CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
M | 81 | A81S | nonsyn | Gct | Tct | 21721 | 21721 | 1 | 26763-26765 | |
M | 81 | A81A | syn | gcT | gcC | 678 | 628 | 0.926254 | 26763-26765 | |
M | 81 | A81A | syn | gcT | gcA | 678 | 30 | 0.0442478 | 26763-26765 | |
M | 81 | A81A | syn | gcT | gcG | 678 | 20 | 0.0294985 | 26763-26765 | |
M | 81 | A81del | del | GCT | --- | 87 | 87 | 1 | 26763-26765 | |
M | 81 | A81V | nonsyn | gCt | gTt | 10 | 10 | 1 | 26763-26765 | |
M | 81 | A81G | nonsyn | gCt | gGt | 6 | 6 | 1 | 26763-26765 | |
M | 81 | A81P | nonsyn | Gct | Cct | 5 | 5 | 1 | 26763-26765 | |
M | 81 | A81D | nonsyn | gCt | gAt | 3 | 3 | 1 | 26763-26765 | |
M | 81 | A81T | nonsyn | Gct | Act | 2 | 2 | 1 | 26763-26765 | |
M | 81 | A81del1 | del | gcT | gc- | 2 | 1 | 0.5 | 26763-26765 | |
M | 81 | A81del1 | del | Gct | -ct | 2 | 1 | 0.5 | 26763-26765 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
M | 81 | A81S | Gct | Tct | 21721 | 21721 | All | 0.004154 |
M | 81 | A81S | Gct | Tct | 15050 | 15050 | AY.27 | 0.974047 |
M | 81 | A81S | Gct | Tct | 3792 | 3792 | AY.4 | 0.005902 |
M | 81 | A81S | Gct | Tct | 1458 | 1458 | B.1.1.7 | 0.001305 |
M | 81 | A81A | gcT | gcC | 628 | 678 | All | 0.00012 |
M | 81 | A81A | gcT | gcA | 30 | 678 | All | 0.000006 |
M | 81 | A81A | gcT | gcG | 20 | 678 | All | 0.000004 |
M | 81 | A81S | Gct | Tct | 249 | 249 | B.1.617.2 | 0.000938 |
M | 81 | A81A | gcT | gcC | 162 | 162 | AY.29 | 0.002555 |
M | 81 | A81S | Gct | Tct | 132 | 132 | AY.4.2 | 0.002863 |
M | 81 | A81S | Gct | Tct | 110 | 110 | B.1.2 | 0.000969 |
M | 81 | A81A | gcT | gcC | 105 | 105 | AY.4 | 0.000163 |
M | 81 | A81S | Gct | Tct | 98 | 98 | AY.43 | 0.000434 |
M | 81 | A81del | GCT | --- | 87 | 87 | All | 0.000017 |
M | 81 | A81S | Gct | Tct | 67 | 67 | AY.37 | 0.021176 |
M | 81 | A81A | gcT | gcC | 60 | 61 | AY.3 | 0.000597 |
M | 81 | A81A | gcT | gcA | 1 | 61 | AY.3 | 0.00001 |
M | 81 | A81del | GCT | --- | 57 | 57 | B.1.177.21 | 0.004359 |
M | 81 | A81S | Gct | Tct | 51 | 51 | AY.44 | 0.00031 |
M | 81 | A81A | gcT | gcC | 50 | 50 | B.1.617.2 | 0.000188 |
M | 81 | A81A | gcT | gcC | 44 | 45 | AY.103 | 0.000273 |
M | 81 | A81A | gcT | gcA | 1 | 45 | AY.103 | 0.000006 |
M | 81 | A81A | gcT | gcA | 21 | 42 | AY.43 | 0.000093 |
M | 81 | A81A | gcT | gcC | 21 | 42 | AY.43 | 0.000093 |
M | 81 | A81S | Gct | Tct | 42 | 42 | P.1 | 0.000662 |
M | 81 | A81S | Gct | Tct | 37 | 37 | AY.103 | 0.00023 |
M | 81 | A81S | Gct | Tct | 37 | 37 | B.1.575 | 0.011226 |
M | 81 | A81S | Gct | Tct | 32 | 32 | Q.8 | 0.005277 |
M | 81 | A81A | gcT | gcC | 31 | 31 | B.1.1.7 | 0.000028 |
M | 81 | A81S | Gct | Tct | 27 | 27 | AY.98.1 | 0.001308 |
M | 81 | A81S | Gct | Tct | 23 | 23 | AY.75 | 0.001289 |
M | 81 | A81S | Gct | Tct | 23 | 23 | B.1.177 | 0.000303 |
M | 81 | A81S | Gct | Tct | 22 | 22 | AY.42 | 0.000885 |
M | 81 | A81S | Gct | Tct | 22 | 22 | B.1.1.28 | 0.006847 |
M | 81 | A81S | Gct | Tct | 21 | 21 | B.1.1 | 0.000381 |
M | 81 | A81S | Gct | Tct | 19 | 19 | AY.69 | 0.003547 |
M | 81 | A81S | Gct | Tct | 18 | 18 | AY.39 | 0.000445 |
M | 81 | A81S | Gct | Tct | 17 | 17 | AY.16 | 0.006454 |
M | 81 | A81S | Gct | Tct | 17 | 17 | AY.25 | 0.000102 |
M | 81 | A81S | Gct | Tct | 17 | 17 | AY.75.1 | 0.003065 |
M | 81 | A81A | gcT | gcG | 16 | 17 | B.1.234 | 0.002111 |
M | 81 | A81A | gcT | gcC | 1 | 17 | B.1.234 | 0.000132 |
M | 81 | A81A | gcT | gcC | 11 | 15 | AY.25 | 0.000066 |
M | 81 | A81A | gcT | gcG | 4 | 15 | AY.25 | 0.000024 |
M | 81 | A81S | Gct | Tct | 14 | 14 | AY.102 | 0.000371 |
M | 81 | A81A | gcT | gcC | 14 | 14 | AY.44 | 0.000085 |
M | 81 | A81S | Gct | Tct | 14 | 14 | AY.74 | 0.001619 |
M | 81 | A81S | Gct | Tct | 14 | 14 | B.1 | 0.000128 |
M | 81 | A81S | Gct | Tct | 13 | 13 | B.1.110.3 | 0.009339 |
M | 81 | A81S | Gct | Tct | 12 | 12 | AY.100 | 0.000552 |
M | 81 | A81S | Gct | Tct | 12 | 12 | AY.111 | 0.002198 |
M | 81 | A81S | Gct | Tct | 12 | 12 | AY.47 | 0.000373 |
M | 81 | A81del | GCT | --- | 12 | 12 | B.1.1.7 | 0.000011 |
M | 81 | A81A | gcT | gcC | 11 | 11 | AY.102 | 0.000292 |
M | 81 | A81A | gcT | gcC | 11 | 11 | AY.39.1 | 0.000436 |
M | 81 | A81V | gCt | gTt | 10 | 10 | All | 0.000002 |
M | 81 | A81S | Gct | Tct | 10 | 10 | B.1.429 | 0.000235 |
M | 81 | A81S | Gct | Tct | 10 | 10 | B.1.526 | 0.000235 |
M | 81 | A81A | gcT | gcC | 9 | 9 | AY.9 | 0.000608 |
M | 81 | A81S | Gct | Tct | 8 | 8 | AY.121 | 0.001083 |
M | 81 | A81S | Gct | Tct | 8 | 8 | AY.26 | 0.000226 |
M | 81 | A81S | Gct | Tct | 8 | 8 | AY.5 | 0.000165 |
M | 81 | A81S | Gct | Tct | 8 | 8 | B.1.177.35 | 0.005529 |
M | 81 | A81A | gcT | gcC | 8 | 8 | B.1.2 | 0.00007 |
M | 81 | A81S | Gct | Tct | 8 | 8 | B.6.6 | 0.007111 |
M | 81 | A81A | gcT | gcC | 7 | 7 | AY.26 | 0.000198 |
M | 81 | A81S | Gct | Tct | 7 | 7 | AY.3 | 0.00007 |
M | 81 | A81S | Gct | Tct | 7 | 7 | AY.33 | 0.000467 |
M | 81 | A81G | gCt | gGt | 6 | 6 | All | 0.000001 |
M | 81 | A81A | gcT | gcC | 6 | 6 | AY.20 | 0.000233 |
M | 81 | A81S | Gct | Tct | 6 | 6 | AY.61 | 0.000629 |
M | 81 | A81A | gcT | gcC | 3 | 6 | B.1 | 0.000027 |
M | 81 | A81A | gcT | gcA | 3 | 6 | B.1 | 0.000027 |
M | 81 | A81S | Gct | Tct | 6 | 6 | B.1.1.243 | 0.02449 |
M | 81 | A81P | Gct | Cct | 5 | 5 | All | 0.000001 |
M | 81 | A81S | Gct | Tct | 5 | 5 | AY.119 | 0.000177 |
M | 81 | A81S | Gct | Tct | 5 | 5 | AY.120 | 0.000186 |
M | 81 | A81A | gcT | gcC | 5 | 5 | AY.3.1 | 0.000426 |
M | 81 | A81S | Gct | Tct | 5 | 5 | B.1.1.318 | 0.001509 |
M | 81 | A81S | Gct | Tct | 5 | 5 | B.1.221 | 0.000355 |
M | 81 | A81S | Gct | Tct | 5 | 5 | B.1.617.1 | 0.000645 |
M | 81 | A81S | Gct | Tct | 5 | 5 | C.37 | 0.00058 |
M | 81 | A81S | Gct | Tct | 5 | 5 | M.1 | 0.116279 |
M | 81 | A81del | GCT | --- | 4 | 4 | 0.222222 | |
M | 81 | A81A | gcT | gcC | 4 | 4 | AY.100 | 0.000184 |
M | 81 | A81A | gcT | gcC | 4 | 4 | AY.113 | 0.00057 |
M | 81 | A81S | Gct | Tct | 4 | 4 | AY.117 | 0.000338 |
M | 81 | A81S | Gct | Tct | 4 | 4 | AY.46 | 0.000416 |
M | 81 | A81S | Gct | Tct | 4 | 4 | AY.9 | 0.00027 |
M | 81 | A81S | Gct | Tct | 4 | 4 | B.1.1.519 | 0.000159 |
M | 81 | A81S | Gct | Tct | 4 | 4 | B.1.258 | 0.000266 |
M | 81 | A81D | gCt | gAt | 3 | 3 | All | 0.000001 |
M | 81 | A81S | Gct | Tct | 3 | 3 | AY.110 | 0.000338 |
M | 81 | A81A | gcT | gcC | 3 | 3 | AY.118 | 0.000188 |
M | 81 | A81S | Gct | Tct | 3 | 3 | AY.23 | 0.000209 |
M | 81 | A81S | Gct | Tct | 3 | 3 | AY.29 | 0.000047 |
M | 81 | A81A | gcT | gcC | 3 | 3 | AY.36 | 0.000445 |
M | 81 | A81G | gCt | gGt | 3 | 3 | AY.4 | 0.000005 |
M | 81 | A81S | Gct | Tct | 3 | 3 | AY.41 | 0.000882 |
M | 81 | A81V | gCt | gTt | 3 | 3 | B.1 | 0.000027 |
M | 81 | A81S | Gct | Tct | 3 | 3 | B.1.596 | 0.000261 |
M | 81 | A81S | Gct | Tct | 3 | 3 | B.1.637 | 0.000219 |
M | 81 | A81A | gcT | gcC | 3 | 3 | N.5 | 0.0053 |
M | 81 | A81S | Gct | Tct | 3 | 3 | P.1.14 | 0.000143 |
M | 81 | A81V | gCt | gTt | 2 | 2 | 0.111111 | |
M | 81 | A81G | gCt | gGt | 2 | 2 | 0.111111 | |
M | 81 | A81T | Gct | Act | 2 | 2 | All | 0 |
M | 81 | A81del1 | gcT | gc- | 1 | 2 | All | 0 |
M | 81 | A81del1 | Gct | -ct | 1 | 2 | All | 0 |
M | 81 | A81S | Gct | Tct | 2 | 2 | AY.118 | 0.000125 |
M | 81 | A81A | gcT | gcC | 2 | 2 | AY.29.1 | 0.000441 |
M | 81 | A81A | gcT | gcC | 2 | 2 | AY.4.2 | 0.000043 |
M | 81 | A81S | Gct | Tct | 2 | 2 | AY.45 | 0.000243 |
M | 81 | A81A | gcT | gcC | 2 | 2 | AY.45 | 0.000243 |
M | 81 | A81S | Gct | Tct | 2 | 2 | AY.46.3 | 0.001867 |
M | 81 | A81A | gcT | gcC | 2 | 2 | AY.5 | 0.000041 |
M | 81 | A81A | gcT | gcC | 2 | 2 | AY.64 | 0.00119 |
M | 81 | A81S | Gct | Tct | 2 | 2 | AY.67 | 0.000929 |
M | 81 | A81del | GCT | --- | 2 | 2 | AY.75.1 | 0.000361 |
M | 81 | A81S | Gct | Tct | 2 | 2 | AY.87 | 0.001665 |
M | 81 | A81A | gcT | gcC | 2 | 2 | AY.88 | 0.001768 |
M | 81 | A81S | Gct | Tct | 2 | 2 | AY.9.2 | 0.000073 |
M | 81 | A81S | Gct | Tct | 2 | 2 | AY.94 | 0.000885 |
M | 81 | A81A | gcT | gcC | 2 | 2 | AY.99.2 | 0.000184 |
M | 81 | A81P | Gct | Cct | 2 | 2 | B.1 | 0.000018 |
M | 81 | A81D | gCt | gAt | 2 | 2 | B.1 | 0.000018 |
M | 81 | A81S | Gct | Tct | 2 | 2 | B.1.1.214 | 0.000111 |
M | 81 | A81S | Gct | Tct | 2 | 2 | B.1.1.311 | 0.000716 |
M | 81 | A81S | Gct | Tct | 2 | 2 | B.1.1.369 | 0.000892 |
M | 81 | A81S | Gct | Tct | 2 | 2 | B.1.1.416 | 0.00181 |
M | 81 | A81A | gcT | gcC | 2 | 2 | B.1.1.519 | 0.000079 |
M | 81 | A81S | Gct | Tct | 2 | 2 | B.1.160 | 0.000062 |
M | 81 | A81A | gcT | gcC | 2 | 2 | B.1.177.86 | 0.000367 |
M | 81 | A81S | Gct | Tct | 2 | 2 | B.1.36.29 | 0.001035 |
M | 81 | A81S | Gct | Tct | 2 | 2 | B.1.427 | 0.000101 |
M | 81 | A81A | gcT | gcA | 2 | 2 | B.1.427 | 0.000101 |
M | 81 | A81S | Gct | Tct | 2 | 2 | B.1.604 | 0.034483 |
M | 81 | A81S | Gct | Tct | 2 | 2 | B.1.609 | 0.000959 |
M | 81 | A81del | GCT | --- | 2 | 2 | B.1.617.2 | 0.000008 |
M | 81 | A81S | Gct | Tct | 2 | 2 | B.1.631 | 0.006734 |
M | 81 | A81A | gcT | gcC | 2 | 2 | B.1.632 | 0.013423 |
M | 81 | A81S | Gct | Tct | 2 | 2 | D.2 | 0.00015 |
M | 81 | A81A | gcT | gcC | 2 | 2 | P.1 | 0.000032 |
M | 81 | A81S | Gct | Tct | 2 | 2 | P.1.15 | 0.000465 |
M | 81 | A81S | Gct | Tct | 1 | 1 | AY.10 | 0.00053 |
M | 81 | A81S | Gct | Tct | 1 | 1 | AY.104 | 0.001984 |
M | 81 | A81A | gcT | gcC | 1 | 1 | AY.105 | 0.000643 |
M | 81 | A81S | Gct | Tct | 1 | 1 | AY.109 | 0.00074 |
M | 81 | A81S | Gct | Tct | 1 | 1 | AY.12 | 0.000316 |
M | 81 | A81del | GCT | --- | 1 | 1 | AY.120 | 0.000037 |
M | 81 | A81A | gcT | gcC | 1 | 1 | AY.120 | 0.000037 |
M | 81 | A81A | gcT | gcC | 1 | 1 | AY.120.1 | 0.000321 |
M | 81 | A81S | Gct | Tct | 1 | 1 | AY.14 | 0.000088 |
M | 81 | A81S | Gct | Tct | 1 | 1 | AY.16.1 | 0.00047 |
M | 81 | A81S | Gct | Tct | 1 | 1 | AY.20 | 0.000039 |
M | 81 | A81A | gcT | gcC | 1 | 1 | AY.23 | 0.00007 |
M | 81 | A81S | Gct | Tct | 1 | 1 | AY.3.1 | 0.000085 |
M | 81 | A81A | gcT | gcC | 1 | 1 | AY.33 | 0.000067 |
M | 81 | A81A | gcT | gcC | 1 | 1 | AY.35 | 0.000233 |
M | 81 | A81A | gcT | gcC | 1 | 1 | AY.38 | 0.000499 |
M | 81 | A81S | Gct | Tct | 1 | 1 | AY.38 | 0.000499 |
M | 81 | A81T | Gct | Act | 1 | 1 | AY.4 | 0.000002 |
M | 81 | A81P | Gct | Cct | 1 | 1 | AY.4 | 0.000002 |
M | 81 | A81S | Gct | Tct | 1 | 1 | AY.4.4 | 0.000409 |
M | 81 | A81A | gcT | gcC | 1 | 1 | AY.4.5 | 0.000107 |
M | 81 | A81A | gcT | gcC | 1 | 1 | AY.46 | 0.000104 |
M | 81 | A81A | gcT | gcC | 1 | 1 | AY.46.6 | 0.000072 |
M | 81 | A81A | gcT | gcC | 1 | 1 | AY.47 | 0.000031 |
M | 81 | A81A | gcT | gcC | 1 | 1 | AY.5.4 | 0.000277 |
M | 81 | A81S | Gct | Tct | 1 | 1 | AY.52 | 0.000814 |
M | 81 | A81A | gcT | gcC | 1 | 1 | AY.55 | 0.000917 |
M | 81 | A81S | Gct | Tct | 1 | 1 | AY.60 | 0.000938 |
M | 81 | A81S | Gct | Tct | 1 | 1 | AY.7.1 | 0.000113 |
M | 81 | A81S | Gct | Tct | 1 | 1 | AY.71 | 0.000475 |
M | 81 | A81S | Gct | Tct | 1 | 1 | AY.72 | 0.001361 |
M | 81 | A81S | Gct | Tct | 1 | 1 | AY.77 | 0.001127 |
M | 81 | A81A | gcT | gcC | 1 | 1 | AY.9.1 | 0.000084 |
M | 81 | A81A | gcT | gcC | 1 | 1 | AY.9.2 | 0.000037 |
M | 81 | A81S | Gct | Tct | 1 | 1 | AY.93 | 0.000273 |
M | 81 | A81A | gcT | gcC | 1 | 1 | AY.98 | 0.000079 |
M | 81 | A81S | Gct | Tct | 1 | 1 | AY.98 | 0.000079 |
M | 81 | A81A | gcT | gcC | 1 | 1 | B | 0.000128 |
M | 81 | A81del1 | Gct | -ct | 1 | 1 | B.1 | 0.000009 |
M | 81 | A81del | GCT | --- | 1 | 1 | B.1 | 0.000009 |
M | 81 | A81P | Gct | Cct | 1 | 1 | B.1.1 | 0.000018 |
M | 81 | A81G | gCt | gGt | 1 | 1 | B.1.1 | 0.000018 |
M | 81 | A81del1 | gcT | gc- | 1 | 1 | B.1.1 | 0.000018 |
M | 81 | A81S | Gct | Tct | 1 | 1 | B.1.1.216 | 0.00089 |
M | 81 | A81S | Gct | Tct | 1 | 1 | B.1.1.222 | 0.000204 |
M | 81 | A81S | Gct | Tct | 1 | 1 | B.1.1.277 | 0.000759 |
M | 81 | A81D | gCt | gAt | 1 | 1 | B.1.1.326 | 0.001761 |
M | 81 | A81S | Gct | Tct | 1 | 1 | B.1.1.33 | 0.000421 |
M | 81 | A81A | gcT | gcA | 1 | 1 | B.1.1.348 | 0.000796 |
M | 81 | A81V | gCt | gTt | 1 | 1 | B.1.1.372 | 0.000689 |
M | 81 | A81del | GCT | --- | 1 | 1 | B.1.1.372 | 0.000689 |
M | 81 | A81V | gCt | gTt | 1 | 1 | B.1.1.39 | 0.00051 |
M | 81 | A81S | Gct | Tct | 1 | 1 | B.1.1.397 | 0.002252 |
M | 81 | A81S | Gct | Tct | 1 | 1 | B.1.1.50 | 0.000679 |
M | 81 | A81S | Gct | Tct | 1 | 1 | B.1.1.58 | 0.005376 |
M | 81 | A81P | Gct | Cct | 1 | 1 | B.1.1.7 | 0.000001 |
M | 81 | A81T | Gct | Act | 1 | 1 | B.1.1.7 | 0.000001 |
M | 81 | A81A | gcT | gcA | 1 | 1 | B.1.1.70 | 0.000341 |
M | 81 | A81S | Gct | Tct | 1 | 1 | B.1.1.70 | 0.000341 |
M | 81 | A81A | gcT | gcC | 1 | 1 | B.1.1.77 | 0.041667 |
M | 81 | A81del | GCT | --- | 1 | 1 | B.1.160 | 0.000031 |
M | 81 | A81A | gcT | gcC | 1 | 1 | B.1.160 | 0.000031 |
M | 81 | A81A | gcT | gcC | 1 | 1 | B.1.160.16 | 0.000929 |
M | 81 | A81del | GCT | --- | 1 | 1 | B.1.161 | 0.017241 |
M | 81 | A81A | gcT | gcC | 1 | 1 | B.1.177 | 0.000013 |
M | 81 | A81A | gcT | gcC | 1 | 1 | B.1.177.21 | 0.000076 |
M | 81 | A81A | gcT | gcC | 1 | 1 | B.1.177.54 | 0.000606 |
M | 81 | A81S | Gct | Tct | 1 | 1 | B.1.177.57 | 0.000281 |
M | 81 | A81S | Gct | Tct | 1 | 1 | B.1.177.58 | 0.001332 |
M | 81 | A81S | Gct | Tct | 1 | 1 | B.1.177.81 | 0.000189 |
M | 81 | A81S | Gct | Tct | 1 | 1 | B.1.236 | 0.002053 |
M | 81 | A81del | GCT | --- | 1 | 1 | B.1.258.11 | 0.000396 |
M | 81 | A81A | gcT | gcC | 1 | 1 | B.1.311 | 0.000275 |
M | 81 | A81S | Gct | Tct | 1 | 1 | B.1.351 | 0.00003 |
M | 81 | A81S | Gct | Tct | 1 | 1 | B.1.36 | 0.000146 |
M | 81 | A81A | gcT | gcC | 1 | 1 | B.1.36.38 | 0.001642 |
M | 81 | A81S | Gct | Tct | 1 | 1 | B.1.389 | 0.001002 |
M | 81 | A81S | Gct | Tct | 1 | 1 | B.1.409 | 0.000781 |
M | 81 | A81A | gcT | gcC | 1 | 1 | B.1.416.1 | 0.001563 |
M | 81 | A81S | Gct | Tct | 1 | 1 | B.1.426 | 0.001009 |
M | 81 | A81S | Gct | Tct | 1 | 1 | B.1.428 | 0.00102 |
M | 81 | A81S | Gct | Tct | 1 | 1 | B.1.436 | 0.001029 |
M | 81 | A81S | Gct | Tct | 1 | 1 | B.1.466.2 | 0.000391 |
M | 81 | A81S | Gct | Tct | 1 | 1 | B.1.525 | 0.000113 |
M | 81 | A81S | Gct | Tct | 1 | 1 | B.1.564 | 0.000426 |
M | 81 | A81A | gcT | gcC | 1 | 1 | B.1.575 | 0.000303 |
M | 81 | A81del | GCT | --- | 1 | 1 | B.1.577 | 0.000687 |
M | 81 | A81S | Gct | Tct | 1 | 1 | B.1.589 | 0.007576 |
M | 81 | A81V | gCt | gTt | 1 | 1 | B.1.596 | 0.000087 |
M | 81 | A81A | gcT | gcC | 1 | 1 | B.1.596 | 0.000087 |
M | 81 | A81del | GCT | --- | 1 | 1 | B.1.596 | 0.000087 |
M | 81 | A81V | gCt | gTt | 1 | 1 | B.1.606 | 0.006024 |
M | 81 | A81S | Gct | Tct | 1 | 1 | B.1.625 | 0.002353 |
M | 81 | A81del | GCT | --- | 1 | 1 | B.1.627 | 0.00202 |
M | 81 | A81S | Gct | Tct | 1 | 1 | B.1.628 | 0.000352 |
M | 81 | A81S | Gct | Tct | 1 | 1 | B.61 | 0.005747 |
M | 81 | A81V | gCt | gTt | 1 | 1 | D.2 | 0.000075 |
M | 81 | A81A | gcT | gcC | 1 | 1 | D.2 | 0.000075 |
M | 81 | A81S | Gct | Tct | 1 | 1 | P.1.12 | 0.000484 |
M | 81 | A81A | gcT | gcC | 1 | 1 | P.1.14 | 0.000048 |
M | 81 | A81del | GCT | --- | 1 | 1 | P.1.15 | 0.000232 |
M | 81 | A81S | Gct | Tct | 1 | 1 | P.1.17 | 0.000162 |
M | 81 | A81S | Gct | Tct | 1 | 1 | P.1.4 | 0.000977 |
M | 81 | A81S | Gct | Tct | 1 | 1 | P.2 | 0.000187 |
M | 81 | A81S | Gct | Tct | 1 | 1 | Q.1 | 0.000126 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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