CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = M : CodonNum = 82

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
M	82	I82T		nonsyn	aTc	aCc	2770324	2769241	0.999609	26766-26768
M	82	I82T		nonsyn	aTC	aCT	2770324	992	0.000358081	26766-26768
M	82	I82T		nonsyn	aTC	aCA	2770324	89	0.0000321262	26766-26768
M	82	I82T		nonsyn	aTC	aCG	2770324	2	0.000000721937	26766-26768
M	82	I82S		nonsyn	aTc	aGc	5017	5014	0.999402	26766-26768
M	82	I82S		nonsyn	aTC	aGT	5017	2	0.000398645	26766-26768
M	82	I82S		nonsyn	ATc	TCc	5017	1	0.000199322	26766-26768
M	82	I82P		nonsyn	ATc	CCc	3289	3289	1	26766-26768
M	82	I82I		syn	atC	atT	1657	1494	0.901629	26766-26768
M	82	I82I		syn	atC	atA	1657	163	0.0983706	26766-26768
M	82	I82V		nonsyn	Atc	Gtc	365	363	0.994521	26766-26768
M	82	I82V		nonsyn	AtC	GtT	365	2	0.00547945	26766-26768
M	82	I82A		nonsyn	ATc	GCc	223	223	1	26766-26768
M	82	I82del		del	ATC	---	86	86	1	26766-26768
M	82	I82L		nonsyn	Atc	Ctc	29	29	1	26766-26768
M	82	I82del1		del	aTc	a-c	12	10	0.833333	26766-26768
M	82	I82del1		del	Atc	-tc	12	2	0.166667	26766-26768
M	82	I82N		nonsyn	aTc	aAc	11	11	1	26766-26768
M	82	I82F		nonsyn	Atc	Ttc	4	4	1	26766-26768
M	82	I82M		nonsyn	atC	atG	3	3	1	26766-26768
M	82	I82del2		del	aTC	a--	3	2	0.666667	26766-26768
M	82	I82del2		del	ATC	G--	3	1	0.333333	26766-26768

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
M	82	I82T	aTc	aCc	2769241	2770324	All	0.52965
M	82	I82T	aTC	aCT	992	2770324	All	0.00019
M	82	I82T	aTC	aCA	89	2770324	All	0.000017
M	82	I82T	aTC	aCG	2	2770324	All	0
M	82	I82T	aTc	aCc	641317	641606	AY.4	0.99816
M	82	I82T	aTC	aCT	276	641606	AY.4	0.00043
M	82	I82T	aTC	aCA	13	641606	AY.4	0.00002
M	82	I82T	aTc	aCc	264950	265011	B.1.617.2	0.997647
M	82	I82T	aTC	aCT	57	265011	B.1.617.2	0.000215
M	82	I82T	aTC	aCA	3	265011	B.1.617.2	0.000011
M	82	I82T	aTC	aCG	1	265011	B.1.617.2	0.000004
M	82	I82T	aTc	aCc	224836	224914	AY.43	0.996128
M	82	I82T	aTC	aCA	41	224914	AY.43	0.000182
M	82	I82T	aTC	aCT	37	224914	AY.43	0.000164
M	82	I82T	aTc	aCc	165407	165432	AY.25	0.994893
M	82	I82T	aTC	aCT	21	165432	AY.25	0.000126
M	82	I82T	aTC	aCA	4	165432	AY.25	0.000024
M	82	I82T	aTc	aCc	163126	163154	AY.44	0.992909
M	82	I82T	aTC	aCT	24	163154	AY.44	0.000146
M	82	I82T	aTC	aCA	4	163154	AY.44	0.000024
M	82	I82T	aTc	aCc	159937	159964	AY.103	0.993058
M	82	I82T	aTC	aCT	26	159964	AY.103	0.000161
M	82	I82T	aTC	aCA	1	159964	AY.103	0.000006
M	82	I82T	aTc	aCc	100477	100497	AY.3	0.999383
M	82	I82T	aTC	aCA	10	100497	AY.3	0.000099
M	82	I82T	aTC	aCT	10	100497	AY.3	0.000099
M	82	I82T	aTc	aCc	63381	63388	AY.29	0.999748
M	82	I82T	aTC	aCT	7	63388	AY.29	0.00011
M	82	I82T	aTc	aCc	48383	48384	AY.5	0.999071
M	82	I82T	aTC	aCT	1	48384	AY.5	0.000021
M	82	I82T	aTc	aCc	45977	45980	AY.4.2	0.99718
M	82	I82T	aTC	aCT	3	45980	AY.4.2	0.000065
M	82	I82T	aTc	aCc	40314	40317	AY.39	0.996219
M	82	I82T	aTC	aCT	3	40317	AY.39	0.000074
M	82	I82T	aTc	aCc	37709	37714	AY.102	0.999814
M	82	I82T	aTC	aCT	5	37714	AY.102	0.000133
M	82	I82T	aTc	aCc	35111	35121	AY.26	0.993998
M	82	I82T	aTC	aCT	10	35121	AY.26	0.000283
M	82	I82T	aTc	aCc	32002	32012	AY.47	0.995428
M	82	I82T	aTC	aCA	9	32012	AY.47	0.00028
M	82	I82T	aTC	aCT	1	32012	AY.47	0.000031
M	82	I82T	aTc	aCc	28173	28174	AY.119	0.994739
M	82	I82T	aTC	aCT	1	28174	AY.119	0.000035
M	82	I82T	aTc	aCc	26870	27121	AY.9.2	0.986924
M	82	I82T	aTC	aCT	251	27121	AY.9.2	0.009219
M	82	I82T	aTc	aCc	26859	26859	AY.120	0.998587
M	82	I82T	aTc	aCc	25569	25579	AY.20	0.993743
M	82	I82T	aTC	aCT	10	25579	AY.20	0.000389
M	82	I82T	aTc	aCc	25205	25205	AY.39.1	0.998455
M	82	I82T	aTc	aCc	24794	24794	AY.42	0.997466
M	82	I82T	aTc	aCc	24300	24301	AY.6	0.999424
M	82	I82T	aTC	aCT	1	24301	AY.6	0.000041
M	82	I82T	aTc	aCc	21680	21724	AY.100	0.997424
M	82	I82T	aTC	aCT	44	21724	AY.100	0.002024
M	82	I82T	aTc	aCc	20522	20535	AY.98.1	0.993898
M	82	I82T	aTC	aCT	13	20535	AY.98.1	0.00063
M	82	I82T	aTc	aCc	17519	17566	AY.75	0.981457
M	82	I82T	aTC	aCT	47	17566	AY.75	0.002633
M	82	I82T	aTc	aCc	15828	15834	AY.118	0.991605
M	82	I82T	aTC	aCT	6	15834	AY.118	0.000376
M	82	I82T	aTc	aCc	15422	15452	AY.27	0.998123
M	82	I82T	aTC	aCT	30	15452	AY.27	0.001942
M	82	I82T	aTc	aCc	14938	14938	AY.33	0.997529
M	82	I82T	aTc	aCc	14772	14778	AY.9	0.998513
M	82	I82T	aTC	aCT	6	14778	AY.9	0.000406
M	82	I82T	aTc	aCc	14134	14138	AY.23	0.985841
M	82	I82T	aTC	aCT	4	14138	AY.23	0.000279
M	82	I82T	aTc	aCc	13785	13785	AY.46.6	0.995379
M	82	I82T	aTc	aCc	12643	12647	AY.98	0.998736
M	82	I82T	aTC	aCT	4	12647	AY.98	0.000316
M	82	I82T	aTc	aCc	11914	11915	AY.9.1	0.997488
M	82	I82T	aTC	aCT	1	11915	AY.9.1	0.000084
M	82	I82T	aTc	aCc	11725	11725	AY.3.1	0.999659
M	82	I82T	aTc	aCc	11357	11361	AY.14	0.99956
M	82	I82T	aTC	aCT	4	11361	AY.14	0.000352
M	82	I82T	aTc	aCc	10799	10801	AY.99.2	0.995208
M	82	I82T	aTC	aCA	2	10801	AY.99.2	0.000184
M	82	I82T	aTc	aCc	10337	10337	AY.54	0.985603
M	82	I82T	aTc	aCc	9982	10010	AY.34	0.967905
M	82	I82T	aTC	aCT	28	10010	AY.34	0.002715
M	82	I82T	aTc	aCc	9710	9710	AY.117	0.820656
M	82	I82T	aTc	aCc	9466	9468	AY.46	0.985221
M	82	I82T	aTC	aCT	2	9468	AY.46	0.000208
M	82	I82T	aTc	aCc	9430	9435	AY.61	0.988055
M	82	I82T	aTC	aCT	5	9435	AY.61	0.000524
M	82	I82T	aTc	aCc	9259	9259	AY.4.5	0.99527
M	82	I82T	aTc	aCc	8873	8873	AY.7.1	1
M	82	I82T	aTc	aCc	8861	8861	AY.110	0.998535
M	82	I82T	aTc	aCc	8786	8787	B.1.525	0.994229
M	82	I82T	aTC	aCT	1	8787	B.1.525	0.000113
M	82	I82T	aTc	aCc	8645	8649	AY.74	0.999769
M	82	I82T	aTC	aCT	4	8649	AY.74	0.000463
M	82	I82T	aTc	aCc	8163	8164	AY.45	0.993307
M	82	I82T	aTC	aCT	1	8164	AY.45	0.000122
M	82	I82T	aTc	aCc	7387	7389	AY.121	0.999594
M	82	I82T	aTC	aCT	2	7389	AY.121	0.000271
M	82	I82T	aTc	aCc	7008	7012	AY.113	0.997864
M	82	I82T	aTC	aCT	4	7012	AY.113	0.00057
M	82	I82T	aTc	aCc	6712	6715	AY.36	0.994813
M	82	I82T	aTC	aCT	3	6715	AY.36	0.000445
M	82	I82T	aTc	aCc	6689	6689	AY.4.2.1	0.996573
M	82	I82T	aTc	aCc	6202	6202	AY.13	0.99839
M	82	I82T	aTc	aCc	6078	6078	AY.46.4	0.999835
M	82	I82T	aTc	aCc	5486	5491	AY.75.1	0.989181
M	82	I82T	aTC	aCT	5	5491	AY.75.1	0.000902
M	82	I82T	aTc	aCc	5441	5441	AY.111	0.99652
M	82	I82T	aTc	aCc	5351	5355	AY.69	0.99888
M	82	I82T	aTC	aCT	4	5355	AY.69	0.000747
M	82	I82T	aTc	aCc	5098	5101	AY.7	0.999216
M	82	I82T	aTC	aCT	3	5101	AY.7	0.000588
M	82	I82T	aTc	aCc	5031	5031	AY.46.5	0.998214
M	82	I82S	aTc	aGc	5014	5017	All	0.000959
M	82	I82S	aTC	aGT	2	5017	All	0
M	82	I82S	ATc	TCc	1	5017	All	0
M	82	I82T	aTc	aCc	4780	4781	AY.70	0.996664
M	82	I82T	aTC	aCT	1	4781	AY.70	0.000209
M	82	I82T	aTc	aCc	4535	4535	AY.29.1	1
M	82	I82S	aTc	aGc	4358	4360	B.1.617.1	0.562032
M	82	I82S	aTC	aGT	2	4360	B.1.617.1	0.000258
M	82	I82T	aTc	aCc	4325	4325	AY.114	0.999538
M	82	I82T	aTc	aCc	4222	4222	AY.35	0.98392
M	82	I82T	aTc	aCc	3662	3662	AY.93	1
M	82	I82T	aTc	aCc	3627	3627	AY.68	0.992883
M	82	I82T	aTc	aCc	3490	3490	AY.5.4	0.965689
M	82	I82T	aTc	aCc	3480	3481	AY.116	0.997993
M	82	I82T	aTC	aCT	1	3481	AY.116	0.000287
M	82	I82T	aTc	aCc	3464	3471	AY.53	0.995975
M	82	I82T	aTC	aCT	7	3471	AY.53	0.002013
M	82	I82T	aTc	aCc	3397	3397	AY.41	0.99853
M	82	I82P	ATc	CCc	3289	3289	All	0.000629
M	82	I82T	aTc	aCc	3283	3284	B.1.1.318	0.990646
M	82	I82T	aTC	aCG	1	3284	B.1.1.318	0.000302
M	82	I82T	aTc	aCc	3275	3276	B.1.575	0.993629
M	82	I82T	aTC	aCT	1	3276	B.1.575	0.000303
M	82	I82T	aTc	aCc	3229	3229	AY.92	0.927607
M	82	I82T	aTc	aCc	3211	3211	AY.116.1	1
M	82	I82T	aTc	aCc	3157	3157	AY.37	0.997788
M	82	I82T	aTc	aCc	3152	3152	AY.12	0.996207
M	82	I82T	aTc	aCc	3102	3103	AY.120.1	0.995827
M	82	I82T	aTC	aCT	1	3103	AY.120.1	0.000321
M	82	I82T	aTc	aCc	2953	2954	AY.5.3	0.996289
M	82	I82T	aTC	aCT	1	2954	AY.5.3	0.000337
M	82	I82T	aTc	aCc	2874	2874	AY.106	0.962492
M	82	I82T	aTc	aCc	2808	2808	AY.2	1
M	82	I82T	aTc	aCc	2632	2632	AY.16	0.999241
M	82	I82T	aTc	aCc	2584	2584	AY.63	0.999613
M	82	I82T	aTc	aCc	2527	2527	AY.1	1
M	82	I82T	aTc	aCc	2524	2524	AY.30	0.998813
M	82	I82T	aTc	aCc	2441	2442	AY.4.4	0.998773
M	82	I82T	aTC	aCT	1	2442	AY.4.4	0.000409
M	82	I82T	aTc	aCc	2396	2396	AY.23.1	1
M	82	I82T	aTc	aCc	2319	2319	AY.24	0.999569
M	82	I82T	aTc	aCc	2316	2316	AY.85	0.989321
M	82	I82T	aTc	aCc	2268	2268	AY.84	0.992126
M	82	I82T	aTc	aCc	2258	2258	AY.94	0.999557
M	82	I82T	aTc	aCc	2147	2147	AY.48	0.998605
M	82	I82T	aTc	aCc	2146	2146	AY.107	1
M	82	I82T	aTc	aCc	2127	2128	AY.16.1	0.99953
M	82	I82T	aTC	aCT	1	2128	AY.16.1	0.00047
M	82	I82T	aTc	aCc	2095	2095	AY.71	0.995249
M	82	I82T	aTc	aCc	2072	2075	AY.67	0.961931
M	82	I82T	aTC	aCT	3	2075	AY.67	0.001393
M	82	I82P	ATc	CCc	2048	2048	AY.4	0.003188
M	82	I82T	aTc	aCc	2014	2014	AY.101	0.987739
M	82	I82T	aTc	aCc	2004	2004	AY.120.2.1	0.998505
M	82	I82T	aTc	aCc	2003	2003	AY.38	1
M	82	I82T	aTc	aCc	1961	1961	AY.34.1	1
M	82	I82T	aTc	aCc	1887	1887	AY.10	1
M	82	I82T	aTc	aCc	1885	1885	AY.59	0.998411
M	82	I82T	aTc	aCc	1877	1878	AY.62	0.817865
M	82	I82T	aTC	aCT	1	1878	AY.62	0.000436
M	82	I82T	aTc	aCc	1856	1856	AY.65	0.989339
M	82	I82T	aTc	aCc	1764	1764	AY.7.2	0.986577
M	82	I82T	aTc	aCc	1739	1740	AY.32	0.925985
M	82	I82T	aTC	aCT	1	1740	AY.32	0.000532
M	82	I82T	aTc	aCc	1740	1740	C.36.3	0.986954
M	82	I82T	aTc	aCc	1691	1691	B.1	0.015489
M	82	I82T	aTc	aCc	1676	1676	AY.64	0.997619
M	82	I82I	atC	atT	1494	1657	All	0.000286
M	82	I82I	atC	atA	163	1657	All	0.000031
M	82	I82T	aTc	aCc	1650	1650	AY.8	1
M	82	I82T	aTc	aCc	1559	1559	B.1.619.1	1
M	82	I82T	aTc	aCc	1555	1555	AY.105	1
M	82	I82T	aTc	aCc	1524	1524	AY.57	1
M	82	I82T	aTc	aCc	1509	1510	AY.46.2	0.958704
M	82	I82T	aTC	aCT	1	1510	AY.46.2	0.000635
M	82	I82T	aTc	aCc	1503	1503	AY.73	1
M	82	I82T	aTc	aCc	1461	1461	AY.90	1
M	82	I82T	aTc	aCc	1380	1380	AY.39.1.1	1
M	82	I82T	aTc	aCc	1367	1367	AY.91	0.998539
M	82	I82T	aTc	aCc	1356	1356	AY.4.1	1
M	82	I82T	aTc	aCc	1351	1351	AY.109	0.99926
M	82	I82T	aTc	aCc	1305	1306	AY.95	0.993151
M	82	I82T	aTC	aCT	1	1306	AY.95	0.000761
M	82	I82T	aTc	aCc	1247	1247	AY.50	0.996803
M	82	I82T	aTc	aCc	1221	1221	AY.52	0.9943
M	82	I82T	aTc	aCc	1215	1215	AZ.2	0.997537
M	82	I82T	aTc	aCc	1205	1205	AY.86	1
M	82	I82T	aTc	aCc	1200	1200	AY.87	0.999167
M	82	I82T	aTc	aCc	1153	1153	AZ.1	1
M	82	I82T	aTc	aCc	1131	1131	AY.88	1
M	82	I82T	aTc	aCc	1127	1127	B.1.619	0.981707
M	82	I82T	aTc	aCc	1100	1100	AY.58	0.998185
M	82	I82T	aTc	aCc	1098	1098	AY.4.3	0.924242
M	82	I82T	aTc	aCc	1095	1095	AY.51	0.995455
M	82	I82T	aTc	aCc	1090	1090	AY.55	1
M	82	I82T	aTc	aCc	1071	1071	AY.46.3	1
M	82	I82T	aTc	aCc	1053	1053	AY.60	0.987805
M	82	I82T	aTc	aCc	1029	1030	AY.40	0.992285
M	82	I82T	aTC	aCA	1	1030	AY.40	0.000964
M	82	I82T	aTc	aCc	947	951	AY.99	0.993704
M	82	I82T	aTC	aCT	4	951	AY.99	0.004197
M	82	I82T	aTc	aCc	932	932	AY.66	0.996791
M	82	I82T	aTc	aCc	907	907	AY.108	1
M	82	I82T	aTc	aCc	887	887	AY.77	1
M	82	I82T	aTc	aCc	886	886	AY.80	1
M	82	I82T	aTc	aCc	876	876	AY.19	0.99886
M	82	I82T	aTc	aCc	840	840	AY.46.1	0.862423
M	82	I82T	aTc	aCc	826	826	AY.79	1
M	82	I82T	aTc	aCc	776	776	AY.120.2	0.997429
M	82	I82T	aTc	aCc	747	747	AY.11	1
M	82	I82T	aTc	aCc	737	737	AY.82	1
M	82	I82T	aTc	aCc	729	729	AY.72	0.991837
M	82	I82T	aTc	aCc	655	655	AZ.3	0.995441
M	82	I82T	aTc	aCc	649	649	AY.39.2	1
M	82	I82T	aTc	aCc	649	649	AY.78	1
M	82	I82T	aTc	aCc	644	644	AY.99.1	1
M	82	I82T	aTc	aCc	623	623	AY.56	1
M	82	I82T	aTc	aCc	616	616	B.1.1.523	0.9625
M	82	I82I	atC	atT	597	604	B.1.1.7	0.000534
M	82	I82I	atC	atA	7	604	B.1.1.7	0.000006
M	82	I82T	aTc	aCc	585	585	AY.97	0.994898
M	82	I82T	aTc	aCc	580	580	AY.83	1
M	82	I82T	aTc	aCc	529	529	AY.28	1
M	82	I82T	aTc	aCc	527	527	AY.21	1
M	82	I82T	aTc	aCc	509	509	B	0.065056
M	82	I82T	aTc	aCc	506	506	AY.9.2.1	1
M	82	I82T	aTc	aCc	503	504	AY.104	0.998016
M	82	I82T	aTC	aCA	1	504	AY.104	0.001984
M	82	I82T	aTc	aCc	502	502	AY.81	1
M	82	I82T	aTc	aCc	478	478	AY.22	1
M	82	I82T	aTc	aCc	473	473	AY.96	0.981328
M	82	I82T	aTc	aCc	449	449	AY.15	0.997778
M	82	I82P	ATc	CCc	423	423	AY.4.2	0.009174
M	82	I82T	aTc	aCc	412	412	B.1.625	0.969412
M	82	I82T	aTc	aCc	406	406	AY.5.2	1
M	82	I82T	aTc	aCc	394	394	B.1.575.1	0.960976
M	82	I82T	aTc	aCc	373	373	B.1.1.7	0.000334
M	82	I82T	aTc	aCc	368	368	C.36.3.1	1
M	82	I82V	Atc	Gtc	363	365	All	0.000069
M	82	I82V	AtC	GtT	2	365	All	0
M	82	I82T	aTc	aCc	309	309	AY.49	0.98722
M	82	I82T	aTc	aCc	298	298	AZ.4	1
M	82	I82T	aTc	aCc	285	285	AZ.5	1
M	82	I82T	aTc	aCc	266	266	AY.5.1	1
M	82	I82T	aTc	aCc	246	246	AY.91.1	1
M	82	I82A	ATc	GCc	223	223	All	0.000043
M	82	I82T	aTc	aCc	218	218	C.1.2	0.92766
M	82	I82T	aTc	aCc	208	208	B.1.575.2	1
M	82	I82T	aTc	aCc	207	207	AY.76	1
M	82	I82T	aTc	aCc	204	204	AY.89	1
M	82	I82P	ATc	CCc	193	193	B.1.617.2	0.000727
M	82	I82V	Atc	Gtc	192	192	C.37	0.022284
M	82	I82T	aTc	aCc	190	190	AY.115	0.989583
M	82	I82S	aTc	aGc	185	185	A.29	0.984043
M	82	I82I	atC	atT	179	179	B.1.1.205	0.665428
M	82	I82S	aTc	aGc	173	173	B.1.626	0.988571
M	82	I82P	ATc	CCc	152	152	AY.43	0.000673
M	82	I82T	aTc	aCc	151	152	B.1.1	0.002739
M	82	I82T	aTC	aCT	1	152	B.1.1	0.000018
M	82	I82T	aTc	aCc	148	148	B.1.632	0.993289
M	82	I82T	aTc	aCc	142	142	B.1.1.528	0.682692
M	82	I82I	atC	atA	126	138	R.1	0.011341
M	82	I82I	atC	atT	12	138	R.1	0.00108
M	82	I82A	ATc	GCc	131	131	AY.103	0.000813
M	82	I82T	aTc	aCc	128	128	B.1.415.1	0.969697
M	82	I82T	aTc	aCc	123	123	AZ.2.1	1
M	82	I82T	aTc	aCc	122	122	AY.17	1
M	82	I82T	aTc	aCc	119	119	AZ.6	1
M	82	I82T	aTc	aCc	119	119	C.38	0.959677
M	82	I82T	aTc	aCc	99	99	AY.18	1
M	82	I82del	ATC	---	86	86	All	0.000016
M	82	I82P	ATc	CCc	85	85	AY.5	0.001755
M	82	I82S	aTc	aGc	78	78	B.1	0.000714
M	82	I82I	atC	atT	71	71	AP.1	0.106607
M	82	I82S	aTc	aGc	70	70	B.1.629	0.933333
M	82	I82P	ATc	CCc	66	66	AY.4.2.1	0.009833
M	82	I82P	ATc	CCc	65	65	AY.120	0.002417
M	82	I82S	aTc	aGc	62	62	B.1.1.7	0.000056
M	82	I82I	atC	atT	58	60	B.1.1	0.001052
M	82	I82I	atC	atA	2	60	B.1.1	0.000036
M	82	I82P	ATc	CCc	59	59	AY.6	0.002427
M	82	I82I	atC	atT	59	59	B.1	0.00054
M	82	I82del	ATC	---	57	57	B.1.177.21	0.004359
M	82	I82T	aTc	aCc	54	54	AY.31	1
M	82	I82T	aTc	aCc	53	53	B.1.596	0.004618
M	82	I82P	ATc	CCc	43	43	AY.111	0.007875
M	82	I82T	aTc	aCc	40	40	B.1.1.294	0.050633
M	82	I82T	aTc	aCc	40	40	B.1.576	0.036265
M	82	I82T	aTc	aCc	40	40	P.1.12	0.019361
M	82	I82I	atC	atT	24	39	B.1.2	0.000211
M	82	I82I	atC	atA	15	39	B.1.2	0.000132
M	82	I82T	aTc	aCc	38	38	A	0.014706
M	82	I82T	aTc	aCc	38	38	B.1.2	0.000335
M	82	I82I	atC	atT	35	37	P.1	0.000551
M	82	I82I	atC	atA	2	37	P.1	0.000032
M	82	I82I	atC	atT	35	35	B.1.258.17	0.003639
M	82	I82I	atC	atT	35	35	Q.8	0.005772
M	82	I82T	aTc	aCc	34	34	P.1	0.000536
M	82	I82I	atC	atT	33	33	B.1.177	0.000435
M	82	I82V	Atc	Gtc	31	31	B.1	0.000284
M	82	I82V	Atc	Gtc	31	31	P.1.15	0.007203
M	82	I82I	atC	atT	31	31	Q.3	0.004496
M	82	I82T	aTc	aCc	30	30	B.1.617.1	0.003869
M	82	I82L	Atc	Ctc	29	29	All	0.000006
M	82	I82S	aTc	aGc	29	29	B.1.160	0.000904
M	82	I82T	aTc	aCc	28	29	C.36	0.025501
M	82	I82T	aTC	aCT	1	29	C.36	0.000911
M	82	I82V	Atc	Gtc	29	29	R.1	0.00261
M	82	I82L	Atc	Ctc	28	28	B.1.1.7	0.000025
M	82	I82I	atC	atT	28	28	B.1.160	0.000873
M	82	I82T	aTc	aCc	28	28	B.1.427	0.001414
M	82	I82I	atC	atT	25	25	B.1.1.519	0.000993
M	82	I82A	ATc	GCc	25	25	B.1.617.2	0.000094
M	82	I82T	aTc	aCc	24	24	B.1.214.2	0.014388
M	82	I82P	ATc	CCc	23	23	AY.46.5	0.004563
M	82	I82T	aTc	aCc	23	23	B.1.595	0.006002
M	82	I82T	aTc	aCc	21	21	B.1.623	0.011266
M	82	I82T	aTc	aCc	21	21	C.37	0.002437
M	82	I82I	atC	atT	20	21	D.2	0.001501
M	82	I82I	atC	atA	1	21	D.2	0.000075
M	82	I82T	aTc	aCc	20	20	B.1.395	0.140845
M	82	I82T	aTc	aCc	19	19	B.1.177	0.00025
M	82	I82V	Atc	Gtc	19	19	B.1.2	0.000167
M	82	I82P	ATc	CCc	17	17	AY.98	0.001343
M	82	I82T	aTc	aCc	17	17	B.1.633	0.708333
M	82	I82T	aTc	aCc	16	16	B.1.177.73	0.00906
M	82	I82I	atC	atT	16	16	B.1.221	0.001137
M	82	I82T	aTc	aCc	15	15	B.1.1.526	0.053191
M	82	I82T	aTc	aCc	15	15	B.1.351	0.000446
M	82	I82I	atC	atT	15	15	B.1.36.29	0.00776
M	82	I82I	atC	atT	14	14	B.1.1.28	0.004357
M	82	I82I	atC	atT	12	14	B.1.400	0.005148
M	82	I82I	atC	atA	2	14	B.1.400	0.000858
M	82	I82P	ATc	CCc	13	13	AY.34	0.001261
M	82	I82del1	aTc	a-c	10	12	All	0.000002
M	82	I82del1	Atc	-tc	2	12	All	0
M	82	I82P	ATc	CCc	12	12	AY.3	0.000119
M	82	I82P	ATc	CCc	12	12	AY.36	0.001779
M	82	I82V	Atc	Gtc	12	12	B.1.1.7	0.000011
M	82	I82del	ATC	---	12	12	B.1.1.7	0.000011
M	82	I82N	aTc	aAc	11	11	All	0.000002
M	82	I82S	aTc	aGc	11	11	B.1.1	0.0002
M	82	I82I	atC	atT	11	11	B.1.469	0.039711
M	82	I82T	aTc	aCc	11	11	Q.4	0.005002
M	82	I82A	ATc	GCc	10	10	AY.9	0.000676
M	82	I82T	aTc	aCc	10	10	B.1.375	0.008197
M	82	I82V	Atc	Gtc	10	10	B.1.497	0.003148
M	82	I82A	ATc	GCc	9	9	AY.29	0.000142
M	82	I82T	aTc	aCc	9	9	B.1.399	0.017408
M	82	I82T	aTc	aCc	9	9	B.1.621	0.000797
M	82	I82I	atC	atT	9	9	P.1.15	0.002091
M	82	I82A	ATc	GCc	8	8	AY.4	0.000012
M	82	I82I	atC	atT	8	8	B.1.1.63	0.003086
M	82	I82S	aTc	aGc	8	8	P.1	0.000126
M	82	I82T	aTc	aCc	7	7	A.30	1
M	82	I82A	ATc	GCc	7	7	AY.44	0.000043
M	82	I82P	ATc	CCc	7	7	AY.9.2	0.000257
M	82	I82T	aTc	aCc	7	7	B.1.157	0.020896
M	82	I82I	atC	atT	7	7	B.1.427	0.000353
M	82	I82I	atC	atT	7	7	B.1.526	0.000165
M	82	I82T	aTc	aCc	7	7	B.1.628	0.002467
M	82	I82S	aTc	aGc	6	6	A	0.002322
M	82	I82P	ATc	CCc	6	6	AY.39	0.000148
M	82	I82P	ATc	CCc	6	6	AY.42	0.000241
M	82	I82P	ATc	CCc	6	6	AY.9	0.000406
M	82	I82S	aTc	aGc	6	6	B	0.000767
M	82	I82I	atC	atT	6	6	B.1.1.207	0.007092
M	82	I82T	aTc	aCc	6	6	B.1.1.34	0.078947
M	82	I82T	aTc	aCc	6	6	B.1.128	0.003812
M	82	I82V	Atc	Gtc	6	6	B.1.177.35	0.004147
M	82	I82T	aTc	aCc	6	6	B.1.214	0.021978
M	82	I82I	atC	atT	6	6	B.1.234	0.000792
M	82	I82T	aTc	aCc	6	6	B.1.466.2	0.002347
M	82	I82I	atC	atT	4	6	B.1.596	0.000349
M	82	I82I	atC	atA	2	6	B.1.596	0.000174
M	82	I82I	atC	atT	6	6	C.37	0.000696
M	82	I82A	ATc	GCc	5	5	AY.25	0.00003
M	82	I82P	ATc	CCc	5	5	AY.25	0.00003
M	82	I82A	ATc	GCc	5	5	AY.92	0.001436
M	82	I82T	aTc	aCc	5	5	B.1.131	0.04386
M	82	I82T	aTc	aCc	5	5	B.1.240	0.001078
M	82	I82I	atC	atT	5	5	B.1.243	0.000348
M	82	I82I	atC	atT	5	5	B.1.258	0.000333
M	82	I82I	atC	atT	5	5	B.1.351	0.000149
M	82	I82T	aTc	aCc	5	5	B.1.604	0.086207
M	82	I82I	atC	atT	5	5	B.1.621	0.000443
M	82	I82T	aTc	aCc	5	5	B.1.637	0.000365
M	82	I82V	Atc	Gtc	5	5	P.1	0.000079
M	82	I82del	ATC	---	4	4		0.222222
M	82	I82I	atC	atT	4	4	A.27	0.006623
M	82	I82F	Atc	Ttc	4	4	All	0.000001
M	82	I82P	ATc	CCc	4	4	AY.4.1	0.00295
M	82	I82P	ATc	CCc	4	4	AY.98.1	0.000194
M	82	I82V	Atc	Gtc	4	4	B.1.1.220	0.007435
M	82	I82T	aTc	aCc	4	4	B.1.160	0.000125
M	82	I82I	atC	atT	4	4	B.1.177.23	0.012945
M	82	I82I	atC	atT	4	4	B.1.177.44	0.002076
M	82	I82T	aTc	aCc	4	4	B.1.177.7	0.000659
M	82	I82I	atC	atT	4	4	B.1.258.22	0.010667
M	82	I82I	atC	atT	4	4	B.1.429	0.000094
M	82	I82T	aTc	aCc	4	4	B.1.609	0.001918
M	82	I82T	aTc	aCc	4	4	B.1.629	0.053333
M	82	I82T	aTc	aCc	4	4	B.1.81	0.085106
M	82	I82T	aTc	aCc	4	4	B.55	0.011799
M	82	I82T	aTc	aCc	3	3		0.166667
M	82	I82T	aTc	aCc	3	3	A.2.5	0.001497
M	82	I82M	atC	atG	3	3	All	0.000001
M	82	I82del2	aTC	a--	2	3	All	0
M	82	I82del2	ATC	G--	1	3	All	0
M	82	I82A	ATc	GCc	3	3	AY.4.2	0.000065
M	82	I82P	ATc	CCc	3	3	AY.4.5	0.000322
M	82	I82P	ATc	CCc	3	3	AY.75	0.000168
M	82	I82P	ATc	CCc	3	3	AY.85	0.001282
M	82	I82P	ATc	CCc	3	3	AY.87	0.002498
M	82	I82I	atC	atT	3	3	B.1.1.301	0.003538
M	82	I82T	aTc	aCc	3	3	B.1.1.372	0.002066
M	82	I82I	atC	atT	3	3	B.1.1.39	0.001529
M	82	I82M	atC	atG	3	3	B.1.1.519	0.000119
M	82	I82S	aTc	aGc	3	3	B.1.1.523	0.004687
M	82	I82I	atC	atT	3	3	B.1.177.40	0.015464
M	82	I82I	atC	atT	3	3	B.1.177.60	0.000655
M	82	I82V	Atc	Gtc	3	3	B.1.240	0.000647
M	82	I82T	aTc	aCc	3	3	B.1.243	0.000209
M	82	I82I	atC	atT	3	3	B.1.36.31	0.005254
M	82	I82V	Atc	Gtc	3	3	B.1.416.1	0.004687
M	82	I82T	aTc	aCc	3	3	B.1.462	0.021739
M	82	I82T	aTc	aCc	3	3	B.1.474	0.005703
M	82	I82T	aTc	aCc	3	3	B.1.517	0.001281
M	82	I82T	aTc	aCc	3	3	B.1.526	0.000071
M	82	I82T	aTc	aCc	3	3	B.1.530	0.021429
M	82	I82T	aTc	aCc	3	3	B.1.538	0.024194
M	82	I82I	atC	atT	3	3	B.1.617.1	0.000387
M	82	I82del1	aTc	a-c	3	3	B.1.617.1	0.000387
M	82	I82S	aTc	aGc	3	3	B.1.617.2	0.000011
M	82	I82del1	aTc	a-c	2	3	B.1.617.2	0.000008
M	82	I82del1	Atc	-tc	1	3	B.1.617.2	0.000004
M	82	I82T	aTc	aCc	3	3	B.1.638	0.157895
M	82	I82T	aTc	aCc	3	3	B.40	0.001093
M	82	I82V	Atc	Gtc	3	3	C.37.1	0.007853
M	82	I82I	atC	atT	3	3	P.1.14	0.000143
M	82	I82T	aTc	aCc	3	3	P.1.17	0.000485
M	82	I82T	aTc	aCc	3	3	Q.7	0.003333
M	82	I82V	AtC	GtT	2	2		0.111111
M	82	I82I	atC	atT	2	2		0.111111
M	82	I82I	atC	atT	1	2	AE.8	0.000489
M	82	I82I	atC	atA	1	2	AE.8	0.000489
M	82	I82T	aTc	aCc	2	2	AU.2	0.004843
M	82	I82T	aTc	aCc	2	2	AU.3	0.004219
M	82	I82A	ATc	GCc	2	2	AY.100	0.000092
M	82	I82A	ATc	GCc	2	2	AY.102	0.000053
M	82	I82P	ATc	CCc	2	2	AY.102	0.000053
M	82	I82P	ATc	CCc	2	2	AY.109	0.001479
M	82	I82S	aTc	aGc	2	2	AY.117	0.000169
M	82	I82del1	aTc	a-c	2	2	AY.16	0.000759
M	82	I82A	ATc	GCc	2	2	AY.20	0.000078
M	82	I82P	ATc	CCc	2	2	AY.33	0.000134
M	82	I82N	aTc	aAc	2	2	AY.4	0.000003
M	82	I82A	ATc	GCc	2	2	AY.43	0.000009
M	82	I82N	aTc	aAc	2	2	AY.44	0.000012
M	82	I82P	ATc	CCc	2	2	AY.46.6	0.000144
M	82	I82A	ATc	GCc	2	2	AY.5	0.000041
M	82	I82P	ATc	CCc	2	2	AY.7	0.000392
M	82	I82del	ATC	---	2	2	AY.75.1	0.000361
M	82	I82A	ATc	GCc	2	2	AY.9.1	0.000167
M	82	I82P	ATc	CCc	2	2	AY.9.1	0.000167
M	82	I82P	ATc	CCc	2	2	AY.90	0.001369
M	82	I82P	ATc	CCc	2	2	AY.91	0.001461
M	82	I82del1	aTc	a-c	2	2	B.1	0.000018
M	82	I82V	Atc	Gtc	2	2	B.1.1	0.000036
M	82	I82del1	aTc	a-c	1	2	B.1.1	0.000018
M	82	I82del1	Atc	-tc	1	2	B.1.1	0.000018
M	82	I82T	aTc	aCc	2	2	B.1.1.10	0.00223
M	82	I82I	atC	atT	2	2	B.1.1.174	0.006757
M	82	I82I	atC	atA	1	2	B.1.1.192	0.002309
M	82	I82I	atC	atT	1	2	B.1.1.192	0.002309
M	82	I82I	atC	atT	2	2	B.1.1.208	0.02439
M	82	I82I	atC	atT	2	2	B.1.1.216	0.001781
M	82	I82I	atC	atT	2	2	B.1.1.265	0.006309
M	82	I82T	aTc	aCc	2	2	B.1.1.291	0.001485
M	82	I82I	atC	atT	2	2	B.1.1.37	0.000386
M	82	I82T	aTc	aCc	2	2	B.1.143	0.042553
M	82	I82N	aTc	aAc	2	2	B.1.160	0.000062
M	82	I82I	atC	atA	2	2	B.1.177.42	0.001789
M	82	I82I	atC	atT	2	2	B.1.177.57	0.000562
M	82	I82T	aTc	aCc	2	2	B.1.177.86	0.000367
M	82	I82T	aTc	aCc	2	2	B.1.208	0.08
M	82	I82T	aTc	aCc	2	2	B.1.221	0.000142
M	82	I82T	aTc	aCc	2	2	B.1.258.3	0.00335
M	82	I82T	aTc	aCc	2	2	B.1.324	0.00321
M	82	I82S	aTc	aGc	2	2	B.1.351	0.000059
M	82	I82T	aTc	aCc	2	2	B.1.367	0.001585
M	82	I82S	aTc	aGc	2	2	B.1.369	0.00057
M	82	I82T	aTc	aCc	2	2	B.1.369	0.00057
M	82	I82T	aTc	aCc	2	2	B.1.378	0.013699
M	82	I82I	atC	atT	2	2	B.1.389	0.002004
M	82	I82T	aTc	aCc	2	2	B.1.397	0.009709
M	82	I82T	aTc	aCc	2	2	B.1.432	0.022472
M	82	I82T	aTc	aCc	2	2	B.1.433	0.00639
M	82	I82T	aTc	aCc	2	2	B.1.448	0.005249
M	82	I82I	atC	atT	2	2	B.1.466.2	0.000782
M	82	I82T	aTc	aCc	2	2	B.1.485	0.029851
M	82	I82V	Atc	Gtc	2	2	B.1.517	0.000854
M	82	I82S	aTc	aGc	2	2	B.1.596	0.000174
M	82	I82T	aTc	aCc	2	2	B.1.600	0.011696
M	82	I82S	aTc	aGc	2	2	B.1.615	0.08
M	82	I82I	atC	atT	2	2	B.1.620	0.001892
M	82	I82S	aTc	aGc	2	2	B.1.638	0.105263
M	82	I82I	atC	atT	2	2	C.14	0.008658
M	82	I82T	aTc	aCc	2	2	C.37.1	0.005236
M	82	I82I	atC	atT	2	2	L.2	0.022727
M	82	I82T	aTc	aCc	2	2	P.1.13	0.001797
M	82	I82T	aTc	aCc	2	2	P.1.14	0.000096
M	82	I82I	atC	atT	2	2	P.1.4	0.001953
M	82	I82T	aTc	aCc	2	2	P.1.7	0.000639
M	82	I82T	aTc	aCc	1	1	A.1	0.000282
M	82	I82T	aTc	aCc	1	1	A.2	0.000662
M	82	I82T	aTc	aCc	1	1	A.23	0.010526
M	82	I82T	aTc	aCc	1	1	A.23.1	0.000704
M	82	I82I	atC	atT	1	1	A.23.1	0.000704
M	82	I82T	aTc	aCc	1	1	A.25	0.018182
M	82	I82S	aTc	aGc	1	1	A.27	0.001656
M	82	I82I	atC	atT	1	1	A.3	0.002096
M	82	I82I	atC	atT	1	1	AD.2	0.000219
M	82	I82N	aTc	aAc	1	1	AY.103	0.000006
M	82	I82I	atC	atA	1	1	AY.117	0.000085
M	82	I82del	ATC	---	1	1	AY.120	0.000037
M	82	I82F	Atc	Ttc	1	1	AY.120.1	0.000321
M	82	I82P	ATc	CCc	1	1	AY.120.1	0.000321
M	82	I82A	ATc	GCc	1	1	AY.14	0.000088
M	82	I82A	ATc	GCc	1	1	AY.3	0.00001
M	82	I82N	aTc	aAc	1	1	AY.33	0.000067
M	82	I82P	ATc	CCc	1	1	AY.39.1	0.00004
M	82	I82P	ATc	CCc	1	1	AY.4.4	0.000409
M	82	I82P	ATc	CCc	1	1	AY.41	0.000294
M	82	I82S	ATc	TCc	1	1	AY.43	0.000004
M	82	I82N	aTc	aAc	1	1	AY.43	0.000004
M	82	I82P	ATc	CCc	1	1	AY.45	0.000122
M	82	I82A	ATc	GCc	1	1	AY.45	0.000122
M	82	I82P	ATc	CCc	1	1	AY.46	0.000104
M	82	I82P	ATc	CCc	1	1	AY.46.3	0.000934
M	82	I82P	ATc	CCc	1	1	AY.46.4	0.000165
M	82	I82P	ATc	CCc	1	1	AY.47	0.000031
M	82	I82A	ATc	GCc	1	1	AY.61	0.000105
M	82	I82S	aTc	aGc	1	1	AY.75	0.000056
M	82	I82A	ATc	GCc	1	1	AY.75	0.000056
M	82	I82P	ATc	CCc	1	1	AY.79	0.001211
M	82	I82A	ATc	GCc	1	1	AY.84	0.000437
M	82	I82P	ATc	CCc	1	1	AY.86	0.00083
M	82	I82P	ATc	CCc	1	1	AY.94	0.000443
M	82	I82N	aTc	aAc	1	1	AY.98	0.000079
M	82	I82N	aTc	aAc	1	1	AY.98.1	0.000048
M	82	I82del	ATC	---	1	1	B.1	0.000009
M	82	I82A	ATc	GCc	1	1	B.1	0.000009
M	82	I82F	Atc	Ttc	1	1	B.1.1	0.000018
M	82	I82del2	ATC	G--	1	1	B.1.1	0.000018
M	82	I82I	atC	atT	1	1	B.1.1.1	0.000327
M	82	I82I	atC	atT	1	1	B.1.1.153	0.001095
M	82	I82T	aTc	aCc	1	1	B.1.1.210	0.005714
M	82	I82I	atC	atA	1	1	B.1.1.214	0.000055
M	82	I82V	Atc	Gtc	1	1	B.1.1.216	0.00089
M	82	I82I	atC	atT	1	1	B.1.1.27	0.00565
M	82	I82V	Atc	Gtc	1	1	B.1.1.28	0.000311
M	82	I82V	Atc	Gtc	1	1	B.1.1.284	0.000107
M	82	I82S	aTc	aGc	1	1	B.1.1.294	0.001266
M	82	I82I	atC	atT	1	1	B.1.1.302	0.002075
M	82	I82I	atC	atT	1	1	B.1.1.305	0.003861
M	82	I82I	atC	atT	1	1	B.1.1.311	0.000358
M	82	I82I	atC	atT	1	1	B.1.1.317	0.000412
M	82	I82I	atC	atT	1	1	B.1.1.319	0.017544
M	82	I82T	aTc	aCc	1	1	B.1.1.33	0.000421
M	82	I82I	atC	atT	1	1	B.1.1.335	0.012987
M	82	I82I	atC	atT	1	1	B.1.1.369	0.000446
M	82	I82del	ATC	---	1	1	B.1.1.372	0.000689
M	82	I82I	atC	atT	1	1	B.1.1.398	0.003226
M	82	I82del2	aTC	a--	1	1	B.1.1.7	0.000001
M	82	I82F	Atc	Ttc	1	1	B.1.1.7	0.000001
M	82	I82I	atC	atT	1	1	B.1.117	0.0125
M	82	I82T	aTc	aCc	1	1	B.1.126	0.001276
M	82	I82T	aTc	aCc	1	1	B.1.139	0.000733
M	82	I82T	aTc	aCc	1	1	B.1.142	0.002899
M	82	I82S	aTc	aGc	1	1	B.1.157	0.002985
M	82	I82T	aTc	aCc	1	1	B.1.158	0.02381
M	82	I82del	ATC	---	1	1	B.1.160	0.000031
M	82	I82V	Atc	Gtc	1	1	B.1.160.26	0.002421
M	82	I82del	ATC	---	1	1	B.1.161	0.017241
M	82	I82V	Atc	Gtc	1	1	B.1.177.17	0.000821
M	82	I82I	atC	atT	1	1	B.1.177.19	0.001431
M	82	I82V	Atc	Gtc	1	1	B.1.177.44	0.000519
M	82	I82I	atC	atT	1	1	B.1.177.46	0.000918
M	82	I82S	aTc	aGc	1	1	B.1.177.7	0.000165
M	82	I82S	aTc	aGc	1	1	B.1.177.73	0.000566
M	82	I82I	atC	atT	1	1	B.1.177.77	0.000726
M	82	I82I	atC	atT	1	1	B.1.177.8	0.000752
M	82	I82S	aTc	aGc	1	1	B.1.2	0.000009
M	82	I82F	Atc	Ttc	1	1	B.1.221	0.000071
M	82	I82T	aTc	aCc	1	1	B.1.232	0.000537
M	82	I82T	aTc	aCc	1	1	B.1.234	0.000132
M	82	I82I	atC	atT	1	1	B.1.235	0.002519
M	82	I82I	atC	atT	1	1	B.1.240	0.000216
M	82	I82V	Atc	Gtc	1	1	B.1.243	0.00007
M	82	I82T	aTc	aCc	1	1	B.1.258.11	0.000396
M	82	I82del	ATC	---	1	1	B.1.258.11	0.000396
M	82	I82I	atC	atT	1	1	B.1.258.14	0.00098
M	82	I82T	aTc	aCc	1	1	B.1.258.17	0.000104
M	82	I82I	atC	atT	1	1	B.1.258.7	0.001912
M	82	I82T	aTc	aCc	1	1	B.1.301	0.005917
M	82	I82I	atC	atT	1	1	B.1.311	0.000275
M	82	I82T	aTc	aCc	1	1	B.1.323	0.020833
M	82	I82T	aTc	aCc	1	1	B.1.336	0.002439
M	82	I82I	atC	atT	1	1	B.1.336	0.002439
M	82	I82T	aTc	aCc	1	1	B.1.355	0.011111
M	82	I82S	aTc	aGc	1	1	B.1.36	0.000146
M	82	I82T	aTc	aCc	1	1	B.1.36.10	0.004785
M	82	I82S	aTc	aGc	1	1	B.1.36.17	0.000494
M	82	I82T	aTc	aCc	1	1	B.1.36.29	0.000517
M	82	I82T	aTc	aCc	1	1	B.1.362	0.001541
M	82	I82T	aTc	aCc	1	1	B.1.366	0.004878
M	82	I82I	atC	atT	1	1	B.1.371	0.001122
M	82	I82T	aTc	aCc	1	1	B.1.377	0.004566
M	82	I82T	aTc	aCc	1	1	B.1.380	0.006623
M	82	I82I	atC	atT	1	1	B.1.396	0.000706
M	82	I82T	aTc	aCc	1	1	B.1.400	0.000429
M	82	I82V	Atc	Gtc	1	1	B.1.409	0.000781
M	82	I82I	atC	atT	1	1	B.1.413	0.004255
M	82	I82I	atC	atT	1	1	B.1.416.1	0.001563
M	82	I82T	aTc	aCc	1	1	B.1.429	0.000024
M	82	I82T	aTc	aCc	1	1	B.1.436	0.001029
M	82	I82V	Atc	Gtc	1	1	B.1.451	0.008197
M	82	I82T	aTc	aCc	1	1	B.1.453	0.003236
M	82	I82I	atC	atT	1	1	B.1.462	0.007246
M	82	I82I	atC	atT	1	1	B.1.465	0.003802
M	82	I82T	aTc	aCc	1	1	B.1.468	0.005714
M	82	I82T	aTc	aCc	1	1	B.1.470	0.001404
M	82	I82I	atC	atT	1	1	B.1.474	0.001901
M	82	I82V	Atc	Gtc	1	1	B.1.526	0.000024
M	82	I82T	aTc	aCc	1	1	B.1.548	0.035714
M	82	I82T	aTc	aCc	1	1	B.1.551	0.00129
M	82	I82T	aTc	aCc	1	1	B.1.560	0.00463
M	82	I82I	atC	atT	1	1	B.1.560	0.00463
M	82	I82I	atC	atT	1	1	B.1.564.1	0.001577
M	82	I82del	ATC	---	1	1	B.1.577	0.000687
M	82	I82T	aTc	aCc	1	1	B.1.580	0.004065
M	82	I82T	aTc	aCc	1	1	B.1.581	0.009434
M	82	I82T	aTc	aCc	1	1	B.1.582	0.000491
M	82	I82T	aTc	aCc	1	1	B.1.586	0.010989
M	82	I82I	atC	atT	1	1	B.1.595	0.000261
M	82	I82T	aTc	aCc	1	1	B.1.595.1	0.005848
M	82	I82del	ATC	---	1	1	B.1.596	0.000087
M	82	I82T	aTc	aCc	1	1	B.1.599	0.00365
M	82	I82I	atC	atT	1	1	B.1.609	0.000479
M	82	I82T	aTc	aCc	1	1	B.1.612	0.002653
M	82	I82del2	aTC	a--	1	1	B.1.617.2	0.000004
M	82	I82del	ATC	---	1	1	B.1.617.2	0.000004
M	82	I82T	aTc	aCc	1	1	B.1.620	0.000946
M	82	I82del	ATC	---	1	1	B.1.627	0.00202
M	82	I82T	aTc	aCc	1	1	B.1.630	0.005236
M	82	I82A	ATc	GCc	1	1	B.1.632	0.006711
M	82	I82T	aTc	aCc	1	1	B.1.70	0.02439
M	82	I82L	Atc	Ctc	1	1	B.23	0.002924
M	82	I82I	atC	atT	1	1	B.3	0.000831
M	82	I82T	aTc	aCc	1	1	B.37	0.028571
M	82	I82T	aTc	aCc	1	1	B.52	0.010101
M	82	I82S	aTc	aGc	1	1	B.55	0.00295
M	82	I82I	atC	atT	1	1	B.6	0.00091
M	82	I82T	aTc	aCc	1	1	C.16	0.00106
M	82	I82I	atC	atT	1	1	C.35	0.000774
M	82	I82I	atC	atT	1	1	P.1.1	0.000318
M	82	I82T	aTc	aCc	1	1	P.1.1	0.000318
M	82	I82del	ATC	---	1	1	P.1.15	0.000232
M	82	I82I	atC	atT	1	1	P.1.17	0.000162
M	82	I82T	aTc	aCc	1	1	P.1.2	0.001156
M	82	I82I	atC	atT	1	1	Q.1	0.000126
M	82	I82V	Atc	Gtc	1	1	W.2	0.004831

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.