M83A83AgcAgcG44AY.260.000113
M83A83AgcAgcT44AY.29.10.000882
M83A83SGcaTca44AY.390.000099
M83A83AgcAgcT44AY.390.000099
M83A83VgCagTa44AY.430.000018
M83A83VgCagTa44B.10.000037
M83A83SGcaTca44B.1.1.3150.033898
M83A83TGcaAca44B.1.1600.000125
M83A83SGcaTca44B.1.1770.000053
M83A83VgCagTa44B.1.258.30.0067
M83A83AgcAgcT24B.1.4290.000047
M83A83AgcAgcC14B.1.4290.000024
M83A83AgcAgcG14B.1.4290.000024
M83A83VgCagTa44B.1.617.20.000015
M83A83PGcACcC130.055556
M83A83PGcACcT130.055556
M83A83PGcaCca130.055556
M83A83TGcaAca33AY.1000.000138
M83A83TGcaAca33AY.1020.00008
M83A83SGcaTca33AY.250.000018
M83A83AgcAgcG23AY.250.000012
M83A83AgcAgcT13AY.250.000006
M83A83TGcaAca33AY.470.000093
M83A83AgcAgcT33AY.50.000062
M83A83VgCagTa33AY.750.000168
M83A83VgCagTa33B.1.10.000054
M83A83VgCagTa33B.1.2210.000213
M83A83AgcAgcT33B.1.2210.000213
M83A83SGcaTca33B.1.3510.000089
M83A83AgcAgcT23B.1.360.000292
M83A83AgcAgcG13B.1.360.000146
M83A83TGcaAca33B.1.5090.002597
M83A83SGcaTca33B.1.6230.001609
M83A83AgcAgcG33B.1.6280.001057
M83A83TGcaAca33C.110.031915
M83A83AgcAgcT23P.10.000032
M83A83AgcAgcG13P.10.000016
M83A83SGcaTca33P.1.10.000953
M83A83SGcaTca33P.1.140.000143
M83A83TGcAAcT220.111111
M83A83FGCATTT220.111111
M83A83AgcAgcC120.055556
M83A83AgcAgcT120.055556
M83A83FGCATTT22All0
M83A83LGCaTTa22All0
M83A83AgcAgcT12AY.1190.000035
M83A83AgcAgcG12AY.1190.000035
M83A83AgcAgcT22AY.200.000078
M83A83TGcaAca22AY.200.000078
M83A83TGcaAca22AY.30.00002
M83A83SGcaTca22AY.39.10.000079
M83A83SGcaTca22AY.440.000012
M83A83TGcaAca22AY.50.000041
M83A83AgcAgcT22AY.590.001059
M83A83VgCagTa22AY.610.00021
M83A83SGcaTca22AY.750.000112
M83A83delGCA---22AY.75.10.000361
M83A83AgcAgcG12B.10.000009
M83A83AgcAgcT12B.10.000009
M83A83AgcAgcT22B.1.1.2140.000111
M83A83TGcaAca22B.1.1.4200.002012
M83A83AgcAgcT22B.1.1.5190.000079
M83A83AgcAgcG22B.1.177.570.000562
M83A83SGcaTca22B.1.2210.000142
M83A83VgCagTa22B.1.221.10.005814
M83A83TGcaAca22B.1.4270.000101
M83A83SGcaTca22B.1.4290.000047
M83A83TGcaAca22B.1.438.10.000215
M83A83AgcAgcT22B.1.5250.000226
M83A83SGcaTca22B.1.5890.015152
M83A83SGcaTca22B.1.5960.000174
M83A83TGcaAca22B.6.60.001778
M83A83SGcaTca22L.30.007092
M83A83TGcaAca22P.10.000032
M83A83AgcAgcG22P.1.140.000096
M83A83SGcaTca22Q.20.001227
M83A83SGcaTca22R.10.00018
M83A83AgcAgcG22R.10.00018
M83A83SGcaTca11A.20.000662
M83A83del1Gca-ca11All0
M83A83IGCaATa11All0
M83A83XGCaTAa11All0
M83A83GgCagGa11All0
M83A83AgcAgcT11AY.1010.00049
M83A83SGcaTca11AY.1020.000027
M83A83TGcaAca11AY.1050.000643
M83A83AgcAgcT11AY.1050.000643
M83A83TGcaAca11AY.1130.000142
M83A83delGCA---11AY.1170.000085
M83A83SGcaTca11AY.1180.000063
M83A83SGcaTca11AY.1190.000035
M83A83AgcAgcT11AY.1200.000037
M83A83delGCA---11AY.1200.000037
M83A83TGcaAca11AY.1210.000135
M83A83TGcaAca11AY.160.00038
M83A83IGCaATa11AY.200.000039
M83A83SGcaTca11AY.230.00007
M83A83SGcaTca11AY.240.000431
M83A83VgCagTa11AY.250.000006
M83A83TGcaAca11AY.260.000028
M83A83SGcaTca11AY.290.000016
M83A83VgCagTa11AY.29.10.000221
M83A83VgCagTa11AY.30.00001
M83A83SGcaTca11AY.30.00001
M83A83SGcaTca11AY.300.000396
M83A83AgcAgcT11AY.39.10.00004
M83A83LGCaTTa11AY.40.000002
M83A83VgCagTa11AY.4.20.000022
M83A83AgcAgcT11AY.4.20.000022
M83A83SGcaTca11AY.4.20.000022
M83A83TGcaAca11AY.4.20.000022
M83A83SGcaTca11AY.4.2.10.000149
M83A83TGcaAca11AY.420.00004
M83A83TGcaAca11AY.450.000122
M83A83AgcAgcT11AY.450.000122
M83A83SGcaTca11AY.450.000122
M83A83AgcAgcT11AY.460.000104
M83A83TGcaAca11AY.510.000909
M83A83AgcAgcT11AY.550.000917
M83A83SGcaTca11AY.60.000041
M83A83AgcAgcT11AY.750.000056
M83A83AgcAgcT11AY.880.000884
M83A83TGcaAca11AY.890.004902
M83A83TGcaAca11AY.90.000068
M83A83SGcaTca11AY.9.10.000084
M83A83AgcAgcT11AY.9.20.000037
M83A83TGcaAca11AY.920.000287
M83A83AgcAgcT11AY.920.000287
M83A83VgCagTa11AY.980.000079
M83A83TGcaAca11AY.980.000079
M83A83TGcaAca11AY.98.10.000048
M83A83VgCagTa11AY.99.20.000092
M83A83AgcAgcT11B0.000128
M83A83EgCagAa11B0.000128
M83A83EgCagAa11B.10.000009
M83A83delGCA---11B.10.000009
M83A83XGCaTAa11B.10.000009
M83A83delGCA---11B.1.10.000018
M83A83AgcAgcT11B.1.1.10.000327
M83A83VgCagTa11B.1.1.10.000327
M83A83TGcaAca11B.1.1.1760.000439
M83A83TGcaAca11B.1.1.2140.000055
M83A83AgcAgcG11B.1.1.2220.000204
M83A83TGcaAca11B.1.1.2360.006897
M83A83TGcaAca11B.1.1.280.000311
M83A83VgCagTa11B.1.1.280.000311
M83A83TGcaAca11B.1.1.3060.000438
M83A83TGcaAca11B.1.1.3170.000412
M83A83GgCagGa11B.1.1.3290.003846
M83A83AgcAgcT11B.1.1.3480.000796
M83A83SGcaTca11B.1.1.3620.005618
M83A83delGCA---11B.1.1.3720.000689
M83A83TGcaAca11B.1.1.3720.000689
M83A83TGcaAca11B.1.1.3890.006061
M83A83SGcaTca11B.1.1.3980.003226
M83A83AgcAgcT11B.1.1.4340.000349
M83A83TGcaAca11B.1.1.4640.001473
M83A83VgCagTa11B.1.1.5190.00004
M83A83LGCaTTa11B.1.1.70.000001
M83A83PGcaCca11B.1.1.70.000001
M83A83delGCA---11B.1.1600.000031
M83A83delGCA---11B.1.1610.017241
M83A83SGcaTca11B.1.177.120.000152
M83A83AgcAgcT11B.1.177.170.000821
M83A83AgcAgcT11B.1.177.210.000076
M83A83AgcAgcT11B.1.177.230.003236
M83A83SGcaTca11B.1.177.440.000519
M83A83VgCagTa11B.1.177.520.001757
M83A83VgCagTa11B.1.177.540.000606
M83A83AgcAgcG11B.1.177.730.000566
M83A83SGcaTca11B.1.2430.00007
M83A83TGcaAca11B.1.2430.00007
M83A83TGcaAca11B.1.2580.000067
M83A83delGCA---11B.1.258.110.000396
M83A83SGcaTca11B.1.258.170.000104
M83A83TGcaAca11B.1.258.40.003448
M83A83TGcaAca11B.1.3320.003497
M83A83TGcaAca11B.1.3510.00003
M83A83AgcAgcT11B.1.351.30.000876
M83A83PGcaCca11B.1.36.10.00114
M83A83AgcAgcG11B.1.36.80.001
M83A83SGcaTca11B.1.4270.00005
M83A83TGcaAca11B.1.4290.000024
M83A83VgCagTa11B.1.4850.014925
M83A83AgcAgcG11B.1.5240.001406
M83A83TGcaAca11B.1.5250.000113
M83A83AgcAgcT11B.1.5260.000024
M83A83TGcaAca11B.1.5610.000397
M83A83SGcaTca11B.1.5640.000426
M83A83TGcaAca11B.1.5650.00081
M83A83delGCA---11B.1.5770.000687
M83A83AgcAgcT11B.1.5820.000491
M83A83SGcaTca11B.1.5950.000261
M83A83delGCA---11B.1.5960.000087
M83A83EgCagAa11B.1.5960.000087
M83A83TGcaAca11B.1.6060.006024
M83A83del1Gca-ca11B.1.6060.006024
M83A83EgCagAa11B.1.617.10.000129
M83A83delGCA---11B.1.617.20.000004
M83A83TGcaAca11B.1.617.30.002985
M83A83delGCA---11B.1.6270.00202
M83A83EgCagAa11B.1.780.008547
M83A83TGcaAca11B.440.1
M83A83AgcAgcT11C.350.000774
M83A83TGcaAca11C.370.000116
M83A83delGCA---11P.1.150.000232
M83A83SGcaTca11P.1.170.000162
M83A83SGcaTca11Q.70.001111
M83A83SGcaTca11Q.80.000165