CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = M : CodonNum = 63

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
M63A63SnonsynGctTct12051205126709-26711
M63A63VnonsyngCtgTt7587560.99736126709-26711
M63A63VnonsyngCTgTA75820.0026385226709-26711
M63A63TnonsynGctAct5875850.99659326709-26711
M63A63TnonsynGcTAcA58720.0034071526709-26711
M63A63AsyngcTgcC3291830.55623126709-26711
M63A63AsyngcTgcA329850.25835926709-26711
M63A63AsyngcTgcG329610.1854126709-26711
M63A63deldelGCT---6868126709-26711
M63A63DnonsyngCtgAt1010126709-26711
M63A63del2delGCTA--44126709-26711
M63A63del1delgcTgc-420.526709-26711
M63A63del1delGct-ct420.526709-26711
M63A63PnonsynGctCct22126709-26711
M63A63GnonsyngCtgGt22126709-26711
M63A63RnonsynGCTCGC11126709-26711
M63A63FnonsynGCtTTt11126709-26711
M63A63LnonsynGCtCTt11126709-26711

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
M63A63SGctTct12051205All0.00023
M63A63VgCtgTt756758All0.000145
M63A63VgCTgTA2758All0
M63A63TGctAct585587All0.000112
M63A63TGcTAcA2587All0
M63A63SGctTct567567AY.40.000882
M63A63VgCtgTt423423AY.40.000658
M63A63AgcTgcC183329All0.000035
M63A63AgcTgcA85329All0.000016
M63A63AgcTgcG61329All0.000012
M63A63SGctTct205205B.1.5960.017863
M63A63TGctAct197197B.1.1.70.000176
M63A63TGctAct196196AV.10.989899
M63A63SGctTct164164B.1.1.70.000147
M63A63AgcTgcC115116AY.1030.000714
M63A63AgcTgcG1116AY.1030.000006
M63A63VgCtgTt9393B.1.1.70.000083
M63A63AgcTgcA7272AY.860.059751
M63A63delGCT---6868All0.000013
M63A63TGctAct5656B.1.6350.982456
M63A63SGctTct5555AY.430.000244
M63A63delGCT---4343B.1.177.210.003288
M63A63SGctTct3232B.1.617.20.00012
M63A63AgcTgcG2331B.1.1.70.000021
M63A63AgcTgcC831B.1.1.70.000007
M63A63VgCtgTt2525B.1.617.20.000094
M63A63SGctTct2020AY.99.20.001843
M63A63TGctAct2020B.1.10.000363
M63A63VgCtgTt2020B.1.1770.000263
M63A63SGctTct1919AY.420.000764
M63A63SGctTct1717P.1.140.000813
M63A63VgCtgTt1616B.10.000147
M63A63VgCtgTt1616B.1.20.000141
M63A63AgcTgcC1114B.1.617.20.000041
M63A63AgcTgcA214B.1.617.20.000008
M63A63AgcTgcG114B.1.617.20.000004
M63A63SGctTct1313B.1.20.000114
M63A63VgCtgTt1212AY.1030.000075
M63A63TGctAct1111AY.1030.000068
M63A63SGctTct1111B.1.10.0002
M63A63VgCtgTt1111B.1.5260.000259
M63A63VgCtgTt1111Q.30.001595
M63A63DgCtgAt1010All0.000002
M63A63VgCtgTt1010AY.390.000247
M63A63AgcTgcG910AY.40.000014
M63A63AgcTgcC110AY.40.000002
M63A63AgcTgcC510B.10.000046
M63A63AgcTgcG510B.10.000046
M63A63delGCT---1010B.1.1.70.000009
M63A63VgCtgTt99B.1.10.000163
M63A63AgcTgcC88AY.1020.000212
M63A63SGctTct88AY.1200.000297
M63A63SGctTct88AY.440.000049
M63A63VgCtgTt88AY.50.000165
M63A63TGctAct88B.10.000073
M63A63AgcTgcG48B.1.20.000035
M63A63AgcTgcC48B.1.20.000035
M63A63AgcTgcC88B.1.36.220.009662
M63A63TGctAct77C.370.000812
M63A63SGctTct77P.10.00011
M63A63AgcTgcC66AY.290.000095
M63A63SGctTct66AY.390.000148
M63A63VgCtgTt66AY.430.000027
M63A63VgCtgTt66AY.440.000037
M63A63TGctAct66B.1.5260.000141
M63A63TGctAct55A.50.009615
M63A63SGctTct55AY.1020.000133
M63A63TGctAct55AY.440.00003
M63A63SGctTct55AY.700.001043
M63A63VgCtgTt55B.1.1.700.001705
M63A63TGctAct55B.1.617.20.000019
M63A63VgCtgTt55P.1.160.001871
M63A63AgcTgcA440.222222
M63A63VgCtgTt240.111111
M63A63VgCTgTA240.111111
M63A63del2GCTA--44All0.000001
M63A63del1gcTgc-24All0
M63A63del1Gct-ct24All0
M63A63VgCtgTt44AY.116.10.001246
M63A63VgCtgTt44AY.250.000024
M63A63SGctTct44AY.30.00004
M63A63TGctAct44AY.430.000018
M63A63VgCtgTt44AY.450.000487
M63A63TGctAct44AY.540.000381
M63A63SGctTct44B.10.000037
M63A63del2GCTA--44B.1.177.210.000306
M63A63TGctAct44B.1.438.10.000429
M63A63SGctTct44B.1.5040.125
M63A63SGctTct44Q.80.00066
M63A63AgcTgcC33AY.29.10.000662
M63A63SGctTct33B.1.1.3170.001235
M63A63SGctTct33B.1.1.3530.0625
M63A63AgcTgcG23B.1.1770.000026
M63A63AgcTgcC13B.1.1770.000013
M63A63VgCtgTt33B.1.2180.015464
M63A63TGctAct33B.1.3510.000089
M63A63AgcTgcG33B.1.36.380.004926
M63A63DgCtgAt33B.1.617.20.000011
M63A63SGctTct33B.1.621.10.001517
M63A63TGctAct33B.60.00273
M63A63VgCtgTt33C.300.005181
M63A63VgCtgTt33C.370.000348
M63A63VgCtgTt33P.10.000047
M63A63DgCtgAt33P.10.000047
M63A63TGctAct33P.1.150.000697
M63A63TGctAct33P.20.00056
M63A63delGCT---220.111111
M63A63PGctCct22All0
M63A63GgCtgGt22All0
M63A63SGctTct22AY.1030.000012
M63A63TGctAct22AY.1130.000285
M63A63VgCtgTt22AY.120.000632
M63A63TGctAct22AY.250.000012
M63A63SGctTct22AY.260.000057
M63A63TGctAct22AY.30.00002
M63A63AgcTgcC12AY.30.00001
M63A63AgcTgcA12AY.30.00001
M63A63VgCtgTt22AY.3.10.000171
M63A63TGctAct22AY.39.10.000079
M63A63delGCT---22AY.430.000009
M63A63AgcTgcG12AY.440.000006
M63A63AgcTgcC12AY.440.000006
M63A63SGctTct22AY.5.40.000553
M63A63AgcTgcG22AY.590.001059
M63A63SGctTct22AY.75.10.000361
M63A63TGctAct22B.1.1.4640.002946
M63A63TGctAct22B.1.1.500.001358
M63A63VgCtgTt22B.1.1600.000062
M63A63TGctAct22B.1.20.000018
M63A63TGctAct22B.1.214.20.001199
M63A63VgCtgTt22B.1.2340.000264
M63A63TGctAct22B.1.2410.001623
M63A63TGctAct22B.1.3240.00321
M63A63VgCtgTt22B.1.5820.000981
M63A63delGCT---22B.1.617.20.000008
M63A63VgCtgTt22B.1.6210.000177
M63A63SGctTct22B.1.6340.006849
M63A63SGctTct22B.1.9.40.01227
M63A63TGctAct22B.6.60.001778
M63A63VgCtgTt22C.320.046512
M63A63VgCtgTt22D.20.00015
M63A63VgCtgTt22P.1.140.000096
M63A63SGctTct22P.1.70.000639
M63A63LGCtCTt11All0
M63A63FGCtTTt11All0
M63A63RGCTCGC11All0
M63A63TGctAct11AU.20.002421
M63A63VgCtgTt11AY.1010.00049
M63A63VgCtgTt11AY.1020.000027
M63A63AgcTgcC11AY.1060.000335
M63A63VgCtgTt11AY.1170.000085
M63A63AgcTgcG11AY.1170.000085
M63A63SGctTct11AY.1190.000035
M63A63AgcTgcG11AY.1200.000037
M63A63delGCT---11AY.1200.000037
M63A63VgCtgTt11AY.1200.000037
M63A63TGcTAcA11AY.120.10.000321
M63A63SGctTct11AY.140.000088
M63A63SGctTct11AY.200.000039
M63A63AgcTgcC11AY.200.000039
M63A63VgCtgTt11AY.200.000039
M63A63TGctAct11AY.230.00007
M63A63SGctTct11AY.23.10.000417
M63A63SGctTct11AY.250.000006
M63A63AgcTgcG11AY.250.000006
M63A63AgcTgcA11AY.260.000028
M63A63TGctAct11AY.290.000016
M63A63SGctTct11AY.290.000016
M63A63VgCtgTt11AY.30.00001
M63A63VgCtgTt11AY.330.000067
M63A63SGctTct11AY.34.10.00051
M63A63DgCtgAt11AY.40.000002
M63A63FGCtTTt11AY.40.000002
M63A63TGctAct11AY.40.000002
M63A63AgcTgcC11AY.4.20.000022
M63A63SGctTct11AY.4.20.000022
M63A63SGctTct11AY.4.30.000842
M63A63VgCtgTt11AY.4.50.000107
M63A63SGctTct11AY.4.50.000107
M63A63AgcTgcG11AY.4.50.000107
M63A63VgCtgTt11AY.420.00004
M63A63AgcTgcC11AY.430.000004
M63A63RGCTCGC11AY.440.000006
M63A63del1Gct-ct11AY.440.000006
M63A63DgCtgAt11AY.440.000006
M63A63SGctTct11AY.460.000104
M63A63VgCtgTt11AY.46.60.000072
M63A63SGctTct11AY.480.000465
M63A63AgcTgcC11AY.50.000021
M63A63SGctTct11AY.550.000917
M63A63AgcTgcG11AY.580.000907
M63A63VgCtgTt11AY.590.00053
M63A63VgCtgTt11AY.620.000436
M63A63AgcTgcG11AY.650.000533
M63A63VgCtgTt11AY.680.000274
M63A63TGctAct11AY.710.000475
M63A63TGctAct11AY.75.10.00018
M63A63LGCtCTt11AY.790.001211
M63A63TGctAct11AY.840.000437
M63A63AgcTgcG11AY.90.000068
M63A63AgcTgcA11AY.9.10.000084
M63A63VgCtgTt11AY.9.20.000037
M63A63TGctAct11AY.9.20.000037
M63A63AgcTgcA11AY.920.000287
M63A63VgCtgTt11AY.950.000761
M63A63TGctAct11AY.980.000079
M63A63TGctAct11B0.000128
M63A63DgCtgAt11B0.000128
M63A63AgcTgcC11B0.000128
M63A63PGctCct11B.10.000009
M63A63delGCT---11B.10.000009
M63A63del1gcTgc-11B.1.10.000018
M63A63SGctTct11B.1.1.1210.002427
M63A63VgCtgTt11B.1.1.2140.000055
M63A63VgCtgTt11B.1.1.2160.00089
M63A63TGctAct11B.1.1.250.000569
M63A63TGctAct11B.1.1.2690.001353
M63A63AgcTgcG11B.1.1.3180.000302
M63A63VgCtgTt11B.1.1.370.000193
M63A63TGctAct11B.1.1.3720.000689
M63A63delGCT---11B.1.1.3720.000689
M63A63SGctTct11B.1.1.500.000679
M63A63AgcTgcA11B.1.1.5190.00004
M63A63VgCtgTt11B.1.1.5190.00004
M63A63AgcTgcA11B.1.1.5230.001563
M63A63PGctCct11B.1.1.70.000001
M63A63GgCtgGt11B.1.1.70.000001
M63A63VgCtgTt11B.1.1110.001175
M63A63VgCtgTt11B.1.1470.000756
M63A63TGctAct11B.1.160.160.000929
M63A63SGctTct11B.1.160.200.008929
M63A63delGCT---11B.1.1610.017241
M63A63SGctTct11B.1.1770.000013
M63A63TGctAct11B.1.1770.000013
M63A63VgCtgTt11B.1.177.830.001481
M63A63SGctTct11B.1.2320.000537
M63A63VgCtgTt11B.1.2360.002053
M63A63SGctTct11B.1.2370.004975
M63A63AgcTgcC11B.1.2400.000216
M63A63VgCtgTt11B.1.2400.000216
M63A63AgcTgcC11B.1.2430.00007
M63A63TGctAct11B.1.2430.00007
M63A63VgCtgTt11B.1.2580.000067
M63A63SGctTct11B.1.2580.000067
M63A63delGCT---11B.1.258.110.000396
M63A63TGctAct11B.1.258.170.000104
M63A63AgcTgcC11B.1.258.30.001675
M63A63VgCtgTt11B.1.3510.00003
M63A63SGctTct11B.1.360.000146
M63A63TGctAct11B.1.36.290.000517
M63A63VgCtgTt11B.1.36.80.001
M63A63VgCtgTt11B.1.3610.001289
M63A63DgCtgAt11B.1.3690.000285
M63A63del1Gct-ct11B.1.3770.004566
M63A63SGctTct11B.1.4280.00102
M63A63AgcTgcC11B.1.4290.000024
M63A63del1gcTgc-11B.1.5250.000113
M63A63SGctTct11B.1.5250.000113
M63A63AgcTgcG11B.1.5250.000113
M63A63VgCtgTt11B.1.5640.000426
M63A63delGCT---11B.1.5770.000687
M63A63VgCtgTt11B.1.5960.000087
M63A63TGcTAcA11B.1.5960.000087
M63A63VgCtgTt11B.1.6090.000479
M63A63TGctAct11B.1.617.10.000129
M63A63TGctAct11B.1.621.10.000506
M63A63VgCtgTt11B.1.621.10.000506
M63A63delGCT---11B.1.6270.00202
M63A63VgCtgTt11B.1.6280.000352
M63A63VgCtgTt11B.1.690.035714
M63A63TGctAct11B.40.002208
M63A63VgCtgTt11B.550.00295
M63A63TGctAct11B.6.30.026316
M63A63SGctTct11C.370.000116
M63A63GgCtgGt11C.370.000116
M63A63TGctAct11P.10.000016
M63A63delGCT---11P.10.000016
M63A63AgcTgcG11P.10.000016
M63A63AgcTgcA11P.1.120.000484
M63A63delGCT---11P.1.150.000232
M63A63AgcTgcC11P.1.70.000319
M63A63VgCtgTt11P.40.003802