CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = M : CodonNum = 81

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
M81A81SnonsynGctTct2172121721126763-26765
M81A81AsyngcTgcC6786280.92625426763-26765
M81A81AsyngcTgcA678300.044247826763-26765
M81A81AsyngcTgcG678200.029498526763-26765
M81A81deldelGCT---8787126763-26765
M81A81VnonsyngCtgTt1010126763-26765
M81A81GnonsyngCtgGt66126763-26765
M81A81PnonsynGctCct55126763-26765
M81A81DnonsyngCtgAt33126763-26765
M81A81TnonsynGctAct22126763-26765
M81A81del1delgcTgc-210.526763-26765
M81A81del1delGct-ct210.526763-26765

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
M81A81SGctTct2172121721All0.004154
M81A81SGctTct1505015050AY.270.974047
M81A81SGctTct37923792AY.40.005902
M81A81SGctTct14581458B.1.1.70.001305
M81A81AgcTgcC628678All0.00012
M81A81AgcTgcA30678All0.000006
M81A81AgcTgcG20678All0.000004
M81A81SGctTct249249B.1.617.20.000938
M81A81AgcTgcC162162AY.290.002555
M81A81SGctTct132132AY.4.20.002863
M81A81SGctTct110110B.1.20.000969
M81A81AgcTgcC105105AY.40.000163
M81A81SGctTct9898AY.430.000434
M81A81delGCT---8787All0.000017
M81A81SGctTct6767AY.370.021176
M81A81AgcTgcC6061AY.30.000597
M81A81AgcTgcA161AY.30.00001
M81A81delGCT---5757B.1.177.210.004359
M81A81SGctTct5151AY.440.00031
M81A81AgcTgcC5050B.1.617.20.000188
M81A81AgcTgcC4445AY.1030.000273
M81A81AgcTgcA145AY.1030.000006
M81A81AgcTgcA2142AY.430.000093
M81A81AgcTgcC2142AY.430.000093
M81A81SGctTct4242P.10.000662
M81A81SGctTct3737AY.1030.00023
M81A81SGctTct3737B.1.5750.011226
M81A81SGctTct3232Q.80.005277
M81A81AgcTgcC3131B.1.1.70.000028
M81A81SGctTct2727AY.98.10.001308
M81A81SGctTct2323AY.750.001289
M81A81SGctTct2323B.1.1770.000303
M81A81SGctTct2222AY.420.000885
M81A81SGctTct2222B.1.1.280.006847
M81A81SGctTct2121B.1.10.000381
M81A81SGctTct1919AY.690.003547
M81A81SGctTct1818AY.390.000445
M81A81SGctTct1717AY.160.006454
M81A81SGctTct1717AY.250.000102
M81A81SGctTct1717AY.75.10.003065
M81A81AgcTgcG1617B.1.2340.002111
M81A81AgcTgcC117B.1.2340.000132
M81A81AgcTgcC1115AY.250.000066
M81A81AgcTgcG415AY.250.000024
M81A81SGctTct1414AY.1020.000371
M81A81AgcTgcC1414AY.440.000085
M81A81SGctTct1414AY.740.001619
M81A81SGctTct1414B.10.000128
M81A81SGctTct1313B.1.110.30.009339
M81A81SGctTct1212AY.1000.000552
M81A81SGctTct1212AY.1110.002198
M81A81SGctTct1212AY.470.000373
M81A81delGCT---1212B.1.1.70.000011
M81A81AgcTgcC1111AY.1020.000292
M81A81AgcTgcC1111AY.39.10.000436
M81A81VgCtgTt1010All0.000002
M81A81SGctTct1010B.1.4290.000235
M81A81SGctTct1010B.1.5260.000235
M81A81AgcTgcC99AY.90.000608
M81A81SGctTct88AY.1210.001083
M81A81SGctTct88AY.260.000226
M81A81SGctTct88AY.50.000165
M81A81SGctTct88B.1.177.350.005529
M81A81AgcTgcC88B.1.20.00007
M81A81SGctTct88B.6.60.007111
M81A81AgcTgcC77AY.260.000198
M81A81SGctTct77AY.30.00007
M81A81SGctTct77AY.330.000467
M81A81GgCtgGt66All0.000001
M81A81AgcTgcC66AY.200.000233
M81A81SGctTct66AY.610.000629
M81A81AgcTgcC36B.10.000027
M81A81AgcTgcA36B.10.000027
M81A81SGctTct66B.1.1.2430.02449
M81A81PGctCct55All0.000001
M81A81SGctTct55AY.1190.000177
M81A81SGctTct55AY.1200.000186
M81A81AgcTgcC55AY.3.10.000426
M81A81SGctTct55B.1.1.3180.001509
M81A81SGctTct55B.1.2210.000355
M81A81SGctTct55B.1.617.10.000645
M81A81SGctTct55C.370.00058
M81A81SGctTct55M.10.116279
M81A81delGCT---440.222222
M81A81AgcTgcC44AY.1000.000184
M81A81AgcTgcC44AY.1130.00057
M81A81SGctTct44AY.1170.000338
M81A81SGctTct44AY.460.000416
M81A81SGctTct44AY.90.00027
M81A81SGctTct44B.1.1.5190.000159
M81A81SGctTct44B.1.2580.000266
M81A81DgCtgAt33All0.000001
M81A81SGctTct33AY.1100.000338
M81A81AgcTgcC33AY.1180.000188
M81A81SGctTct33AY.230.000209
M81A81SGctTct33AY.290.000047
M81A81AgcTgcC33AY.360.000445
M81A81GgCtgGt33AY.40.000005
M81A81SGctTct33AY.410.000882
M81A81VgCtgTt33B.10.000027
M81A81SGctTct33B.1.5960.000261
M81A81SGctTct33B.1.6370.000219
M81A81AgcTgcC33N.50.0053
M81A81SGctTct33P.1.140.000143
M81A81VgCtgTt220.111111
M81A81GgCtgGt220.111111
M81A81TGctAct22All0
M81A81del1gcTgc-12All0
M81A81del1Gct-ct12All0
M81A81SGctTct22AY.1180.000125
M81A81AgcTgcC22AY.29.10.000441
M81A81AgcTgcC22AY.4.20.000043
M81A81SGctTct22AY.450.000243
M81A81AgcTgcC22AY.450.000243
M81A81SGctTct22AY.46.30.001867
M81A81AgcTgcC22AY.50.000041
M81A81AgcTgcC22AY.640.00119
M81A81SGctTct22AY.670.000929
M81A81delGCT---22AY.75.10.000361
M81A81SGctTct22AY.870.001665
M81A81AgcTgcC22AY.880.001768
M81A81SGctTct22AY.9.20.000073
M81A81SGctTct22AY.940.000885
M81A81AgcTgcC22AY.99.20.000184
M81A81PGctCct22B.10.000018
M81A81DgCtgAt22B.10.000018
M81A81SGctTct22B.1.1.2140.000111
M81A81SGctTct22B.1.1.3110.000716
M81A81SGctTct22B.1.1.3690.000892
M81A81SGctTct22B.1.1.4160.00181
M81A81AgcTgcC22B.1.1.5190.000079
M81A81SGctTct22B.1.1600.000062
M81A81AgcTgcC22B.1.177.860.000367
M81A81SGctTct22B.1.36.290.001035
M81A81SGctTct22B.1.4270.000101
M81A81AgcTgcA22B.1.4270.000101
M81A81SGctTct22B.1.6040.034483
M81A81SGctTct22B.1.6090.000959
M81A81delGCT---22B.1.617.20.000008
M81A81SGctTct22B.1.6310.006734
M81A81AgcTgcC22B.1.6320.013423
M81A81SGctTct22D.20.00015
M81A81AgcTgcC22P.10.000032
M81A81SGctTct22P.1.150.000465
M81A81SGctTct11AY.100.00053
M81A81SGctTct11AY.1040.001984
M81A81AgcTgcC11AY.1050.000643
M81A81SGctTct11AY.1090.00074
M81A81SGctTct11AY.120.000316
M81A81delGCT---11AY.1200.000037
M81A81AgcTgcC11AY.1200.000037
M81A81AgcTgcC11AY.120.10.000321
M81A81SGctTct11AY.140.000088
M81A81SGctTct11AY.16.10.00047
M81A81SGctTct11AY.200.000039
M81A81AgcTgcC11AY.230.00007
M81A81SGctTct11AY.3.10.000085
M81A81AgcTgcC11AY.330.000067
M81A81AgcTgcC11AY.350.000233
M81A81AgcTgcC11AY.380.000499
M81A81SGctTct11AY.380.000499
M81A81TGctAct11AY.40.000002
M81A81PGctCct11AY.40.000002
M81A81SGctTct11AY.4.40.000409
M81A81AgcTgcC11AY.4.50.000107
M81A81AgcTgcC11AY.460.000104
M81A81AgcTgcC11AY.46.60.000072
M81A81AgcTgcC11AY.470.000031
M81A81AgcTgcC11AY.5.40.000277
M81A81SGctTct11AY.520.000814
M81A81AgcTgcC11AY.550.000917
M81A81SGctTct11AY.600.000938
M81A81SGctTct11AY.7.10.000113
M81A81SGctTct11AY.710.000475
M81A81SGctTct11AY.720.001361
M81A81SGctTct11AY.770.001127
M81A81AgcTgcC11AY.9.10.000084
M81A81AgcTgcC11AY.9.20.000037
M81A81SGctTct11AY.930.000273
M81A81AgcTgcC11AY.980.000079
M81A81SGctTct11AY.980.000079
M81A81AgcTgcC11B0.000128
M81A81del1Gct-ct11B.10.000009
M81A81delGCT---11B.10.000009
M81A81PGctCct11B.1.10.000018
M81A81GgCtgGt11B.1.10.000018
M81A81del1gcTgc-11B.1.10.000018
M81A81SGctTct11B.1.1.2160.00089
M81A81SGctTct11B.1.1.2220.000204
M81A81SGctTct11B.1.1.2770.000759
M81A81DgCtgAt11B.1.1.3260.001761
M81A81SGctTct11B.1.1.330.000421
M81A81AgcTgcA11B.1.1.3480.000796
M81A81VgCtgTt11B.1.1.3720.000689
M81A81delGCT---11B.1.1.3720.000689
M81A81VgCtgTt11B.1.1.390.00051
M81A81SGctTct11B.1.1.3970.002252
M81A81SGctTct11B.1.1.500.000679
M81A81SGctTct11B.1.1.580.005376
M81A81PGctCct11B.1.1.70.000001
M81A81TGctAct11B.1.1.70.000001
M81A81AgcTgcA11B.1.1.700.000341
M81A81SGctTct11B.1.1.700.000341
M81A81AgcTgcC11B.1.1.770.041667
M81A81delGCT---11B.1.1600.000031
M81A81AgcTgcC11B.1.1600.000031
M81A81AgcTgcC11B.1.160.160.000929
M81A81delGCT---11B.1.1610.017241
M81A81AgcTgcC11B.1.1770.000013
M81A81AgcTgcC11B.1.177.210.000076
M81A81AgcTgcC11B.1.177.540.000606
M81A81SGctTct11B.1.177.570.000281
M81A81SGctTct11B.1.177.580.001332
M81A81SGctTct11B.1.177.810.000189
M81A81SGctTct11B.1.2360.002053
M81A81delGCT---11B.1.258.110.000396
M81A81AgcTgcC11B.1.3110.000275
M81A81SGctTct11B.1.3510.00003
M81A81SGctTct11B.1.360.000146
M81A81AgcTgcC11B.1.36.380.001642
M81A81SGctTct11B.1.3890.001002
M81A81SGctTct11B.1.4090.000781
M81A81AgcTgcC11B.1.416.10.001563
M81A81SGctTct11B.1.4260.001009
M81A81SGctTct11B.1.4280.00102
M81A81SGctTct11B.1.4360.001029
M81A81SGctTct11B.1.466.20.000391
M81A81SGctTct11B.1.5250.000113
M81A81SGctTct11B.1.5640.000426
M81A81AgcTgcC11B.1.5750.000303
M81A81delGCT---11B.1.5770.000687
M81A81SGctTct11B.1.5890.007576
M81A81VgCtgTt11B.1.5960.000087
M81A81AgcTgcC11B.1.5960.000087
M81A81delGCT---11B.1.5960.000087
M81A81VgCtgTt11B.1.6060.006024
M81A81SGctTct11B.1.6250.002353
M81A81delGCT---11B.1.6270.00202
M81A81SGctTct11B.1.6280.000352
M81A81SGctTct11B.610.005747
M81A81VgCtgTt11D.20.000075
M81A81AgcTgcC11D.20.000075
M81A81SGctTct11P.1.120.000484
M81A81AgcTgcC11P.1.140.000048
M81A81delGCT---11P.1.150.000232
M81A81SGctTct11P.1.170.000162
M81A81SGctTct11P.1.40.000977
M81A81SGctTct11P.20.000187
M81A81SGctTct11Q.10.000126