CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
M | 82 | I82T | nonsyn | aTc | aCc | 2770324 | 2769241 | 0.999609 | 26766-26768 | |
M | 82 | I82T | nonsyn | aTC | aCT | 2770324 | 992 | 0.000358081 | 26766-26768 | |
M | 82 | I82T | nonsyn | aTC | aCA | 2770324 | 89 | 0.0000321262 | 26766-26768 | |
M | 82 | I82T | nonsyn | aTC | aCG | 2770324 | 2 | 0.000000721937 | 26766-26768 | |
M | 82 | I82S | nonsyn | aTc | aGc | 5017 | 5014 | 0.999402 | 26766-26768 | |
M | 82 | I82S | nonsyn | aTC | aGT | 5017 | 2 | 0.000398645 | 26766-26768 | |
M | 82 | I82S | nonsyn | ATc | TCc | 5017 | 1 | 0.000199322 | 26766-26768 | |
M | 82 | I82P | nonsyn | ATc | CCc | 3289 | 3289 | 1 | 26766-26768 | |
M | 82 | I82I | syn | atC | atT | 1657 | 1494 | 0.901629 | 26766-26768 | |
M | 82 | I82I | syn | atC | atA | 1657 | 163 | 0.0983706 | 26766-26768 | |
M | 82 | I82V | nonsyn | Atc | Gtc | 365 | 363 | 0.994521 | 26766-26768 | |
M | 82 | I82V | nonsyn | AtC | GtT | 365 | 2 | 0.00547945 | 26766-26768 | |
M | 82 | I82A | nonsyn | ATc | GCc | 223 | 223 | 1 | 26766-26768 | |
M | 82 | I82del | del | ATC | --- | 86 | 86 | 1 | 26766-26768 | |
M | 82 | I82L | nonsyn | Atc | Ctc | 29 | 29 | 1 | 26766-26768 | |
M | 82 | I82del1 | del | aTc | a-c | 12 | 10 | 0.833333 | 26766-26768 | |
M | 82 | I82del1 | del | Atc | -tc | 12 | 2 | 0.166667 | 26766-26768 | |
M | 82 | I82N | nonsyn | aTc | aAc | 11 | 11 | 1 | 26766-26768 | |
M | 82 | I82F | nonsyn | Atc | Ttc | 4 | 4 | 1 | 26766-26768 | |
M | 82 | I82M | nonsyn | atC | atG | 3 | 3 | 1 | 26766-26768 | |
M | 82 | I82del2 | del | aTC | a-- | 3 | 2 | 0.666667 | 26766-26768 | |
M | 82 | I82del2 | del | ATC | G-- | 3 | 1 | 0.333333 | 26766-26768 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
M | 82 | I82T | aTc | aCc | 2769241 | 2770324 | All | 0.52965 |
M | 82 | I82T | aTC | aCT | 992 | 2770324 | All | 0.00019 |
M | 82 | I82T | aTC | aCA | 89 | 2770324 | All | 0.000017 |
M | 82 | I82T | aTC | aCG | 2 | 2770324 | All | 0 |
M | 82 | I82T | aTc | aCc | 641317 | 641606 | AY.4 | 0.99816 |
M | 82 | I82T | aTC | aCT | 276 | 641606 | AY.4 | 0.00043 |
M | 82 | I82T | aTC | aCA | 13 | 641606 | AY.4 | 0.00002 |
M | 82 | I82T | aTc | aCc | 264950 | 265011 | B.1.617.2 | 0.997647 |
M | 82 | I82T | aTC | aCT | 57 | 265011 | B.1.617.2 | 0.000215 |
M | 82 | I82T | aTC | aCA | 3 | 265011 | B.1.617.2 | 0.000011 |
M | 82 | I82T | aTC | aCG | 1 | 265011 | B.1.617.2 | 0.000004 |
M | 82 | I82T | aTc | aCc | 224836 | 224914 | AY.43 | 0.996128 |
M | 82 | I82T | aTC | aCA | 41 | 224914 | AY.43 | 0.000182 |
M | 82 | I82T | aTC | aCT | 37 | 224914 | AY.43 | 0.000164 |
M | 82 | I82T | aTc | aCc | 165407 | 165432 | AY.25 | 0.994893 |
M | 82 | I82T | aTC | aCT | 21 | 165432 | AY.25 | 0.000126 |
M | 82 | I82T | aTC | aCA | 4 | 165432 | AY.25 | 0.000024 |
M | 82 | I82T | aTc | aCc | 163126 | 163154 | AY.44 | 0.992909 |
M | 82 | I82T | aTC | aCT | 24 | 163154 | AY.44 | 0.000146 |
M | 82 | I82T | aTC | aCA | 4 | 163154 | AY.44 | 0.000024 |
M | 82 | I82T | aTc | aCc | 159937 | 159964 | AY.103 | 0.993058 |
M | 82 | I82T | aTC | aCT | 26 | 159964 | AY.103 | 0.000161 |
M | 82 | I82T | aTC | aCA | 1 | 159964 | AY.103 | 0.000006 |
M | 82 | I82T | aTc | aCc | 100477 | 100497 | AY.3 | 0.999383 |
M | 82 | I82T | aTC | aCA | 10 | 100497 | AY.3 | 0.000099 |
M | 82 | I82T | aTC | aCT | 10 | 100497 | AY.3 | 0.000099 |
M | 82 | I82T | aTc | aCc | 63381 | 63388 | AY.29 | 0.999748 |
M | 82 | I82T | aTC | aCT | 7 | 63388 | AY.29 | 0.00011 |
M | 82 | I82T | aTc | aCc | 48383 | 48384 | AY.5 | 0.999071 |
M | 82 | I82T | aTC | aCT | 1 | 48384 | AY.5 | 0.000021 |
M | 82 | I82T | aTc | aCc | 45977 | 45980 | AY.4.2 | 0.99718 |
M | 82 | I82T | aTC | aCT | 3 | 45980 | AY.4.2 | 0.000065 |
M | 82 | I82T | aTc | aCc | 40314 | 40317 | AY.39 | 0.996219 |
M | 82 | I82T | aTC | aCT | 3 | 40317 | AY.39 | 0.000074 |
M | 82 | I82T | aTc | aCc | 37709 | 37714 | AY.102 | 0.999814 |
M | 82 | I82T | aTC | aCT | 5 | 37714 | AY.102 | 0.000133 |
M | 82 | I82T | aTc | aCc | 35111 | 35121 | AY.26 | 0.993998 |
M | 82 | I82T | aTC | aCT | 10 | 35121 | AY.26 | 0.000283 |
M | 82 | I82T | aTc | aCc | 32002 | 32012 | AY.47 | 0.995428 |
M | 82 | I82T | aTC | aCA | 9 | 32012 | AY.47 | 0.00028 |
M | 82 | I82T | aTC | aCT | 1 | 32012 | AY.47 | 0.000031 |
M | 82 | I82T | aTc | aCc | 28173 | 28174 | AY.119 | 0.994739 |
M | 82 | I82T | aTC | aCT | 1 | 28174 | AY.119 | 0.000035 |
M | 82 | I82T | aTc | aCc | 26870 | 27121 | AY.9.2 | 0.986924 |
M | 82 | I82T | aTC | aCT | 251 | 27121 | AY.9.2 | 0.009219 |
M | 82 | I82T | aTc | aCc | 26859 | 26859 | AY.120 | 0.998587 |
M | 82 | I82T | aTc | aCc | 25569 | 25579 | AY.20 | 0.993743 |
M | 82 | I82T | aTC | aCT | 10 | 25579 | AY.20 | 0.000389 |
M | 82 | I82T | aTc | aCc | 25205 | 25205 | AY.39.1 | 0.998455 |
M | 82 | I82T | aTc | aCc | 24794 | 24794 | AY.42 | 0.997466 |
M | 82 | I82T | aTc | aCc | 24300 | 24301 | AY.6 | 0.999424 |
M | 82 | I82T | aTC | aCT | 1 | 24301 | AY.6 | 0.000041 |
M | 82 | I82T | aTc | aCc | 21680 | 21724 | AY.100 | 0.997424 |
M | 82 | I82T | aTC | aCT | 44 | 21724 | AY.100 | 0.002024 |
M | 82 | I82T | aTc | aCc | 20522 | 20535 | AY.98.1 | 0.993898 |
M | 82 | I82T | aTC | aCT | 13 | 20535 | AY.98.1 | 0.00063 |
M | 82 | I82T | aTc | aCc | 17519 | 17566 | AY.75 | 0.981457 |
M | 82 | I82T | aTC | aCT | 47 | 17566 | AY.75 | 0.002633 |
M | 82 | I82T | aTc | aCc | 15828 | 15834 | AY.118 | 0.991605 |
M | 82 | I82T | aTC | aCT | 6 | 15834 | AY.118 | 0.000376 |
M | 82 | I82T | aTc | aCc | 15422 | 15452 | AY.27 | 0.998123 |
M | 82 | I82T | aTC | aCT | 30 | 15452 | AY.27 | 0.001942 |
M | 82 | I82T | aTc | aCc | 14938 | 14938 | AY.33 | 0.997529 |
M | 82 | I82T | aTc | aCc | 14772 | 14778 | AY.9 | 0.998513 |
M | 82 | I82T | aTC | aCT | 6 | 14778 | AY.9 | 0.000406 |
M | 82 | I82T | aTc | aCc | 14134 | 14138 | AY.23 | 0.985841 |
M | 82 | I82T | aTC | aCT | 4 | 14138 | AY.23 | 0.000279 |
M | 82 | I82T | aTc | aCc | 13785 | 13785 | AY.46.6 | 0.995379 |
M | 82 | I82T | aTc | aCc | 12643 | 12647 | AY.98 | 0.998736 |
M | 82 | I82T | aTC | aCT | 4 | 12647 | AY.98 | 0.000316 |
M | 82 | I82T | aTc | aCc | 11914 | 11915 | AY.9.1 | 0.997488 |
M | 82 | I82T | aTC | aCT | 1 | 11915 | AY.9.1 | 0.000084 |
M | 82 | I82T | aTc | aCc | 11725 | 11725 | AY.3.1 | 0.999659 |
M | 82 | I82T | aTc | aCc | 11357 | 11361 | AY.14 | 0.99956 |
M | 82 | I82T | aTC | aCT | 4 | 11361 | AY.14 | 0.000352 |
M | 82 | I82T | aTc | aCc | 10799 | 10801 | AY.99.2 | 0.995208 |
M | 82 | I82T | aTC | aCA | 2 | 10801 | AY.99.2 | 0.000184 |
M | 82 | I82T | aTc | aCc | 10337 | 10337 | AY.54 | 0.985603 |
M | 82 | I82T | aTc | aCc | 9982 | 10010 | AY.34 | 0.967905 |
M | 82 | I82T | aTC | aCT | 28 | 10010 | AY.34 | 0.002715 |
M | 82 | I82T | aTc | aCc | 9710 | 9710 | AY.117 | 0.820656 |
M | 82 | I82T | aTc | aCc | 9466 | 9468 | AY.46 | 0.985221 |
M | 82 | I82T | aTC | aCT | 2 | 9468 | AY.46 | 0.000208 |
M | 82 | I82T | aTc | aCc | 9430 | 9435 | AY.61 | 0.988055 |
M | 82 | I82T | aTC | aCT | 5 | 9435 | AY.61 | 0.000524 |
M | 82 | I82T | aTc | aCc | 9259 | 9259 | AY.4.5 | 0.99527 |
M | 82 | I82T | aTc | aCc | 8873 | 8873 | AY.7.1 | 1 |
M | 82 | I82T | aTc | aCc | 8861 | 8861 | AY.110 | 0.998535 |
M | 82 | I82T | aTc | aCc | 8786 | 8787 | B.1.525 | 0.994229 |
M | 82 | I82T | aTC | aCT | 1 | 8787 | B.1.525 | 0.000113 |
M | 82 | I82T | aTc | aCc | 8645 | 8649 | AY.74 | 0.999769 |
M | 82 | I82T | aTC | aCT | 4 | 8649 | AY.74 | 0.000463 |
M | 82 | I82T | aTc | aCc | 8163 | 8164 | AY.45 | 0.993307 |
M | 82 | I82T | aTC | aCT | 1 | 8164 | AY.45 | 0.000122 |
M | 82 | I82T | aTc | aCc | 7387 | 7389 | AY.121 | 0.999594 |
M | 82 | I82T | aTC | aCT | 2 | 7389 | AY.121 | 0.000271 |
M | 82 | I82T | aTc | aCc | 7008 | 7012 | AY.113 | 0.997864 |
M | 82 | I82T | aTC | aCT | 4 | 7012 | AY.113 | 0.00057 |
M | 82 | I82T | aTc | aCc | 6712 | 6715 | AY.36 | 0.994813 |
M | 82 | I82T | aTC | aCT | 3 | 6715 | AY.36 | 0.000445 |
M | 82 | I82T | aTc | aCc | 6689 | 6689 | AY.4.2.1 | 0.996573 |
M | 82 | I82T | aTc | aCc | 6202 | 6202 | AY.13 | 0.99839 |
M | 82 | I82T | aTc | aCc | 6078 | 6078 | AY.46.4 | 0.999835 |
M | 82 | I82T | aTc | aCc | 5486 | 5491 | AY.75.1 | 0.989181 |
M | 82 | I82T | aTC | aCT | 5 | 5491 | AY.75.1 | 0.000902 |
M | 82 | I82T | aTc | aCc | 5441 | 5441 | AY.111 | 0.99652 |
M | 82 | I82T | aTc | aCc | 5351 | 5355 | AY.69 | 0.99888 |
M | 82 | I82T | aTC | aCT | 4 | 5355 | AY.69 | 0.000747 |
M | 82 | I82T | aTc | aCc | 5098 | 5101 | AY.7 | 0.999216 |
M | 82 | I82T | aTC | aCT | 3 | 5101 | AY.7 | 0.000588 |
M | 82 | I82T | aTc | aCc | 5031 | 5031 | AY.46.5 | 0.998214 |
M | 82 | I82S | aTc | aGc | 5014 | 5017 | All | 0.000959 |
M | 82 | I82S | aTC | aGT | 2 | 5017 | All | 0 |
M | 82 | I82S | ATc | TCc | 1 | 5017 | All | 0 |
M | 82 | I82T | aTc | aCc | 4780 | 4781 | AY.70 | 0.996664 |
M | 82 | I82T | aTC | aCT | 1 | 4781 | AY.70 | 0.000209 |
M | 82 | I82T | aTc | aCc | 4535 | 4535 | AY.29.1 | 1 |
M | 82 | I82S | aTc | aGc | 4358 | 4360 | B.1.617.1 | 0.562032 |
M | 82 | I82S | aTC | aGT | 2 | 4360 | B.1.617.1 | 0.000258 |
M | 82 | I82T | aTc | aCc | 4325 | 4325 | AY.114 | 0.999538 |
M | 82 | I82T | aTc | aCc | 4222 | 4222 | AY.35 | 0.98392 |
M | 82 | I82T | aTc | aCc | 3662 | 3662 | AY.93 | 1 |
M | 82 | I82T | aTc | aCc | 3627 | 3627 | AY.68 | 0.992883 |
M | 82 | I82T | aTc | aCc | 3490 | 3490 | AY.5.4 | 0.965689 |
M | 82 | I82T | aTc | aCc | 3480 | 3481 | AY.116 | 0.997993 |
M | 82 | I82T | aTC | aCT | 1 | 3481 | AY.116 | 0.000287 |
M | 82 | I82T | aTc | aCc | 3464 | 3471 | AY.53 | 0.995975 |
M | 82 | I82T | aTC | aCT | 7 | 3471 | AY.53 | 0.002013 |
M | 82 | I82T | aTc | aCc | 3397 | 3397 | AY.41 | 0.99853 |
M | 82 | I82P | ATc | CCc | 3289 | 3289 | All | 0.000629 |
M | 82 | I82T | aTc | aCc | 3283 | 3284 | B.1.1.318 | 0.990646 |
M | 82 | I82T | aTC | aCG | 1 | 3284 | B.1.1.318 | 0.000302 |
M | 82 | I82T | aTc | aCc | 3275 | 3276 | B.1.575 | 0.993629 |
M | 82 | I82T | aTC | aCT | 1 | 3276 | B.1.575 | 0.000303 |
M | 82 | I82T | aTc | aCc | 3229 | 3229 | AY.92 | 0.927607 |
M | 82 | I82T | aTc | aCc | 3211 | 3211 | AY.116.1 | 1 |
M | 82 | I82T | aTc | aCc | 3157 | 3157 | AY.37 | 0.997788 |
M | 82 | I82T | aTc | aCc | 3152 | 3152 | AY.12 | 0.996207 |
M | 82 | I82T | aTc | aCc | 3102 | 3103 | AY.120.1 | 0.995827 |
M | 82 | I82T | aTC | aCT | 1 | 3103 | AY.120.1 | 0.000321 |
M | 82 | I82T | aTc | aCc | 2953 | 2954 | AY.5.3 | 0.996289 |
M | 82 | I82T | aTC | aCT | 1 | 2954 | AY.5.3 | 0.000337 |
M | 82 | I82T | aTc | aCc | 2874 | 2874 | AY.106 | 0.962492 |
M | 82 | I82T | aTc | aCc | 2808 | 2808 | AY.2 | 1 |
M | 82 | I82T | aTc | aCc | 2632 | 2632 | AY.16 | 0.999241 |
M | 82 | I82T | aTc | aCc | 2584 | 2584 | AY.63 | 0.999613 |
M | 82 | I82T | aTc | aCc | 2527 | 2527 | AY.1 | 1 |
M | 82 | I82T | aTc | aCc | 2524 | 2524 | AY.30 | 0.998813 |
M | 82 | I82T | aTc | aCc | 2441 | 2442 | AY.4.4 | 0.998773 |
M | 82 | I82T | aTC | aCT | 1 | 2442 | AY.4.4 | 0.000409 |
M | 82 | I82T | aTc | aCc | 2396 | 2396 | AY.23.1 | 1 |
M | 82 | I82T | aTc | aCc | 2319 | 2319 | AY.24 | 0.999569 |
M | 82 | I82T | aTc | aCc | 2316 | 2316 | AY.85 | 0.989321 |
M | 82 | I82T | aTc | aCc | 2268 | 2268 | AY.84 | 0.992126 |
M | 82 | I82T | aTc | aCc | 2258 | 2258 | AY.94 | 0.999557 |
M | 82 | I82T | aTc | aCc | 2147 | 2147 | AY.48 | 0.998605 |
M | 82 | I82T | aTc | aCc | 2146 | 2146 | AY.107 | 1 |
M | 82 | I82T | aTc | aCc | 2127 | 2128 | AY.16.1 | 0.99953 |
M | 82 | I82T | aTC | aCT | 1 | 2128 | AY.16.1 | 0.00047 |
M | 82 | I82T | aTc | aCc | 2095 | 2095 | AY.71 | 0.995249 |
M | 82 | I82T | aTc | aCc | 2072 | 2075 | AY.67 | 0.961931 |
M | 82 | I82T | aTC | aCT | 3 | 2075 | AY.67 | 0.001393 |
M | 82 | I82P | ATc | CCc | 2048 | 2048 | AY.4 | 0.003188 |
M | 82 | I82T | aTc | aCc | 2014 | 2014 | AY.101 | 0.987739 |
M | 82 | I82T | aTc | aCc | 2004 | 2004 | AY.120.2.1 | 0.998505 |
M | 82 | I82T | aTc | aCc | 2003 | 2003 | AY.38 | 1 |
M | 82 | I82T | aTc | aCc | 1961 | 1961 | AY.34.1 | 1 |
M | 82 | I82T | aTc | aCc | 1887 | 1887 | AY.10 | 1 |
M | 82 | I82T | aTc | aCc | 1885 | 1885 | AY.59 | 0.998411 |
M | 82 | I82T | aTc | aCc | 1877 | 1878 | AY.62 | 0.817865 |
M | 82 | I82T | aTC | aCT | 1 | 1878 | AY.62 | 0.000436 |
M | 82 | I82T | aTc | aCc | 1856 | 1856 | AY.65 | 0.989339 |
M | 82 | I82T | aTc | aCc | 1764 | 1764 | AY.7.2 | 0.986577 |
M | 82 | I82T | aTc | aCc | 1739 | 1740 | AY.32 | 0.925985 |
M | 82 | I82T | aTC | aCT | 1 | 1740 | AY.32 | 0.000532 |
M | 82 | I82T | aTc | aCc | 1740 | 1740 | C.36.3 | 0.986954 |
M | 82 | I82T | aTc | aCc | 1691 | 1691 | B.1 | 0.015489 |
M | 82 | I82T | aTc | aCc | 1676 | 1676 | AY.64 | 0.997619 |
M | 82 | I82I | atC | atT | 1494 | 1657 | All | 0.000286 |
M | 82 | I82I | atC | atA | 163 | 1657 | All | 0.000031 |
M | 82 | I82T | aTc | aCc | 1650 | 1650 | AY.8 | 1 |
M | 82 | I82T | aTc | aCc | 1559 | 1559 | B.1.619.1 | 1 |
M | 82 | I82T | aTc | aCc | 1555 | 1555 | AY.105 | 1 |
M | 82 | I82T | aTc | aCc | 1524 | 1524 | AY.57 | 1 |
M | 82 | I82T | aTc | aCc | 1509 | 1510 | AY.46.2 | 0.958704 |
M | 82 | I82T | aTC | aCT | 1 | 1510 | AY.46.2 | 0.000635 |
M | 82 | I82T | aTc | aCc | 1503 | 1503 | AY.73 | 1 |
M | 82 | I82T | aTc | aCc | 1461 | 1461 | AY.90 | 1 |
M | 82 | I82T | aTc | aCc | 1380 | 1380 | AY.39.1.1 | 1 |
M | 82 | I82T | aTc | aCc | 1367 | 1367 | AY.91 | 0.998539 |
M | 82 | I82T | aTc | aCc | 1356 | 1356 | AY.4.1 | 1 |
M | 82 | I82T | aTc | aCc | 1351 | 1351 | AY.109 | 0.99926 |
M | 82 | I82T | aTc | aCc | 1305 | 1306 | AY.95 | 0.993151 |
M | 82 | I82T | aTC | aCT | 1 | 1306 | AY.95 | 0.000761 |
M | 82 | I82T | aTc | aCc | 1247 | 1247 | AY.50 | 0.996803 |
M | 82 | I82T | aTc | aCc | 1221 | 1221 | AY.52 | 0.9943 |
M | 82 | I82T | aTc | aCc | 1215 | 1215 | AZ.2 | 0.997537 |
M | 82 | I82T | aTc | aCc | 1205 | 1205 | AY.86 | 1 |
M | 82 | I82T | aTc | aCc | 1200 | 1200 | AY.87 | 0.999167 |
M | 82 | I82T | aTc | aCc | 1153 | 1153 | AZ.1 | 1 |
M | 82 | I82T | aTc | aCc | 1131 | 1131 | AY.88 | 1 |
M | 82 | I82T | aTc | aCc | 1127 | 1127 | B.1.619 | 0.981707 |
M | 82 | I82T | aTc | aCc | 1100 | 1100 | AY.58 | 0.998185 |
M | 82 | I82T | aTc | aCc | 1098 | 1098 | AY.4.3 | 0.924242 |
M | 82 | I82T | aTc | aCc | 1095 | 1095 | AY.51 | 0.995455 |
M | 82 | I82T | aTc | aCc | 1090 | 1090 | AY.55 | 1 |
M | 82 | I82T | aTc | aCc | 1071 | 1071 | AY.46.3 | 1 |
M | 82 | I82T | aTc | aCc | 1053 | 1053 | AY.60 | 0.987805 |
M | 82 | I82T | aTc | aCc | 1029 | 1030 | AY.40 | 0.992285 |
M | 82 | I82T | aTC | aCA | 1 | 1030 | AY.40 | 0.000964 |
M | 82 | I82T | aTc | aCc | 947 | 951 | AY.99 | 0.993704 |
M | 82 | I82T | aTC | aCT | 4 | 951 | AY.99 | 0.004197 |
M | 82 | I82T | aTc | aCc | 932 | 932 | AY.66 | 0.996791 |
M | 82 | I82T | aTc | aCc | 907 | 907 | AY.108 | 1 |
M | 82 | I82T | aTc | aCc | 887 | 887 | AY.77 | 1 |
M | 82 | I82T | aTc | aCc | 886 | 886 | AY.80 | 1 |
M | 82 | I82T | aTc | aCc | 876 | 876 | AY.19 | 0.99886 |
M | 82 | I82T | aTc | aCc | 840 | 840 | AY.46.1 | 0.862423 |
M | 82 | I82T | aTc | aCc | 826 | 826 | AY.79 | 1 |
M | 82 | I82T | aTc | aCc | 776 | 776 | AY.120.2 | 0.997429 |
M | 82 | I82T | aTc | aCc | 747 | 747 | AY.11 | 1 |
M | 82 | I82T | aTc | aCc | 737 | 737 | AY.82 | 1 |
M | 82 | I82T | aTc | aCc | 729 | 729 | AY.72 | 0.991837 |
M | 82 | I82T | aTc | aCc | 655 | 655 | AZ.3 | 0.995441 |
M | 82 | I82T | aTc | aCc | 649 | 649 | AY.39.2 | 1 |
M | 82 | I82T | aTc | aCc | 649 | 649 | AY.78 | 1 |
M | 82 | I82T | aTc | aCc | 644 | 644 | AY.99.1 | 1 |
M | 82 | I82T | aTc | aCc | 623 | 623 | AY.56 | 1 |
M | 82 | I82T | aTc | aCc | 616 | 616 | B.1.1.523 | 0.9625 |
M | 82 | I82I | atC | atT | 597 | 604 | B.1.1.7 | 0.000534 |
M | 82 | I82I | atC | atA | 7 | 604 | B.1.1.7 | 0.000006 |
M | 82 | I82T | aTc | aCc | 585 | 585 | AY.97 | 0.994898 |
M | 82 | I82T | aTc | aCc | 580 | 580 | AY.83 | 1 |
M | 82 | I82T | aTc | aCc | 529 | 529 | AY.28 | 1 |
M | 82 | I82T | aTc | aCc | 527 | 527 | AY.21 | 1 |
M | 82 | I82T | aTc | aCc | 509 | 509 | B | 0.065056 |
M | 82 | I82T | aTc | aCc | 506 | 506 | AY.9.2.1 | 1 |
M | 82 | I82T | aTc | aCc | 503 | 504 | AY.104 | 0.998016 |
M | 82 | I82T | aTC | aCA | 1 | 504 | AY.104 | 0.001984 |
M | 82 | I82T | aTc | aCc | 502 | 502 | AY.81 | 1 |
M | 82 | I82T | aTc | aCc | 478 | 478 | AY.22 | 1 |
M | 82 | I82T | aTc | aCc | 473 | 473 | AY.96 | 0.981328 |
M | 82 | I82T | aTc | aCc | 449 | 449 | AY.15 | 0.997778 |
M | 82 | I82P | ATc | CCc | 423 | 423 | AY.4.2 | 0.009174 |
M | 82 | I82T | aTc | aCc | 412 | 412 | B.1.625 | 0.969412 |
M | 82 | I82T | aTc | aCc | 406 | 406 | AY.5.2 | 1 |
M | 82 | I82T | aTc | aCc | 394 | 394 | B.1.575.1 | 0.960976 |
M | 82 | I82T | aTc | aCc | 373 | 373 | B.1.1.7 | 0.000334 |
M | 82 | I82T | aTc | aCc | 368 | 368 | C.36.3.1 | 1 |
M | 82 | I82V | Atc | Gtc | 363 | 365 | All | 0.000069 |
M | 82 | I82V | AtC | GtT | 2 | 365 | All | 0 |
M | 82 | I82T | aTc | aCc | 309 | 309 | AY.49 | 0.98722 |
M | 82 | I82T | aTc | aCc | 298 | 298 | AZ.4 | 1 |
M | 82 | I82T | aTc | aCc | 285 | 285 | AZ.5 | 1 |
M | 82 | I82T | aTc | aCc | 266 | 266 | AY.5.1 | 1 |
M | 82 | I82T | aTc | aCc | 246 | 246 | AY.91.1 | 1 |
M | 82 | I82A | ATc | GCc | 223 | 223 | All | 0.000043 |
M | 82 | I82T | aTc | aCc | 218 | 218 | C.1.2 | 0.92766 |
M | 82 | I82T | aTc | aCc | 208 | 208 | B.1.575.2 | 1 |
M | 82 | I82T | aTc | aCc | 207 | 207 | AY.76 | 1 |
M | 82 | I82T | aTc | aCc | 204 | 204 | AY.89 | 1 |
M | 82 | I82P | ATc | CCc | 193 | 193 | B.1.617.2 | 0.000727 |
M | 82 | I82V | Atc | Gtc | 192 | 192 | C.37 | 0.022284 |
M | 82 | I82T | aTc | aCc | 190 | 190 | AY.115 | 0.989583 |
M | 82 | I82S | aTc | aGc | 185 | 185 | A.29 | 0.984043 |
M | 82 | I82I | atC | atT | 179 | 179 | B.1.1.205 | 0.665428 |
M | 82 | I82S | aTc | aGc | 173 | 173 | B.1.626 | 0.988571 |
M | 82 | I82P | ATc | CCc | 152 | 152 | AY.43 | 0.000673 |
M | 82 | I82T | aTc | aCc | 151 | 152 | B.1.1 | 0.002739 |
M | 82 | I82T | aTC | aCT | 1 | 152 | B.1.1 | 0.000018 |
M | 82 | I82T | aTc | aCc | 148 | 148 | B.1.632 | 0.993289 |
M | 82 | I82T | aTc | aCc | 142 | 142 | B.1.1.528 | 0.682692 |
M | 82 | I82I | atC | atA | 126 | 138 | R.1 | 0.011341 |
M | 82 | I82I | atC | atT | 12 | 138 | R.1 | 0.00108 |
M | 82 | I82A | ATc | GCc | 131 | 131 | AY.103 | 0.000813 |
M | 82 | I82T | aTc | aCc | 128 | 128 | B.1.415.1 | 0.969697 |
M | 82 | I82T | aTc | aCc | 123 | 123 | AZ.2.1 | 1 |
M | 82 | I82T | aTc | aCc | 122 | 122 | AY.17 | 1 |
M | 82 | I82T | aTc | aCc | 119 | 119 | AZ.6 | 1 |
M | 82 | I82T | aTc | aCc | 119 | 119 | C.38 | 0.959677 |
M | 82 | I82T | aTc | aCc | 99 | 99 | AY.18 | 1 |
M | 82 | I82del | ATC | --- | 86 | 86 | All | 0.000016 |
M | 82 | I82P | ATc | CCc | 85 | 85 | AY.5 | 0.001755 |
M | 82 | I82S | aTc | aGc | 78 | 78 | B.1 | 0.000714 |
M | 82 | I82I | atC | atT | 71 | 71 | AP.1 | 0.106607 |
M | 82 | I82S | aTc | aGc | 70 | 70 | B.1.629 | 0.933333 |
M | 82 | I82P | ATc | CCc | 66 | 66 | AY.4.2.1 | 0.009833 |
M | 82 | I82P | ATc | CCc | 65 | 65 | AY.120 | 0.002417 |
M | 82 | I82S | aTc | aGc | 62 | 62 | B.1.1.7 | 0.000056 |
M | 82 | I82I | atC | atT | 58 | 60 | B.1.1 | 0.001052 |
M | 82 | I82I | atC | atA | 2 | 60 | B.1.1 | 0.000036 |
M | 82 | I82P | ATc | CCc | 59 | 59 | AY.6 | 0.002427 |
M | 82 | I82I | atC | atT | 59 | 59 | B.1 | 0.00054 |
M | 82 | I82del | ATC | --- | 57 | 57 | B.1.177.21 | 0.004359 |
M | 82 | I82T | aTc | aCc | 54 | 54 | AY.31 | 1 |
M | 82 | I82T | aTc | aCc | 53 | 53 | B.1.596 | 0.004618 |
M | 82 | I82P | ATc | CCc | 43 | 43 | AY.111 | 0.007875 |
M | 82 | I82T | aTc | aCc | 40 | 40 | B.1.1.294 | 0.050633 |
M | 82 | I82T | aTc | aCc | 40 | 40 | B.1.576 | 0.036265 |
M | 82 | I82T | aTc | aCc | 40 | 40 | P.1.12 | 0.019361 |
M | 82 | I82I | atC | atT | 24 | 39 | B.1.2 | 0.000211 |
M | 82 | I82I | atC | atA | 15 | 39 | B.1.2 | 0.000132 |
M | 82 | I82T | aTc | aCc | 38 | 38 | A | 0.014706 |
M | 82 | I82T | aTc | aCc | 38 | 38 | B.1.2 | 0.000335 |
M | 82 | I82I | atC | atT | 35 | 37 | P.1 | 0.000551 |
M | 82 | I82I | atC | atA | 2 | 37 | P.1 | 0.000032 |
M | 82 | I82I | atC | atT | 35 | 35 | B.1.258.17 | 0.003639 |
M | 82 | I82I | atC | atT | 35 | 35 | Q.8 | 0.005772 |
M | 82 | I82T | aTc | aCc | 34 | 34 | P.1 | 0.000536 |
M | 82 | I82I | atC | atT | 33 | 33 | B.1.177 | 0.000435 |
M | 82 | I82V | Atc | Gtc | 31 | 31 | B.1 | 0.000284 |
M | 82 | I82V | Atc | Gtc | 31 | 31 | P.1.15 | 0.007203 |
M | 82 | I82I | atC | atT | 31 | 31 | Q.3 | 0.004496 |
M | 82 | I82T | aTc | aCc | 30 | 30 | B.1.617.1 | 0.003869 |
M | 82 | I82L | Atc | Ctc | 29 | 29 | All | 0.000006 |
M | 82 | I82S | aTc | aGc | 29 | 29 | B.1.160 | 0.000904 |
M | 82 | I82T | aTc | aCc | 28 | 29 | C.36 | 0.025501 |
M | 82 | I82T | aTC | aCT | 1 | 29 | C.36 | 0.000911 |
M | 82 | I82V | Atc | Gtc | 29 | 29 | R.1 | 0.00261 |
M | 82 | I82L | Atc | Ctc | 28 | 28 | B.1.1.7 | 0.000025 |
M | 82 | I82I | atC | atT | 28 | 28 | B.1.160 | 0.000873 |
M | 82 | I82T | aTc | aCc | 28 | 28 | B.1.427 | 0.001414 |
M | 82 | I82I | atC | atT | 25 | 25 | B.1.1.519 | 0.000993 |
M | 82 | I82A | ATc | GCc | 25 | 25 | B.1.617.2 | 0.000094 |
M | 82 | I82T | aTc | aCc | 24 | 24 | B.1.214.2 | 0.014388 |
M | 82 | I82P | ATc | CCc | 23 | 23 | AY.46.5 | 0.004563 |
M | 82 | I82T | aTc | aCc | 23 | 23 | B.1.595 | 0.006002 |
M | 82 | I82T | aTc | aCc | 21 | 21 | B.1.623 | 0.011266 |
M | 82 | I82T | aTc | aCc | 21 | 21 | C.37 | 0.002437 |
M | 82 | I82I | atC | atT | 20 | 21 | D.2 | 0.001501 |
M | 82 | I82I | atC | atA | 1 | 21 | D.2 | 0.000075 |
M | 82 | I82T | aTc | aCc | 20 | 20 | B.1.395 | 0.140845 |
M | 82 | I82T | aTc | aCc | 19 | 19 | B.1.177 | 0.00025 |
M | 82 | I82V | Atc | Gtc | 19 | 19 | B.1.2 | 0.000167 |
M | 82 | I82P | ATc | CCc | 17 | 17 | AY.98 | 0.001343 |
M | 82 | I82T | aTc | aCc | 17 | 17 | B.1.633 | 0.708333 |
M | 82 | I82T | aTc | aCc | 16 | 16 | B.1.177.73 | 0.00906 |
M | 82 | I82I | atC | atT | 16 | 16 | B.1.221 | 0.001137 |
M | 82 | I82T | aTc | aCc | 15 | 15 | B.1.1.526 | 0.053191 |
M | 82 | I82T | aTc | aCc | 15 | 15 | B.1.351 | 0.000446 |
M | 82 | I82I | atC | atT | 15 | 15 | B.1.36.29 | 0.00776 |
M | 82 | I82I | atC | atT | 14 | 14 | B.1.1.28 | 0.004357 |
M | 82 | I82I | atC | atT | 12 | 14 | B.1.400 | 0.005148 |
M | 82 | I82I | atC | atA | 2 | 14 | B.1.400 | 0.000858 |
M | 82 | I82P | ATc | CCc | 13 | 13 | AY.34 | 0.001261 |
M | 82 | I82del1 | aTc | a-c | 10 | 12 | All | 0.000002 |
M | 82 | I82del1 | Atc | -tc | 2 | 12 | All | 0 |
M | 82 | I82P | ATc | CCc | 12 | 12 | AY.3 | 0.000119 |
M | 82 | I82P | ATc | CCc | 12 | 12 | AY.36 | 0.001779 |
M | 82 | I82V | Atc | Gtc | 12 | 12 | B.1.1.7 | 0.000011 |
M | 82 | I82del | ATC | --- | 12 | 12 | B.1.1.7 | 0.000011 |
M | 82 | I82N | aTc | aAc | 11 | 11 | All | 0.000002 |
M | 82 | I82S | aTc | aGc | 11 | 11 | B.1.1 | 0.0002 |
M | 82 | I82I | atC | atT | 11 | 11 | B.1.469 | 0.039711 |
M | 82 | I82T | aTc | aCc | 11 | 11 | Q.4 | 0.005002 |
M | 82 | I82A | ATc | GCc | 10 | 10 | AY.9 | 0.000676 |
M | 82 | I82T | aTc | aCc | 10 | 10 | B.1.375 | 0.008197 |
M | 82 | I82V | Atc | Gtc | 10 | 10 | B.1.497 | 0.003148 |
M | 82 | I82A | ATc | GCc | 9 | 9 | AY.29 | 0.000142 |
M | 82 | I82T | aTc | aCc | 9 | 9 | B.1.399 | 0.017408 |
M | 82 | I82T | aTc | aCc | 9 | 9 | B.1.621 | 0.000797 |
M | 82 | I82I | atC | atT | 9 | 9 | P.1.15 | 0.002091 |
M | 82 | I82A | ATc | GCc | 8 | 8 | AY.4 | 0.000012 |
M | 82 | I82I | atC | atT | 8 | 8 | B.1.1.63 | 0.003086 |
M | 82 | I82S | aTc | aGc | 8 | 8 | P.1 | 0.000126 |
M | 82 | I82T | aTc | aCc | 7 | 7 | A.30 | 1 |
M | 82 | I82A | ATc | GCc | 7 | 7 | AY.44 | 0.000043 |
M | 82 | I82P | ATc | CCc | 7 | 7 | AY.9.2 | 0.000257 |
M | 82 | I82T | aTc | aCc | 7 | 7 | B.1.157 | 0.020896 |
M | 82 | I82I | atC | atT | 7 | 7 | B.1.427 | 0.000353 |
M | 82 | I82I | atC | atT | 7 | 7 | B.1.526 | 0.000165 |
M | 82 | I82T | aTc | aCc | 7 | 7 | B.1.628 | 0.002467 |
M | 82 | I82S | aTc | aGc | 6 | 6 | A | 0.002322 |
M | 82 | I82P | ATc | CCc | 6 | 6 | AY.39 | 0.000148 |
M | 82 | I82P | ATc | CCc | 6 | 6 | AY.42 | 0.000241 |
M | 82 | I82P | ATc | CCc | 6 | 6 | AY.9 | 0.000406 |
M | 82 | I82S | aTc | aGc | 6 | 6 | B | 0.000767 |
M | 82 | I82I | atC | atT | 6 | 6 | B.1.1.207 | 0.007092 |
M | 82 | I82T | aTc | aCc | 6 | 6 | B.1.1.34 | 0.078947 |
M | 82 | I82T | aTc | aCc | 6 | 6 | B.1.128 | 0.003812 |
M | 82 | I82V | Atc | Gtc | 6 | 6 | B.1.177.35 | 0.004147 |
M | 82 | I82T | aTc | aCc | 6 | 6 | B.1.214 | 0.021978 |
M | 82 | I82I | atC | atT | 6 | 6 | B.1.234 | 0.000792 |
M | 82 | I82T | aTc | aCc | 6 | 6 | B.1.466.2 | 0.002347 |
M | 82 | I82I | atC | atT | 4 | 6 | B.1.596 | 0.000349 |
M | 82 | I82I | atC | atA | 2 | 6 | B.1.596 | 0.000174 |
M | 82 | I82I | atC | atT | 6 | 6 | C.37 | 0.000696 |
M | 82 | I82A | ATc | GCc | 5 | 5 | AY.25 | 0.00003 |
M | 82 | I82P | ATc | CCc | 5 | 5 | AY.25 | 0.00003 |
M | 82 | I82A | ATc | GCc | 5 | 5 | AY.92 | 0.001436 |
M | 82 | I82T | aTc | aCc | 5 | 5 | B.1.131 | 0.04386 |
M | 82 | I82T | aTc | aCc | 5 | 5 | B.1.240 | 0.001078 |
M | 82 | I82I | atC | atT | 5 | 5 | B.1.243 | 0.000348 |
M | 82 | I82I | atC | atT | 5 | 5 | B.1.258 | 0.000333 |
M | 82 | I82I | atC | atT | 5 | 5 | B.1.351 | 0.000149 |
M | 82 | I82T | aTc | aCc | 5 | 5 | B.1.604 | 0.086207 |
M | 82 | I82I | atC | atT | 5 | 5 | B.1.621 | 0.000443 |
M | 82 | I82T | aTc | aCc | 5 | 5 | B.1.637 | 0.000365 |
M | 82 | I82V | Atc | Gtc | 5 | 5 | P.1 | 0.000079 |
M | 82 | I82del | ATC | --- | 4 | 4 | 0.222222 | |
M | 82 | I82I | atC | atT | 4 | 4 | A.27 | 0.006623 |
M | 82 | I82F | Atc | Ttc | 4 | 4 | All | 0.000001 |
M | 82 | I82P | ATc | CCc | 4 | 4 | AY.4.1 | 0.00295 |
M | 82 | I82P | ATc | CCc | 4 | 4 | AY.98.1 | 0.000194 |
M | 82 | I82V | Atc | Gtc | 4 | 4 | B.1.1.220 | 0.007435 |
M | 82 | I82T | aTc | aCc | 4 | 4 | B.1.160 | 0.000125 |
M | 82 | I82I | atC | atT | 4 | 4 | B.1.177.23 | 0.012945 |
M | 82 | I82I | atC | atT | 4 | 4 | B.1.177.44 | 0.002076 |
M | 82 | I82T | aTc | aCc | 4 | 4 | B.1.177.7 | 0.000659 |
M | 82 | I82I | atC | atT | 4 | 4 | B.1.258.22 | 0.010667 |
M | 82 | I82I | atC | atT | 4 | 4 | B.1.429 | 0.000094 |
M | 82 | I82T | aTc | aCc | 4 | 4 | B.1.609 | 0.001918 |
M | 82 | I82T | aTc | aCc | 4 | 4 | B.1.629 | 0.053333 |
M | 82 | I82T | aTc | aCc | 4 | 4 | B.1.81 | 0.085106 |
M | 82 | I82T | aTc | aCc | 4 | 4 | B.55 | 0.011799 |
M | 82 | I82T | aTc | aCc | 3 | 3 | 0.166667 | |
M | 82 | I82T | aTc | aCc | 3 | 3 | A.2.5 | 0.001497 |
M | 82 | I82M | atC | atG | 3 | 3 | All | 0.000001 |
M | 82 | I82del2 | aTC | a-- | 2 | 3 | All | 0 |
M | 82 | I82del2 | ATC | G-- | 1 | 3 | All | 0 |
M | 82 | I82A | ATc | GCc | 3 | 3 | AY.4.2 | 0.000065 |
M | 82 | I82P | ATc | CCc | 3 | 3 | AY.4.5 | 0.000322 |
M | 82 | I82P | ATc | CCc | 3 | 3 | AY.75 | 0.000168 |
M | 82 | I82P | ATc | CCc | 3 | 3 | AY.85 | 0.001282 |
M | 82 | I82P | ATc | CCc | 3 | 3 | AY.87 | 0.002498 |
M | 82 | I82I | atC | atT | 3 | 3 | B.1.1.301 | 0.003538 |
M | 82 | I82T | aTc | aCc | 3 | 3 | B.1.1.372 | 0.002066 |
M | 82 | I82I | atC | atT | 3 | 3 | B.1.1.39 | 0.001529 |
M | 82 | I82M | atC | atG | 3 | 3 | B.1.1.519 | 0.000119 |
M | 82 | I82S | aTc | aGc | 3 | 3 | B.1.1.523 | 0.004687 |
M | 82 | I82I | atC | atT | 3 | 3 | B.1.177.40 | 0.015464 |
M | 82 | I82I | atC | atT | 3 | 3 | B.1.177.60 | 0.000655 |
M | 82 | I82V | Atc | Gtc | 3 | 3 | B.1.240 | 0.000647 |
M | 82 | I82T | aTc | aCc | 3 | 3 | B.1.243 | 0.000209 |
M | 82 | I82I | atC | atT | 3 | 3 | B.1.36.31 | 0.005254 |
M | 82 | I82V | Atc | Gtc | 3 | 3 | B.1.416.1 | 0.004687 |
M | 82 | I82T | aTc | aCc | 3 | 3 | B.1.462 | 0.021739 |
M | 82 | I82T | aTc | aCc | 3 | 3 | B.1.474 | 0.005703 |
M | 82 | I82T | aTc | aCc | 3 | 3 | B.1.517 | 0.001281 |
M | 82 | I82T | aTc | aCc | 3 | 3 | B.1.526 | 0.000071 |
M | 82 | I82T | aTc | aCc | 3 | 3 | B.1.530 | 0.021429 |
M | 82 | I82T | aTc | aCc | 3 | 3 | B.1.538 | 0.024194 |
M | 82 | I82I | atC | atT | 3 | 3 | B.1.617.1 | 0.000387 |
M | 82 | I82del1 | aTc | a-c | 3 | 3 | B.1.617.1 | 0.000387 |
M | 82 | I82S | aTc | aGc | 3 | 3 | B.1.617.2 | 0.000011 |
M | 82 | I82del1 | aTc | a-c | 2 | 3 | B.1.617.2 | 0.000008 |
M | 82 | I82del1 | Atc | -tc | 1 | 3 | B.1.617.2 | 0.000004 |
M | 82 | I82T | aTc | aCc | 3 | 3 | B.1.638 | 0.157895 |
M | 82 | I82T | aTc | aCc | 3 | 3 | B.40 | 0.001093 |
M | 82 | I82V | Atc | Gtc | 3 | 3 | C.37.1 | 0.007853 |
M | 82 | I82I | atC | atT | 3 | 3 | P.1.14 | 0.000143 |
M | 82 | I82T | aTc | aCc | 3 | 3 | P.1.17 | 0.000485 |
M | 82 | I82T | aTc | aCc | 3 | 3 | Q.7 | 0.003333 |
M | 82 | I82V | AtC | GtT | 2 | 2 | 0.111111 | |
M | 82 | I82I | atC | atT | 2 | 2 | 0.111111 | |
M | 82 | I82I | atC | atT | 1 | 2 | AE.8 | 0.000489 |
M | 82 | I82I | atC | atA | 1 | 2 | AE.8 | 0.000489 |
M | 82 | I82T | aTc | aCc | 2 | 2 | AU.2 | 0.004843 |
M | 82 | I82T | aTc | aCc | 2 | 2 | AU.3 | 0.004219 |
M | 82 | I82A | ATc | GCc | 2 | 2 | AY.100 | 0.000092 |
M | 82 | I82A | ATc | GCc | 2 | 2 | AY.102 | 0.000053 |
M | 82 | I82P | ATc | CCc | 2 | 2 | AY.102 | 0.000053 |
M | 82 | I82P | ATc | CCc | 2 | 2 | AY.109 | 0.001479 |
M | 82 | I82S | aTc | aGc | 2 | 2 | AY.117 | 0.000169 |
M | 82 | I82del1 | aTc | a-c | 2 | 2 | AY.16 | 0.000759 |
M | 82 | I82A | ATc | GCc | 2 | 2 | AY.20 | 0.000078 |
M | 82 | I82P | ATc | CCc | 2 | 2 | AY.33 | 0.000134 |
M | 82 | I82N | aTc | aAc | 2 | 2 | AY.4 | 0.000003 |
M | 82 | I82A | ATc | GCc | 2 | 2 | AY.43 | 0.000009 |
M | 82 | I82N | aTc | aAc | 2 | 2 | AY.44 | 0.000012 |
M | 82 | I82P | ATc | CCc | 2 | 2 | AY.46.6 | 0.000144 |
M | 82 | I82A | ATc | GCc | 2 | 2 | AY.5 | 0.000041 |
M | 82 | I82P | ATc | CCc | 2 | 2 | AY.7 | 0.000392 |
M | 82 | I82del | ATC | --- | 2 | 2 | AY.75.1 | 0.000361 |
M | 82 | I82A | ATc | GCc | 2 | 2 | AY.9.1 | 0.000167 |
M | 82 | I82P | ATc | CCc | 2 | 2 | AY.9.1 | 0.000167 |
M | 82 | I82P | ATc | CCc | 2 | 2 | AY.90 | 0.001369 |
M | 82 | I82P | ATc | CCc | 2 | 2 | AY.91 | 0.001461 |
M | 82 | I82del1 | aTc | a-c | 2 | 2 | B.1 | 0.000018 |
M | 82 | I82V | Atc | Gtc | 2 | 2 | B.1.1 | 0.000036 |
M | 82 | I82del1 | aTc | a-c | 1 | 2 | B.1.1 | 0.000018 |
M | 82 | I82del1 | Atc | -tc | 1 | 2 | B.1.1 | 0.000018 |
M | 82 | I82T | aTc | aCc | 2 | 2 | B.1.1.10 | 0.00223 |
M | 82 | I82I | atC | atT | 2 | 2 | B.1.1.174 | 0.006757 |
M | 82 | I82I | atC | atA | 1 | 2 | B.1.1.192 | 0.002309 |
M | 82 | I82I | atC | atT | 1 | 2 | B.1.1.192 | 0.002309 |
M | 82 | I82I | atC | atT | 2 | 2 | B.1.1.208 | 0.02439 |
M | 82 | I82I | atC | atT | 2 | 2 | B.1.1.216 | 0.001781 |
M | 82 | I82I | atC | atT | 2 | 2 | B.1.1.265 | 0.006309 |
M | 82 | I82T | aTc | aCc | 2 | 2 | B.1.1.291 | 0.001485 |
M | 82 | I82I | atC | atT | 2 | 2 | B.1.1.37 | 0.000386 |
M | 82 | I82T | aTc | aCc | 2 | 2 | B.1.143 | 0.042553 |
M | 82 | I82N | aTc | aAc | 2 | 2 | B.1.160 | 0.000062 |
M | 82 | I82I | atC | atA | 2 | 2 | B.1.177.42 | 0.001789 |
M | 82 | I82I | atC | atT | 2 | 2 | B.1.177.57 | 0.000562 |
M | 82 | I82T | aTc | aCc | 2 | 2 | B.1.177.86 | 0.000367 |
M | 82 | I82T | aTc | aCc | 2 | 2 | B.1.208 | 0.08 |
M | 82 | I82T | aTc | aCc | 2 | 2 | B.1.221 | 0.000142 |
M | 82 | I82T | aTc | aCc | 2 | 2 | B.1.258.3 | 0.00335 |
M | 82 | I82T | aTc | aCc | 2 | 2 | B.1.324 | 0.00321 |
M | 82 | I82S | aTc | aGc | 2 | 2 | B.1.351 | 0.000059 |
M | 82 | I82T | aTc | aCc | 2 | 2 | B.1.367 | 0.001585 |
M | 82 | I82S | aTc | aGc | 2 | 2 | B.1.369 | 0.00057 |
M | 82 | I82T | aTc | aCc | 2 | 2 | B.1.369 | 0.00057 |
M | 82 | I82T | aTc | aCc | 2 | 2 | B.1.378 | 0.013699 |
M | 82 | I82I | atC | atT | 2 | 2 | B.1.389 | 0.002004 |
M | 82 | I82T | aTc | aCc | 2 | 2 | B.1.397 | 0.009709 |
M | 82 | I82T | aTc | aCc | 2 | 2 | B.1.432 | 0.022472 |
M | 82 | I82T | aTc | aCc | 2 | 2 | B.1.433 | 0.00639 |
M | 82 | I82T | aTc | aCc | 2 | 2 | B.1.448 | 0.005249 |
M | 82 | I82I | atC | atT | 2 | 2 | B.1.466.2 | 0.000782 |
M | 82 | I82T | aTc | aCc | 2 | 2 | B.1.485 | 0.029851 |
M | 82 | I82V | Atc | Gtc | 2 | 2 | B.1.517 | 0.000854 |
M | 82 | I82S | aTc | aGc | 2 | 2 | B.1.596 | 0.000174 |
M | 82 | I82T | aTc | aCc | 2 | 2 | B.1.600 | 0.011696 |
M | 82 | I82S | aTc | aGc | 2 | 2 | B.1.615 | 0.08 |
M | 82 | I82I | atC | atT | 2 | 2 | B.1.620 | 0.001892 |
M | 82 | I82S | aTc | aGc | 2 | 2 | B.1.638 | 0.105263 |
M | 82 | I82I | atC | atT | 2 | 2 | C.14 | 0.008658 |
M | 82 | I82T | aTc | aCc | 2 | 2 | C.37.1 | 0.005236 |
M | 82 | I82I | atC | atT | 2 | 2 | L.2 | 0.022727 |
M | 82 | I82T | aTc | aCc | 2 | 2 | P.1.13 | 0.001797 |
M | 82 | I82T | aTc | aCc | 2 | 2 | P.1.14 | 0.000096 |
M | 82 | I82I | atC | atT | 2 | 2 | P.1.4 | 0.001953 |
M | 82 | I82T | aTc | aCc | 2 | 2 | P.1.7 | 0.000639 |
M | 82 | I82T | aTc | aCc | 1 | 1 | A.1 | 0.000282 |
M | 82 | I82T | aTc | aCc | 1 | 1 | A.2 | 0.000662 |
M | 82 | I82T | aTc | aCc | 1 | 1 | A.23 | 0.010526 |
M | 82 | I82T | aTc | aCc | 1 | 1 | A.23.1 | 0.000704 |
M | 82 | I82I | atC | atT | 1 | 1 | A.23.1 | 0.000704 |
M | 82 | I82T | aTc | aCc | 1 | 1 | A.25 | 0.018182 |
M | 82 | I82S | aTc | aGc | 1 | 1 | A.27 | 0.001656 |
M | 82 | I82I | atC | atT | 1 | 1 | A.3 | 0.002096 |
M | 82 | I82I | atC | atT | 1 | 1 | AD.2 | 0.000219 |
M | 82 | I82N | aTc | aAc | 1 | 1 | AY.103 | 0.000006 |
M | 82 | I82I | atC | atA | 1 | 1 | AY.117 | 0.000085 |
M | 82 | I82del | ATC | --- | 1 | 1 | AY.120 | 0.000037 |
M | 82 | I82F | Atc | Ttc | 1 | 1 | AY.120.1 | 0.000321 |
M | 82 | I82P | ATc | CCc | 1 | 1 | AY.120.1 | 0.000321 |
M | 82 | I82A | ATc | GCc | 1 | 1 | AY.14 | 0.000088 |
M | 82 | I82A | ATc | GCc | 1 | 1 | AY.3 | 0.00001 |
M | 82 | I82N | aTc | aAc | 1 | 1 | AY.33 | 0.000067 |
M | 82 | I82P | ATc | CCc | 1 | 1 | AY.39.1 | 0.00004 |
M | 82 | I82P | ATc | CCc | 1 | 1 | AY.4.4 | 0.000409 |
M | 82 | I82P | ATc | CCc | 1 | 1 | AY.41 | 0.000294 |
M | 82 | I82S | ATc | TCc | 1 | 1 | AY.43 | 0.000004 |
M | 82 | I82N | aTc | aAc | 1 | 1 | AY.43 | 0.000004 |
M | 82 | I82P | ATc | CCc | 1 | 1 | AY.45 | 0.000122 |
M | 82 | I82A | ATc | GCc | 1 | 1 | AY.45 | 0.000122 |
M | 82 | I82P | ATc | CCc | 1 | 1 | AY.46 | 0.000104 |
M | 82 | I82P | ATc | CCc | 1 | 1 | AY.46.3 | 0.000934 |
M | 82 | I82P | ATc | CCc | 1 | 1 | AY.46.4 | 0.000165 |
M | 82 | I82P | ATc | CCc | 1 | 1 | AY.47 | 0.000031 |
M | 82 | I82A | ATc | GCc | 1 | 1 | AY.61 | 0.000105 |
M | 82 | I82S | aTc | aGc | 1 | 1 | AY.75 | 0.000056 |
M | 82 | I82A | ATc | GCc | 1 | 1 | AY.75 | 0.000056 |
M | 82 | I82P | ATc | CCc | 1 | 1 | AY.79 | 0.001211 |
M | 82 | I82A | ATc | GCc | 1 | 1 | AY.84 | 0.000437 |
M | 82 | I82P | ATc | CCc | 1 | 1 | AY.86 | 0.00083 |
M | 82 | I82P | ATc | CCc | 1 | 1 | AY.94 | 0.000443 |
M | 82 | I82N | aTc | aAc | 1 | 1 | AY.98 | 0.000079 |
M | 82 | I82N | aTc | aAc | 1 | 1 | AY.98.1 | 0.000048 |
M | 82 | I82del | ATC | --- | 1 | 1 | B.1 | 0.000009 |
M | 82 | I82A | ATc | GCc | 1 | 1 | B.1 | 0.000009 |
M | 82 | I82F | Atc | Ttc | 1 | 1 | B.1.1 | 0.000018 |
M | 82 | I82del2 | ATC | G-- | 1 | 1 | B.1.1 | 0.000018 |
M | 82 | I82I | atC | atT | 1 | 1 | B.1.1.1 | 0.000327 |
M | 82 | I82I | atC | atT | 1 | 1 | B.1.1.153 | 0.001095 |
M | 82 | I82T | aTc | aCc | 1 | 1 | B.1.1.210 | 0.005714 |
M | 82 | I82I | atC | atA | 1 | 1 | B.1.1.214 | 0.000055 |
M | 82 | I82V | Atc | Gtc | 1 | 1 | B.1.1.216 | 0.00089 |
M | 82 | I82I | atC | atT | 1 | 1 | B.1.1.27 | 0.00565 |
M | 82 | I82V | Atc | Gtc | 1 | 1 | B.1.1.28 | 0.000311 |
M | 82 | I82V | Atc | Gtc | 1 | 1 | B.1.1.284 | 0.000107 |
M | 82 | I82S | aTc | aGc | 1 | 1 | B.1.1.294 | 0.001266 |
M | 82 | I82I | atC | atT | 1 | 1 | B.1.1.302 | 0.002075 |
M | 82 | I82I | atC | atT | 1 | 1 | B.1.1.305 | 0.003861 |
M | 82 | I82I | atC | atT | 1 | 1 | B.1.1.311 | 0.000358 |
M | 82 | I82I | atC | atT | 1 | 1 | B.1.1.317 | 0.000412 |
M | 82 | I82I | atC | atT | 1 | 1 | B.1.1.319 | 0.017544 |
M | 82 | I82T | aTc | aCc | 1 | 1 | B.1.1.33 | 0.000421 |
M | 82 | I82I | atC | atT | 1 | 1 | B.1.1.335 | 0.012987 |
M | 82 | I82I | atC | atT | 1 | 1 | B.1.1.369 | 0.000446 |
M | 82 | I82del | ATC | --- | 1 | 1 | B.1.1.372 | 0.000689 |
M | 82 | I82I | atC | atT | 1 | 1 | B.1.1.398 | 0.003226 |
M | 82 | I82del2 | aTC | a-- | 1 | 1 | B.1.1.7 | 0.000001 |
M | 82 | I82F | Atc | Ttc | 1 | 1 | B.1.1.7 | 0.000001 |
M | 82 | I82I | atC | atT | 1 | 1 | B.1.117 | 0.0125 |
M | 82 | I82T | aTc | aCc | 1 | 1 | B.1.126 | 0.001276 |
M | 82 | I82T | aTc | aCc | 1 | 1 | B.1.139 | 0.000733 |
M | 82 | I82T | aTc | aCc | 1 | 1 | B.1.142 | 0.002899 |
M | 82 | I82S | aTc | aGc | 1 | 1 | B.1.157 | 0.002985 |
M | 82 | I82T | aTc | aCc | 1 | 1 | B.1.158 | 0.02381 |
M | 82 | I82del | ATC | --- | 1 | 1 | B.1.160 | 0.000031 |
M | 82 | I82V | Atc | Gtc | 1 | 1 | B.1.160.26 | 0.002421 |
M | 82 | I82del | ATC | --- | 1 | 1 | B.1.161 | 0.017241 |
M | 82 | I82V | Atc | Gtc | 1 | 1 | B.1.177.17 | 0.000821 |
M | 82 | I82I | atC | atT | 1 | 1 | B.1.177.19 | 0.001431 |
M | 82 | I82V | Atc | Gtc | 1 | 1 | B.1.177.44 | 0.000519 |
M | 82 | I82I | atC | atT | 1 | 1 | B.1.177.46 | 0.000918 |
M | 82 | I82S | aTc | aGc | 1 | 1 | B.1.177.7 | 0.000165 |
M | 82 | I82S | aTc | aGc | 1 | 1 | B.1.177.73 | 0.000566 |
M | 82 | I82I | atC | atT | 1 | 1 | B.1.177.77 | 0.000726 |
M | 82 | I82I | atC | atT | 1 | 1 | B.1.177.8 | 0.000752 |
M | 82 | I82S | aTc | aGc | 1 | 1 | B.1.2 | 0.000009 |
M | 82 | I82F | Atc | Ttc | 1 | 1 | B.1.221 | 0.000071 |
M | 82 | I82T | aTc | aCc | 1 | 1 | B.1.232 | 0.000537 |
M | 82 | I82T | aTc | aCc | 1 | 1 | B.1.234 | 0.000132 |
M | 82 | I82I | atC | atT | 1 | 1 | B.1.235 | 0.002519 |
M | 82 | I82I | atC | atT | 1 | 1 | B.1.240 | 0.000216 |
M | 82 | I82V | Atc | Gtc | 1 | 1 | B.1.243 | 0.00007 |
M | 82 | I82T | aTc | aCc | 1 | 1 | B.1.258.11 | 0.000396 |
M | 82 | I82del | ATC | --- | 1 | 1 | B.1.258.11 | 0.000396 |
M | 82 | I82I | atC | atT | 1 | 1 | B.1.258.14 | 0.00098 |
M | 82 | I82T | aTc | aCc | 1 | 1 | B.1.258.17 | 0.000104 |
M | 82 | I82I | atC | atT | 1 | 1 | B.1.258.7 | 0.001912 |
M | 82 | I82T | aTc | aCc | 1 | 1 | B.1.301 | 0.005917 |
M | 82 | I82I | atC | atT | 1 | 1 | B.1.311 | 0.000275 |
M | 82 | I82T | aTc | aCc | 1 | 1 | B.1.323 | 0.020833 |
M | 82 | I82T | aTc | aCc | 1 | 1 | B.1.336 | 0.002439 |
M | 82 | I82I | atC | atT | 1 | 1 | B.1.336 | 0.002439 |
M | 82 | I82T | aTc | aCc | 1 | 1 | B.1.355 | 0.011111 |
M | 82 | I82S | aTc | aGc | 1 | 1 | B.1.36 | 0.000146 |
M | 82 | I82T | aTc | aCc | 1 | 1 | B.1.36.10 | 0.004785 |
M | 82 | I82S | aTc | aGc | 1 | 1 | B.1.36.17 | 0.000494 |
M | 82 | I82T | aTc | aCc | 1 | 1 | B.1.36.29 | 0.000517 |
M | 82 | I82T | aTc | aCc | 1 | 1 | B.1.362 | 0.001541 |
M | 82 | I82T | aTc | aCc | 1 | 1 | B.1.366 | 0.004878 |
M | 82 | I82I | atC | atT | 1 | 1 | B.1.371 | 0.001122 |
M | 82 | I82T | aTc | aCc | 1 | 1 | B.1.377 | 0.004566 |
M | 82 | I82T | aTc | aCc | 1 | 1 | B.1.380 | 0.006623 |
M | 82 | I82I | atC | atT | 1 | 1 | B.1.396 | 0.000706 |
M | 82 | I82T | aTc | aCc | 1 | 1 | B.1.400 | 0.000429 |
M | 82 | I82V | Atc | Gtc | 1 | 1 | B.1.409 | 0.000781 |
M | 82 | I82I | atC | atT | 1 | 1 | B.1.413 | 0.004255 |
M | 82 | I82I | atC | atT | 1 | 1 | B.1.416.1 | 0.001563 |
M | 82 | I82T | aTc | aCc | 1 | 1 | B.1.429 | 0.000024 |
M | 82 | I82T | aTc | aCc | 1 | 1 | B.1.436 | 0.001029 |
M | 82 | I82V | Atc | Gtc | 1 | 1 | B.1.451 | 0.008197 |
M | 82 | I82T | aTc | aCc | 1 | 1 | B.1.453 | 0.003236 |
M | 82 | I82I | atC | atT | 1 | 1 | B.1.462 | 0.007246 |
M | 82 | I82I | atC | atT | 1 | 1 | B.1.465 | 0.003802 |
M | 82 | I82T | aTc | aCc | 1 | 1 | B.1.468 | 0.005714 |
M | 82 | I82T | aTc | aCc | 1 | 1 | B.1.470 | 0.001404 |
M | 82 | I82I | atC | atT | 1 | 1 | B.1.474 | 0.001901 |
M | 82 | I82V | Atc | Gtc | 1 | 1 | B.1.526 | 0.000024 |
M | 82 | I82T | aTc | aCc | 1 | 1 | B.1.548 | 0.035714 |
M | 82 | I82T | aTc | aCc | 1 | 1 | B.1.551 | 0.00129 |
M | 82 | I82T | aTc | aCc | 1 | 1 | B.1.560 | 0.00463 |
M | 82 | I82I | atC | atT | 1 | 1 | B.1.560 | 0.00463 |
M | 82 | I82I | atC | atT | 1 | 1 | B.1.564.1 | 0.001577 |
M | 82 | I82del | ATC | --- | 1 | 1 | B.1.577 | 0.000687 |
M | 82 | I82T | aTc | aCc | 1 | 1 | B.1.580 | 0.004065 |
M | 82 | I82T | aTc | aCc | 1 | 1 | B.1.581 | 0.009434 |
M | 82 | I82T | aTc | aCc | 1 | 1 | B.1.582 | 0.000491 |
M | 82 | I82T | aTc | aCc | 1 | 1 | B.1.586 | 0.010989 |
M | 82 | I82I | atC | atT | 1 | 1 | B.1.595 | 0.000261 |
M | 82 | I82T | aTc | aCc | 1 | 1 | B.1.595.1 | 0.005848 |
M | 82 | I82del | ATC | --- | 1 | 1 | B.1.596 | 0.000087 |
M | 82 | I82T | aTc | aCc | 1 | 1 | B.1.599 | 0.00365 |
M | 82 | I82I | atC | atT | 1 | 1 | B.1.609 | 0.000479 |
M | 82 | I82T | aTc | aCc | 1 | 1 | B.1.612 | 0.002653 |
M | 82 | I82del2 | aTC | a-- | 1 | 1 | B.1.617.2 | 0.000004 |
M | 82 | I82del | ATC | --- | 1 | 1 | B.1.617.2 | 0.000004 |
M | 82 | I82T | aTc | aCc | 1 | 1 | B.1.620 | 0.000946 |
M | 82 | I82del | ATC | --- | 1 | 1 | B.1.627 | 0.00202 |
M | 82 | I82T | aTc | aCc | 1 | 1 | B.1.630 | 0.005236 |
M | 82 | I82A | ATc | GCc | 1 | 1 | B.1.632 | 0.006711 |
M | 82 | I82T | aTc | aCc | 1 | 1 | B.1.70 | 0.02439 |
M | 82 | I82L | Atc | Ctc | 1 | 1 | B.23 | 0.002924 |
M | 82 | I82I | atC | atT | 1 | 1 | B.3 | 0.000831 |
M | 82 | I82T | aTc | aCc | 1 | 1 | B.37 | 0.028571 |
M | 82 | I82T | aTc | aCc | 1 | 1 | B.52 | 0.010101 |
M | 82 | I82S | aTc | aGc | 1 | 1 | B.55 | 0.00295 |
M | 82 | I82I | atC | atT | 1 | 1 | B.6 | 0.00091 |
M | 82 | I82T | aTc | aCc | 1 | 1 | C.16 | 0.00106 |
M | 82 | I82I | atC | atT | 1 | 1 | C.35 | 0.000774 |
M | 82 | I82I | atC | atT | 1 | 1 | P.1.1 | 0.000318 |
M | 82 | I82T | aTc | aCc | 1 | 1 | P.1.1 | 0.000318 |
M | 82 | I82del | ATC | --- | 1 | 1 | P.1.15 | 0.000232 |
M | 82 | I82I | atC | atT | 1 | 1 | P.1.17 | 0.000162 |
M | 82 | I82T | aTc | aCc | 1 | 1 | P.1.2 | 0.001156 |
M | 82 | I82I | atC | atT | 1 | 1 | Q.1 | 0.000126 |
M | 82 | I82V | Atc | Gtc | 1 | 1 | W.2 | 0.004831 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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