CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
M | 56 | L56L | syn | ctG | ctT | 8342 | 6960 | 0.834332 | 26688-26690 | |
M | 56 | L56L | syn | Ctg | Ttg | 8342 | 937 | 0.112323 | 26688-26690 | |
M | 56 | L56L | syn | ctG | ctA | 8342 | 372 | 0.0445936 | 26688-26690 | |
M | 56 | L56L | syn | ctG | ctC | 8342 | 72 | 0.00863102 | 26688-26690 | |
M | 56 | L56L | syn | CtG | TtA | 8342 | 1 | 0.000119875 | 26688-26690 | |
M | 56 | L56del | del | CTG | --- | 59 | 59 | 1 | 26688-26690 | |
M | 56 | L56M | nonsyn | Ctg | Atg | 9 | 9 | 1 | 26688-26690 | |
M | 56 | L56F | nonsyn | CtG | TtT | 8 | 8 | 1 | 26688-26690 | |
M | 56 | L56Q | nonsyn | cTg | cAg | 5 | 5 | 1 | 26688-26690 | |
M | 56 | L56P | nonsyn | cTG | cCA | 5 | 3 | 0.6 | 26688-26690 | |
M | 56 | L56P | nonsyn | cTg | cCg | 5 | 2 | 0.4 | 26688-26690 | |
M | 56 | L56del2 | del | cTG | c-- | 4 | 4 | 1 | 26688-26690 | |
M | 56 | L56del1 | del | ctG | ct- | 4 | 3 | 0.75 | 26688-26690 | |
M | 56 | L56V | nonsyn | CtG | GtA | 4 | 2 | 0.5 | 26688-26690 | |
M | 56 | L56V | nonsyn | Ctg | Gtg | 4 | 2 | 0.5 | 26688-26690 | |
M | 56 | L56del1 | del | CtG | -tT | 4 | 1 | 0.25 | 26688-26690 | |
M | 56 | L56R | nonsyn | cTg | cGg | 2 | 2 | 1 | 26688-26690 | |
M | 56 | L56W | nonsyn | CTg | TGg | 1 | 1 | 1 | 26688-26690 | |
M | 56 | L56A | nonsyn | CTG | GCA | 1 | 1 | 1 | 26688-26690 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
M | 56 | L56L | ctG | ctT | 6960 | 8342 | All | 0.001331 |
M | 56 | L56L | Ctg | Ttg | 937 | 8342 | All | 0.000179 |
M | 56 | L56L | ctG | ctA | 372 | 8342 | All | 0.000071 |
M | 56 | L56L | ctG | ctC | 72 | 8342 | All | 0.000014 |
M | 56 | L56L | CtG | TtA | 1 | 8342 | All | 0 |
M | 56 | L56L | ctG | ctT | 1005 | 1005 | B.1.564 | 0.428024 |
M | 56 | L56L | ctG | ctT | 639 | 793 | B.1.1.7 | 0.000572 |
M | 56 | L56L | Ctg | Ttg | 78 | 793 | B.1.1.7 | 0.00007 |
M | 56 | L56L | ctG | ctA | 67 | 793 | B.1.1.7 | 0.00006 |
M | 56 | L56L | ctG | ctC | 9 | 793 | B.1.1.7 | 0.000008 |
M | 56 | L56L | ctG | ctT | 472 | 472 | B.1.369 | 0.134626 |
M | 56 | L56L | ctG | ctT | 269 | 427 | B.1.617.2 | 0.001013 |
M | 56 | L56L | Ctg | Ttg | 149 | 427 | B.1.617.2 | 0.000561 |
M | 56 | L56L | ctG | ctA | 8 | 427 | B.1.617.2 | 0.00003 |
M | 56 | L56L | ctG | ctC | 1 | 427 | B.1.617.2 | 0.000004 |
M | 56 | L56L | ctG | ctT | 393 | 393 | AY.69 | 0.073362 |
M | 56 | L56L | ctG | ctT | 392 | 393 | B.1.240 | 0.084501 |
M | 56 | L56L | Ctg | Ttg | 1 | 393 | B.1.240 | 0.000216 |
M | 56 | L56L | ctG | ctT | 201 | 347 | AY.43 | 0.000891 |
M | 56 | L56L | Ctg | Ttg | 135 | 347 | AY.43 | 0.000598 |
M | 56 | L56L | ctG | ctA | 9 | 347 | AY.43 | 0.00004 |
M | 56 | L56L | ctG | ctC | 2 | 347 | AY.43 | 0.000009 |
M | 56 | L56L | ctG | ctT | 195 | 323 | B.1.2 | 0.001717 |
M | 56 | L56L | Ctg | Ttg | 110 | 323 | B.1.2 | 0.000969 |
M | 56 | L56L | ctG | ctA | 18 | 323 | B.1.2 | 0.000158 |
M | 56 | L56L | ctG | ctT | 204 | 276 | AY.4 | 0.000318 |
M | 56 | L56L | Ctg | Ttg | 59 | 276 | AY.4 | 0.000092 |
M | 56 | L56L | ctG | ctA | 11 | 276 | AY.4 | 0.000017 |
M | 56 | L56L | ctG | ctC | 2 | 276 | AY.4 | 0.000003 |
M | 56 | L56L | ctG | ctT | 239 | 248 | B.1 | 0.002189 |
M | 56 | L56L | ctG | ctA | 6 | 248 | B.1 | 0.000055 |
M | 56 | L56L | Ctg | Ttg | 2 | 248 | B.1 | 0.000018 |
M | 56 | L56L | ctG | ctC | 1 | 248 | B.1 | 0.000009 |
M | 56 | L56L | ctG | ctT | 211 | 226 | B.1.177 | 0.002778 |
M | 56 | L56L | ctG | ctA | 15 | 226 | B.1.177 | 0.000198 |
M | 56 | L56L | ctG | ctT | 212 | 213 | B.1.243 | 0.014752 |
M | 56 | L56L | Ctg | Ttg | 1 | 213 | B.1.243 | 0.00007 |
M | 56 | L56L | Ctg | Ttg | 155 | 209 | B.1.351 | 0.004608 |
M | 56 | L56L | ctG | ctT | 51 | 209 | B.1.351 | 0.001516 |
M | 56 | L56L | ctG | ctC | 3 | 209 | B.1.351 | 0.000089 |
M | 56 | L56L | ctG | ctT | 174 | 200 | AY.103 | 0.00108 |
M | 56 | L56L | ctG | ctC | 19 | 200 | AY.103 | 0.000118 |
M | 56 | L56L | Ctg | Ttg | 4 | 200 | AY.103 | 0.000025 |
M | 56 | L56L | ctG | ctA | 3 | 200 | AY.103 | 0.000019 |
M | 56 | L56L | ctG | ctT | 174 | 195 | AY.5 | 0.003593 |
M | 56 | L56L | ctG | ctA | 11 | 195 | AY.5 | 0.000227 |
M | 56 | L56L | ctG | ctC | 7 | 195 | AY.5 | 0.000145 |
M | 56 | L56L | Ctg | Ttg | 3 | 195 | AY.5 | 0.000062 |
M | 56 | L56L | ctG | ctT | 143 | 148 | B.1.258 | 0.009516 |
M | 56 | L56L | ctG | ctC | 4 | 148 | B.1.258 | 0.000266 |
M | 56 | L56L | ctG | ctA | 1 | 148 | B.1.258 | 0.000067 |
M | 56 | L56L | ctG | ctT | 76 | 133 | AY.25 | 0.000457 |
M | 56 | L56L | ctG | ctA | 55 | 133 | AY.25 | 0.000331 |
M | 56 | L56L | Ctg | Ttg | 2 | 133 | AY.25 | 0.000012 |
M | 56 | L56L | ctG | ctT | 70 | 130 | P.1 | 0.001103 |
M | 56 | L56L | Ctg | Ttg | 58 | 130 | P.1 | 0.000914 |
M | 56 | L56L | ctG | ctA | 2 | 130 | P.1 | 0.000032 |
M | 56 | L56L | ctG | ctT | 126 | 127 | B.1.617.1 | 0.01625 |
M | 56 | L56L | Ctg | Ttg | 1 | 127 | B.1.617.1 | 0.000129 |
M | 56 | L56L | ctG | ctT | 109 | 109 | A.23.1 | 0.076761 |
M | 56 | L56L | ctG | ctT | 83 | 88 | B.1.1 | 0.001506 |
M | 56 | L56L | Ctg | Ttg | 3 | 88 | B.1.1 | 0.000054 |
M | 56 | L56L | ctG | ctC | 1 | 88 | B.1.1 | 0.000018 |
M | 56 | L56L | CtG | TtA | 1 | 88 | B.1.1 | 0.000018 |
M | 56 | L56L | ctG | ctT | 82 | 87 | AY.44 | 0.000499 |
M | 56 | L56L | ctG | ctA | 4 | 87 | AY.44 | 0.000024 |
M | 56 | L56L | Ctg | Ttg | 1 | 87 | AY.44 | 0.000006 |
M | 56 | L56L | ctG | ctT | 35 | 79 | AY.3 | 0.000348 |
M | 56 | L56L | Ctg | Ttg | 29 | 79 | AY.3 | 0.000288 |
M | 56 | L56L | ctG | ctA | 15 | 79 | AY.3 | 0.000149 |
M | 56 | L56L | ctG | ctT | 77 | 77 | AK.1 | 0.974684 |
M | 56 | L56del | CTG | --- | 59 | 59 | All | 0.000011 |
M | 56 | L56L | ctG | ctT | 46 | 52 | AY.102 | 0.00122 |
M | 56 | L56L | Ctg | Ttg | 4 | 52 | AY.102 | 0.000106 |
M | 56 | L56L | ctG | ctA | 2 | 52 | AY.102 | 0.000053 |
M | 56 | L56L | Ctg | Ttg | 42 | 50 | AY.26 | 0.001189 |
M | 56 | L56L | ctG | ctT | 8 | 50 | AY.26 | 0.000226 |
M | 56 | L56L | ctG | ctA | 20 | 41 | AY.29 | 0.000315 |
M | 56 | L56L | ctG | ctT | 15 | 41 | AY.29 | 0.000237 |
M | 56 | L56L | ctG | ctC | 5 | 41 | AY.29 | 0.000079 |
M | 56 | L56L | Ctg | Ttg | 1 | 41 | AY.29 | 0.000016 |
M | 56 | L56L | ctG | ctT | 39 | 39 | AY.34 | 0.003782 |
M | 56 | L56L | ctG | ctT | 38 | 38 | AY.98.1 | 0.00184 |
M | 56 | L56L | ctG | ctT | 35 | 38 | B.1.429 | 0.000824 |
M | 56 | L56L | Ctg | Ttg | 2 | 38 | B.1.429 | 0.000047 |
M | 56 | L56L | ctG | ctA | 1 | 38 | B.1.429 | 0.000024 |
M | 56 | L56L | ctG | ctT | 37 | 37 | B.1.369.1 | 1 |
M | 56 | L56del | CTG | --- | 36 | 36 | B.1.177.21 | 0.002753 |
M | 56 | L56L | ctG | ctT | 36 | 36 | B.1.381 | 0.28125 |
M | 56 | L56L | ctG | ctT | 35 | 35 | AY.53 | 0.010063 |
M | 56 | L56L | ctG | ctT | 32 | 32 | B.1.509 | 0.027706 |
M | 56 | L56L | ctG | ctT | 32 | 32 | B.1.637 | 0.002338 |
M | 56 | L56L | ctG | ctT | 20 | 29 | AY.39 | 0.000494 |
M | 56 | L56L | Ctg | Ttg | 7 | 29 | AY.39 | 0.000173 |
M | 56 | L56L | ctG | ctA | 2 | 29 | AY.39 | 0.000049 |
M | 56 | L56L | ctG | ctT | 25 | 27 | B.1.526 | 0.000588 |
M | 56 | L56L | ctG | ctA | 2 | 27 | B.1.526 | 0.000047 |
M | 56 | L56L | ctG | ctT | 25 | 25 | B.1.36 | 0.003648 |
M | 56 | L56L | ctG | ctT | 24 | 24 | AE.6 | 0.923077 |
M | 56 | L56L | ctG | ctT | 14 | 24 | AY.100 | 0.000644 |
M | 56 | L56L | Ctg | Ttg | 8 | 24 | AY.100 | 0.000368 |
M | 56 | L56L | ctG | ctA | 2 | 24 | AY.100 | 0.000092 |
M | 56 | L56L | ctG | ctA | 22 | 24 | AY.7.1 | 0.002479 |
M | 56 | L56L | Ctg | Ttg | 2 | 24 | AY.7.1 | 0.000225 |
M | 56 | L56L | ctG | ctT | 24 | 24 | B.1.258.17 | 0.002495 |
M | 56 | L56L | ctG | ctT | 23 | 23 | B.1.1.294 | 0.029114 |
M | 56 | L56L | ctG | ctA | 22 | 22 | AA.3 | 0.594595 |
M | 56 | L56L | ctG | ctT | 17 | 22 | AY.23 | 0.001186 |
M | 56 | L56L | Ctg | Ttg | 4 | 22 | AY.23 | 0.000279 |
M | 56 | L56L | ctG | ctA | 1 | 22 | AY.23 | 0.00007 |
M | 56 | L56L | ctG | ctT | 16 | 22 | AY.46 | 0.001665 |
M | 56 | L56L | Ctg | Ttg | 5 | 22 | AY.46 | 0.00052 |
M | 56 | L56L | ctG | ctA | 1 | 22 | AY.46 | 0.000104 |
M | 56 | L56L | ctG | ctT | 20 | 22 | B.1.1.519 | 0.000794 |
M | 56 | L56L | Ctg | Ttg | 2 | 22 | B.1.1.519 | 0.000079 |
M | 56 | L56L | ctG | ctT | 22 | 22 | B.1.36.29 | 0.011381 |
M | 56 | L56L | ctG | ctT | 21 | 21 | B.1.575 | 0.006371 |
M | 56 | L56L | ctG | ctT | 15 | 20 | AY.119 | 0.00053 |
M | 56 | L56L | Ctg | Ttg | 4 | 20 | AY.119 | 0.000141 |
M | 56 | L56L | ctG | ctA | 1 | 20 | AY.119 | 0.000035 |
M | 56 | L56L | Ctg | Ttg | 10 | 20 | AY.47 | 0.000311 |
M | 56 | L56L | ctG | ctT | 8 | 20 | AY.47 | 0.000249 |
M | 56 | L56L | ctG | ctA | 2 | 20 | AY.47 | 0.000062 |
M | 56 | L56L | ctG | ctT | 20 | 20 | B.1.234 | 0.002639 |
M | 56 | L56L | ctG | ctT | 16 | 18 | AY.4.2 | 0.000347 |
M | 56 | L56L | ctG | ctA | 2 | 18 | AY.4.2 | 0.000043 |
M | 56 | L56L | ctG | ctT | 18 | 18 | AY.42 | 0.000724 |
M | 56 | L56L | ctG | ctT | 13 | 16 | AY.101 | 0.006376 |
M | 56 | L56L | ctG | ctA | 3 | 16 | AY.101 | 0.001471 |
M | 56 | L56L | ctG | ctT | 13 | 16 | AY.20 | 0.000505 |
M | 56 | L56L | ctG | ctA | 3 | 16 | AY.20 | 0.000117 |
M | 56 | L56L | ctG | ctT | 16 | 16 | B.1.126 | 0.020408 |
M | 56 | L56L | ctG | ctT | 12 | 15 | AY.116.1 | 0.003737 |
M | 56 | L56L | Ctg | Ttg | 3 | 15 | AY.116.1 | 0.000934 |
M | 56 | L56L | ctG | ctT | 15 | 15 | AY.121 | 0.00203 |
M | 56 | L56L | ctG | ctT | 15 | 15 | AY.33 | 0.001002 |
M | 56 | L56L | ctG | ctA | 13 | 15 | AY.59 | 0.006886 |
M | 56 | L56L | ctG | ctT | 2 | 15 | AY.59 | 0.001059 |
M | 56 | L56L | ctG | ctT | 15 | 15 | B.1.1.28 | 0.004669 |
M | 56 | L56L | ctG | ctT | 15 | 15 | B.1.497 | 0.004721 |
M | 56 | L56L | ctG | ctT | 15 | 15 | C.34 | 0.555556 |
M | 56 | L56L | ctG | ctT | 12 | 14 | AY.6 | 0.000494 |
M | 56 | L56L | Ctg | Ttg | 2 | 14 | AY.6 | 0.000082 |
M | 56 | L56L | ctG | ctT | 9 | 13 | AY.113 | 0.001282 |
M | 56 | L56L | Ctg | Ttg | 4 | 13 | AY.113 | 0.00057 |
M | 56 | L56L | ctG | ctT | 10 | 13 | AY.120 | 0.000372 |
M | 56 | L56L | Ctg | Ttg | 2 | 13 | AY.120 | 0.000074 |
M | 56 | L56L | ctG | ctA | 1 | 13 | AY.120 | 0.000037 |
M | 56 | L56L | ctG | ctT | 13 | 13 | R.1 | 0.00117 |
M | 56 | L56L | ctG | ctT | 12 | 12 | AY.36 | 0.001779 |
M | 56 | L56L | ctG | ctT | 11 | 11 | AY.39.1 | 0.000436 |
M | 56 | L56L | ctG | ctT | 11 | 11 | AY.99.2 | 0.001014 |
M | 56 | L56L | ctG | ctT | 11 | 11 | B.1.1.219 | 0.055 |
M | 56 | L56L | ctG | ctT | 11 | 11 | B.1.221 | 0.000781 |
M | 56 | L56L | ctG | ctT | 10 | 10 | B.23 | 0.02924 |
M | 56 | L56L | ctG | ctT | 10 | 10 | B.28 | 0.032787 |
M | 56 | L56L | ctG | ctT | 10 | 10 | P.1.14 | 0.000478 |
M | 56 | L56M | Ctg | Atg | 9 | 9 | All | 0.000002 |
M | 56 | L56L | ctG | ctT | 7 | 9 | B.1.160 | 0.000218 |
M | 56 | L56L | ctG | ctA | 2 | 9 | B.1.160 | 0.000062 |
M | 56 | L56L | ctG | ctT | 8 | 9 | B.1.189 | 0.034335 |
M | 56 | L56L | ctG | ctA | 1 | 9 | B.1.189 | 0.004292 |
M | 56 | L56L | ctG | ctT | 9 | 9 | B.1.232 | 0.004836 |
M | 56 | L56L | ctG | ctT | 5 | 9 | B.1.596 | 0.000436 |
M | 56 | L56L | ctG | ctA | 3 | 9 | B.1.596 | 0.000261 |
M | 56 | L56L | Ctg | Ttg | 1 | 9 | B.1.596 | 0.000087 |
M | 56 | L56L | ctG | ctT | 9 | 9 | P.1.1 | 0.002859 |
M | 56 | L56F | CtG | TtT | 8 | 8 | All | 0.000002 |
M | 56 | L56L | ctG | ctT | 5 | 8 | AY.3.1 | 0.000426 |
M | 56 | L56L | ctG | ctA | 2 | 8 | AY.3.1 | 0.000171 |
M | 56 | L56L | Ctg | Ttg | 1 | 8 | AY.3.1 | 0.000085 |
M | 56 | L56L | ctG | ctT | 6 | 8 | AY.75.1 | 0.001082 |
M | 56 | L56L | Ctg | Ttg | 2 | 8 | AY.75.1 | 0.000361 |
M | 56 | L56L | ctG | ctT | 7 | 8 | AY.9.2 | 0.000257 |
M | 56 | L56L | ctG | ctC | 1 | 8 | AY.9.2 | 0.000037 |
M | 56 | L56L | ctG | ctT | 8 | 8 | B.1.1.214 | 0.000444 |
M | 56 | L56del | CTG | --- | 8 | 8 | B.1.1.7 | 0.000007 |
M | 56 | L56L | ctG | ctT | 8 | 8 | B.1.177.26 | 0.055944 |
M | 56 | L56F | CtG | TtT | 8 | 8 | B.1.369 | 0.002282 |
M | 56 | L56L | ctG | ctT | 7 | 7 | AY.117 | 0.000592 |
M | 56 | L56L | ctG | ctT | 5 | 7 | B.1.427 | 0.000252 |
M | 56 | L56L | ctG | ctC | 1 | 7 | B.1.427 | 0.00005 |
M | 56 | L56L | ctG | ctA | 1 | 7 | B.1.427 | 0.00005 |
M | 56 | L56L | Ctg | Ttg | 7 | 7 | B.1.558 | 0.031963 |
M | 56 | L56L | ctG | ctT | 7 | 7 | P.1.7 | 0.002235 |
M | 56 | L56L | ctG | ctT | 5 | 6 | AY.118 | 0.000313 |
M | 56 | L56L | Ctg | Ttg | 1 | 6 | AY.118 | 0.000063 |
M | 56 | L56L | ctG | ctT | 6 | 6 | AY.45 | 0.00073 |
M | 56 | L56L | ctG | ctT | 6 | 6 | B.1.524 | 0.008439 |
M | 56 | L56L | ctG | ctT | 6 | 6 | B.1.525 | 0.000679 |
M | 56 | L56L | ctG | ctT | 6 | 6 | P.1.17 | 0.000971 |
M | 56 | L56L | ctG | ctT | 6 | 6 | P.3 | 0.009569 |
M | 56 | L56Q | cTg | cAg | 5 | 5 | All | 0.000001 |
M | 56 | L56P | cTG | cCA | 3 | 5 | All | 0.000001 |
M | 56 | L56P | cTg | cCg | 2 | 5 | All | 0 |
M | 56 | L56L | ctG | ctT | 5 | 5 | AY.28 | 0.009452 |
M | 56 | L56L | ctG | ctT | 5 | 5 | AY.41 | 0.00147 |
M | 56 | L56L | ctG | ctT | 5 | 5 | AY.46.6 | 0.000361 |
M | 56 | L56L | ctG | ctT | 4 | 5 | AY.9.1 | 0.000335 |
M | 56 | L56L | Ctg | Ttg | 1 | 5 | AY.9.1 | 0.000084 |
M | 56 | L56L | ctG | ctT | 4 | 5 | B | 0.000511 |
M | 56 | L56L | Ctg | Ttg | 1 | 5 | B | 0.000128 |
M | 56 | L56L | ctG | ctT | 5 | 5 | B.1.1.222 | 0.00102 |
M | 56 | L56L | ctG | ctT | 5 | 5 | B.1.1.306 | 0.002192 |
M | 56 | L56L | ctG | ctT | 5 | 5 | B.1.177.62 | 0.005959 |
M | 56 | L56L | ctG | ctC | 5 | 5 | B.1.229 | 0.048544 |
M | 56 | L56L | ctG | ctA | 4 | 5 | B.1.351.2 | 0.00121 |
M | 56 | L56L | ctG | ctT | 1 | 5 | B.1.351.2 | 0.000303 |
M | 56 | L56L | ctG | ctT | 5 | 5 | B.1.36.8 | 0.005 |
M | 56 | L56L | ctG | ctT | 5 | 5 | B.1.609 | 0.002397 |
M | 56 | L56L | ctG | ctT | 3 | 5 | B.1.621 | 0.000266 |
M | 56 | L56L | ctG | ctA | 2 | 5 | B.1.621 | 0.000177 |
M | 56 | L56L | ctG | ctC | 4 | 5 | P.1.13 | 0.003594 |
M | 56 | L56L | Ctg | Ttg | 1 | 5 | P.1.13 | 0.000898 |
M | 56 | L56L | ctG | ctT | 5 | 5 | Q.4 | 0.002274 |
M | 56 | L56V | CtG | GtA | 2 | 4 | 0.111111 | |
M | 56 | L56V | Ctg | Gtg | 2 | 4 | 0.111111 | |
M | 56 | L56del2 | cTG | c-- | 4 | 4 | All | 0.000001 |
M | 56 | L56del1 | ctG | ct- | 3 | 4 | All | 0.000001 |
M | 56 | L56V | CtG | GtA | 2 | 4 | All | 0 |
M | 56 | L56V | Ctg | Gtg | 2 | 4 | All | 0 |
M | 56 | L56del1 | CtG | -tT | 1 | 4 | All | 0 |
M | 56 | L56L | ctG | ctA | 4 | 4 | AY.120.1 | 0.001284 |
M | 56 | L56L | ctG | ctT | 2 | 4 | AY.14 | 0.000176 |
M | 56 | L56L | Ctg | Ttg | 1 | 4 | AY.14 | 0.000088 |
M | 56 | L56L | ctG | ctA | 1 | 4 | AY.14 | 0.000088 |
M | 56 | L56L | ctG | ctT | 3 | 4 | AY.16.1 | 0.00141 |
M | 56 | L56L | ctG | ctA | 1 | 4 | AY.16.1 | 0.00047 |
M | 56 | L56L | ctG | ctT | 3 | 4 | AY.9 | 0.000203 |
M | 56 | L56L | Ctg | Ttg | 1 | 4 | AY.9 | 0.000068 |
M | 56 | L56L | ctG | ctT | 4 | 4 | AY.98 | 0.000316 |
M | 56 | L56M | Ctg | Atg | 4 | 4 | B.1.1.28 | 0.001245 |
M | 56 | L56L | ctG | ctT | 2 | 4 | B.1.241 | 0.001623 |
M | 56 | L56L | Ctg | Ttg | 2 | 4 | B.1.241 | 0.001623 |
M | 56 | L56L | ctG | ctT | 2 | 4 | C.37 | 0.000232 |
M | 56 | L56L | ctG | ctA | 1 | 4 | C.37 | 0.000116 |
M | 56 | L56L | ctG | ctC | 1 | 4 | C.37 | 0.000116 |
M | 56 | L56L | ctG | ctT | 2 | 3 | AY.106 | 0.00067 |
M | 56 | L56L | ctG | ctC | 1 | 3 | AY.106 | 0.000335 |
M | 56 | L56L | ctG | ctA | 3 | 3 | AY.2 | 0.001068 |
M | 56 | L56L | ctG | ctT | 2 | 3 | AY.29.1 | 0.000441 |
M | 56 | L56L | ctG | ctA | 1 | 3 | AY.29.1 | 0.000221 |
M | 56 | L56L | ctG | ctT | 3 | 3 | AY.30 | 0.001187 |
M | 56 | L56L | ctG | ctT | 3 | 3 | AY.38 | 0.001498 |
M | 56 | L56Q | cTg | cAg | 3 | 3 | AY.4 | 0.000005 |
M | 56 | L56L | Ctg | Ttg | 2 | 3 | AY.4.4 | 0.000818 |
M | 56 | L56L | ctG | ctT | 1 | 3 | AY.4.4 | 0.000409 |
M | 56 | L56L | ctG | ctT | 3 | 3 | AY.4.5 | 0.000322 |
M | 56 | L56L | ctG | ctC | 2 | 3 | AY.57 | 0.001312 |
M | 56 | L56L | ctG | ctT | 1 | 3 | AY.57 | 0.000656 |
M | 56 | L56L | ctG | ctT | 2 | 3 | AY.62 | 0.000871 |
M | 56 | L56L | ctG | ctA | 1 | 3 | AY.62 | 0.000436 |
M | 56 | L56L | ctG | ctT | 2 | 3 | AY.74 | 0.000231 |
M | 56 | L56L | Ctg | Ttg | 1 | 3 | AY.74 | 0.000116 |
M | 56 | L56L | ctG | ctT | 2 | 3 | AY.85 | 0.000854 |
M | 56 | L56L | ctG | ctA | 1 | 3 | AY.85 | 0.000427 |
M | 56 | L56L | ctG | ctC | 3 | 3 | B.1.1.50 | 0.002037 |
M | 56 | L56L | ctG | ctT | 3 | 3 | B.1.1.63 | 0.001157 |
M | 56 | L56L | ctG | ctT | 3 | 3 | B.1.177.37 | 0.081081 |
M | 56 | L56L | ctG | ctT | 2 | 3 | B.1.177.7 | 0.00033 |
M | 56 | L56L | ctG | ctA | 1 | 3 | B.1.177.7 | 0.000165 |
M | 56 | L56L | ctG | ctT | 3 | 3 | B.1.264 | 0.037037 |
M | 56 | L56L | ctG | ctT | 3 | 3 | B.1.576 | 0.00272 |
M | 56 | L56L | ctG | ctT | 3 | 3 | B.1.595 | 0.000783 |
M | 56 | L56L | ctG | ctT | 2 | 3 | C.36 | 0.001821 |
M | 56 | L56L | ctG | ctA | 1 | 3 | C.36 | 0.000911 |
M | 56 | L56L | Ctg | Ttg | 3 | 3 | P.1.12 | 0.001452 |
M | 56 | L56L | ctG | ctA | 2 | 2 | 0.111111 | |
M | 56 | L56del | CTG | --- | 2 | 2 | 0.111111 | |
M | 56 | L56L | ctG | ctT | 2 | 2 | A | 0.000774 |
M | 56 | L56L | ctG | ctA | 2 | 2 | A.28 | 0.005291 |
M | 56 | L56R | cTg | cGg | 2 | 2 | All | 0 |
M | 56 | L56L | Ctg | Ttg | 2 | 2 | AY.1 | 0.000791 |
M | 56 | L56L | Ctg | Ttg | 1 | 2 | AY.10 | 0.00053 |
M | 56 | L56L | ctG | ctT | 1 | 2 | AY.10 | 0.00053 |
M | 56 | L56L | ctG | ctT | 2 | 2 | AY.111 | 0.000366 |
M | 56 | L56L | ctG | ctT | 2 | 2 | AY.116 | 0.000574 |
M | 56 | L56P | cTG | cCA | 2 | 2 | AY.117 | 0.000169 |
M | 56 | L56L | ctG | ctT | 2 | 2 | AY.12 | 0.000632 |
M | 56 | L56L | ctG | ctT | 2 | 2 | AY.16 | 0.000759 |
M | 56 | L56L | ctG | ctA | 2 | 2 | AY.23.1 | 0.000835 |
M | 56 | L56L | ctG | ctT | 2 | 2 | AY.34.1 | 0.00102 |
M | 56 | L56del | CTG | --- | 2 | 2 | AY.43 | 0.000009 |
M | 56 | L56L | ctG | ctT | 2 | 2 | AY.46.3 | 0.001867 |
M | 56 | L56L | Ctg | Ttg | 2 | 2 | AY.49 | 0.00639 |
M | 56 | L56L | ctG | ctT | 2 | 2 | AY.5.4 | 0.000553 |
M | 56 | L56L | ctG | ctT | 2 | 2 | AY.54 | 0.000191 |
M | 56 | L56L | Ctg | Ttg | 1 | 2 | AY.75 | 0.000056 |
M | 56 | L56L | ctG | ctA | 1 | 2 | AY.75 | 0.000056 |
M | 56 | L56L | Ctg | Ttg | 2 | 2 | AY.87 | 0.001665 |
M | 56 | L56L | ctG | ctT | 2 | 2 | AY.95 | 0.001522 |
M | 56 | L56M | Ctg | Atg | 2 | 2 | B.1 | 0.000018 |
M | 56 | L56L | ctG | ctT | 2 | 2 | B.1.1.189 | 0.003026 |
M | 56 | L56L | ctG | ctT | 2 | 2 | B.1.1.198 | 0.002937 |
M | 56 | L56L | ctG | ctA | 1 | 2 | B.1.1.207 | 0.001182 |
M | 56 | L56L | ctG | ctT | 1 | 2 | B.1.1.207 | 0.001182 |
M | 56 | L56L | ctG | ctT | 2 | 2 | B.1.1.231 | 0.006192 |
M | 56 | L56L | ctG | ctT | 1 | 2 | B.1.1.311 | 0.000358 |
M | 56 | L56L | Ctg | Ttg | 1 | 2 | B.1.1.311 | 0.000358 |
M | 56 | L56L | ctG | ctT | 2 | 2 | B.1.1.312 | 0.003824 |
M | 56 | L56L | ctG | ctT | 2 | 2 | B.1.1.316 | 0.00185 |
M | 56 | L56L | ctG | ctA | 1 | 2 | B.1.1.318 | 0.000302 |
M | 56 | L56L | ctG | ctT | 1 | 2 | B.1.1.318 | 0.000302 |
M | 56 | L56L | ctG | ctT | 1 | 2 | B.1.1.33 | 0.000421 |
M | 56 | L56L | ctG | ctA | 1 | 2 | B.1.1.33 | 0.000421 |
M | 56 | L56L | ctG | ctT | 2 | 2 | B.1.1.39 | 0.001019 |
M | 56 | L56L | ctG | ctT | 2 | 2 | B.1.1.416 | 0.00181 |
M | 56 | L56L | ctG | ctT | 2 | 2 | B.1.1.517 | 0.013605 |
M | 56 | L56L | ctG | ctT | 2 | 2 | B.1.177.21 | 0.000153 |
M | 56 | L56L | ctG | ctT | 2 | 2 | B.1.177.73 | 0.001133 |
M | 56 | L56L | ctG | ctT | 2 | 2 | B.1.177.81 | 0.000379 |
M | 56 | L56L | ctG | ctT | 2 | 2 | B.1.195 | 0.01005 |
M | 56 | L56L | ctG | ctT | 2 | 2 | B.1.199 | 0.008264 |
M | 56 | L56L | ctG | ctT | 2 | 2 | B.1.264.1 | 0.095238 |
M | 56 | L56L | ctG | ctT | 2 | 2 | B.1.36.38 | 0.003284 |
M | 56 | L56L | ctG | ctT | 2 | 2 | B.1.367 | 0.001585 |
M | 56 | L56L | ctG | ctT | 2 | 2 | B.1.377 | 0.009132 |
M | 56 | L56L | ctG | ctT | 2 | 2 | B.1.438.1 | 0.000215 |
M | 56 | L56L | ctG | ctA | 1 | 2 | B.1.470 | 0.001404 |
M | 56 | L56L | ctG | ctT | 1 | 2 | B.1.470 | 0.001404 |
M | 56 | L56L | ctG | ctT | 2 | 2 | B.1.620 | 0.001892 |
M | 56 | L56L | ctG | ctT | 2 | 2 | B.1.621.1 | 0.001012 |
M | 56 | L56L | ctG | ctT | 2 | 2 | B.55 | 0.0059 |
M | 56 | L56L | ctG | ctT | 2 | 2 | D.2 | 0.00015 |
M | 56 | L56L | Ctg | Ttg | 1 | 2 | N.5 | 0.001767 |
M | 56 | L56L | ctG | ctT | 1 | 2 | N.5 | 0.001767 |
M | 56 | L56L | ctG | ctT | 2 | 2 | Q.8 | 0.00033 |
M | 56 | L56L | ctG | ctT | 1 | 1 | A.1 | 0.000282 |
M | 56 | L56L | ctG | ctT | 1 | 1 | A.5 | 0.001923 |
M | 56 | L56L | ctG | ctT | 1 | 1 | AG.1 | 0.066667 |
M | 56 | L56A | CTG | GCA | 1 | 1 | All | 0 |
M | 56 | L56W | CTg | TGg | 1 | 1 | All | 0 |
M | 56 | L56L | ctG | ctT | 1 | 1 | AY.104 | 0.001984 |
M | 56 | L56L | ctG | ctT | 1 | 1 | AY.110 | 0.000113 |
M | 56 | L56L | ctG | ctT | 1 | 1 | AY.114 | 0.000231 |
M | 56 | L56del | CTG | --- | 1 | 1 | AY.120 | 0.000037 |
M | 56 | L56L | ctG | ctT | 1 | 1 | AY.120.2 | 0.001285 |
M | 56 | L56M | Ctg | Atg | 1 | 1 | AY.20 | 0.000039 |
M | 56 | L56L | Ctg | Ttg | 1 | 1 | AY.22 | 0.002092 |
M | 56 | L56L | Ctg | Ttg | 1 | 1 | AY.24 | 0.000431 |
M | 56 | L56L | ctG | ctT | 1 | 1 | AY.27 | 0.000065 |
M | 56 | L56L | Ctg | Ttg | 1 | 1 | AY.32 | 0.000532 |
M | 56 | L56M | Ctg | Atg | 1 | 1 | AY.4 | 0.000002 |
M | 56 | L56L | ctG | ctT | 1 | 1 | AY.4.1 | 0.000737 |
M | 56 | L56A | CTG | GCA | 1 | 1 | AY.44 | 0.000006 |
M | 56 | L56L | ctG | ctT | 1 | 1 | AY.46.1 | 0.001027 |
M | 56 | L56L | ctG | ctT | 1 | 1 | AY.46.5 | 0.000198 |
M | 56 | L56L | ctG | ctA | 1 | 1 | AY.5.3 | 0.000337 |
M | 56 | L56L | ctG | ctA | 1 | 1 | AY.52 | 0.000814 |
M | 56 | L56L | ctG | ctT | 1 | 1 | AY.55 | 0.000917 |
M | 56 | L56L | Ctg | Ttg | 1 | 1 | AY.61 | 0.000105 |
M | 56 | L56L | ctG | ctT | 1 | 1 | AY.65 | 0.000533 |
M | 56 | L56L | ctG | ctT | 1 | 1 | AY.67 | 0.000464 |
M | 56 | L56del | CTG | --- | 1 | 1 | AY.68 | 0.000274 |
M | 56 | L56L | ctG | ctT | 1 | 1 | AY.68 | 0.000274 |
M | 56 | L56L | ctG | ctT | 1 | 1 | AY.71 | 0.000475 |
M | 56 | L56L | ctG | ctT | 1 | 1 | AY.79 | 0.001211 |
M | 56 | L56L | ctG | ctT | 1 | 1 | AY.8 | 0.000606 |
M | 56 | L56L | Ctg | Ttg | 1 | 1 | AY.84 | 0.000437 |
M | 56 | L56del1 | CtG | -tT | 1 | 1 | AY.84 | 0.000437 |
M | 56 | L56L | ctG | ctT | 1 | 1 | AY.92 | 0.000287 |
M | 56 | L56L | ctG | ctT | 1 | 1 | AY.94 | 0.000443 |
M | 56 | L56L | ctG | ctT | 1 | 1 | AY.99.1 | 0.001553 |
M | 56 | L56R | cTg | cGg | 1 | 1 | B.1 | 0.000009 |
M | 56 | L56del | CTG | --- | 1 | 1 | B.1 | 0.000009 |
M | 56 | L56del2 | cTG | c-- | 1 | 1 | B.1 | 0.000009 |
M | 56 | L56Q | cTg | cAg | 1 | 1 | B.1 | 0.000009 |
M | 56 | L56del1 | ctG | ct- | 1 | 1 | B.1.1 | 0.000018 |
M | 56 | L56L | ctG | ctT | 1 | 1 | B.1.1.1 | 0.000327 |
M | 56 | L56L | ctG | ctT | 1 | 1 | B.1.1.10 | 0.001115 |
M | 56 | L56L | ctG | ctT | 1 | 1 | B.1.1.125 | 0.010204 |
M | 56 | L56L | ctG | ctT | 1 | 1 | B.1.1.157 | 0.000913 |
M | 56 | L56L | ctG | ctT | 1 | 1 | B.1.1.186 | 0.003436 |
M | 56 | L56L | ctG | ctT | 1 | 1 | B.1.1.216 | 0.00089 |
M | 56 | L56del2 | cTG | c-- | 1 | 1 | B.1.1.220 | 0.001859 |
M | 56 | L56L | ctG | ctT | 1 | 1 | B.1.1.301 | 0.001179 |
M | 56 | L56L | ctG | ctT | 1 | 1 | B.1.1.304 | 0.002809 |
M | 56 | L56L | ctG | ctT | 1 | 1 | B.1.1.322 | 0.008772 |
M | 56 | L56L | ctG | ctT | 1 | 1 | B.1.1.326 | 0.001761 |
M | 56 | L56del1 | ctG | ct- | 1 | 1 | B.1.1.369 | 0.000446 |
M | 56 | L56L | ctG | ctT | 1 | 1 | B.1.1.37 | 0.000193 |
M | 56 | L56del | CTG | --- | 1 | 1 | B.1.1.372 | 0.000689 |
M | 56 | L56L | ctG | ctA | 1 | 1 | B.1.1.377 | 0.001381 |
M | 56 | L56del2 | cTG | c-- | 1 | 1 | B.1.1.409 | 0.002833 |
M | 56 | L56L | ctG | ctT | 1 | 1 | B.1.1.432 | 0.001266 |
M | 56 | L56L | ctG | ctT | 1 | 1 | B.1.1.448 | 0.002033 |
M | 56 | L56del2 | cTG | c-- | 1 | 1 | B.1.1.7 | 0.000001 |
M | 56 | L56L | ctG | ctT | 1 | 1 | B.1.1.70 | 0.000341 |
M | 56 | L56L | Ctg | Ttg | 1 | 1 | B.1.1.77 | 0.041667 |
M | 56 | L56P | cTg | cCg | 1 | 1 | B.1.110.3 | 0.000718 |
M | 56 | L56L | ctG | ctA | 1 | 1 | B.1.110.3 | 0.000718 |
M | 56 | L56L | ctG | ctT | 1 | 1 | B.1.131 | 0.008772 |
M | 56 | L56del | CTG | --- | 1 | 1 | B.1.161 | 0.017241 |
M | 56 | L56L | ctG | ctA | 1 | 1 | B.1.177.15 | 0.000631 |
M | 56 | L56W | CTg | TGg | 1 | 1 | B.1.177.21 | 0.000076 |
M | 56 | L56L | ctG | ctT | 1 | 1 | B.1.177.45 | 0.000381 |
M | 56 | L56L | ctG | ctT | 1 | 1 | B.1.177.53 | 0.002392 |
M | 56 | L56L | ctG | ctT | 1 | 1 | B.1.177.6 | 0.000977 |
M | 56 | L56L | ctG | ctT | 1 | 1 | B.1.177.86 | 0.000183 |
M | 56 | L56L | ctG | ctT | 1 | 1 | B.1.181 | 0.019608 |
M | 56 | L56P | cTg | cCg | 1 | 1 | B.1.2 | 0.000009 |
M | 56 | L56del1 | ctG | ct- | 1 | 1 | B.1.2 | 0.000009 |
M | 56 | L56L | ctG | ctT | 1 | 1 | B.1.206 | 0.000816 |
M | 56 | L56L | ctG | ctT | 1 | 1 | B.1.245 | 0.03125 |
M | 56 | L56del | CTG | --- | 1 | 1 | B.1.258.11 | 0.000396 |
M | 56 | L56L | ctG | ctT | 1 | 1 | B.1.279 | 0.000514 |
M | 56 | L56L | ctG | ctT | 1 | 1 | B.1.291 | 0.019231 |
M | 56 | L56L | ctG | ctT | 1 | 1 | B.1.298 | 0.002114 |
M | 56 | L56L | ctG | ctT | 1 | 1 | B.1.3 | 0.002618 |
M | 56 | L56L | ctG | ctT | 1 | 1 | B.1.351.5 | 0.0006 |
M | 56 | L56Q | cTg | cAg | 1 | 1 | B.1.36.17 | 0.000494 |
M | 56 | L56L | Ctg | Ttg | 1 | 1 | B.1.36.39 | 0.002217 |
M | 56 | L56L | ctG | ctT | 1 | 1 | B.1.411 | 0.003704 |
M | 56 | L56L | ctG | ctT | 1 | 1 | B.1.416 | 0.001269 |
M | 56 | L56L | ctG | ctT | 1 | 1 | B.1.420 | 0.010417 |
M | 56 | L56L | ctG | ctT | 1 | 1 | B.1.432 | 0.011236 |
M | 56 | L56L | ctG | ctT | 1 | 1 | B.1.448 | 0.002625 |
M | 56 | L56L | ctG | ctT | 1 | 1 | B.1.466.2 | 0.000391 |
M | 56 | L56L | ctG | ctT | 1 | 1 | B.1.469 | 0.00361 |
M | 56 | L56L | ctG | ctT | 1 | 1 | B.1.471 | 0.002732 |
M | 56 | L56M | Ctg | Atg | 1 | 1 | B.1.526 | 0.000024 |
M | 56 | L56L | ctG | ctT | 1 | 1 | B.1.527 | 0.003704 |
M | 56 | L56L | ctG | ctT | 1 | 1 | B.1.538 | 0.008065 |
M | 56 | L56L | ctG | ctT | 1 | 1 | B.1.572 | 0.025 |
M | 56 | L56del | CTG | --- | 1 | 1 | B.1.577 | 0.000687 |
M | 56 | L56L | ctG | ctT | 1 | 1 | B.1.605 | 0.005952 |
M | 56 | L56L | ctG | ctT | 1 | 1 | B.1.612 | 0.002653 |
M | 56 | L56del | CTG | --- | 1 | 1 | B.1.617.2 | 0.000004 |
M | 56 | L56P | cTG | cCA | 1 | 1 | B.1.617.2 | 0.000004 |
M | 56 | L56L | ctG | ctT | 1 | 1 | B.1.618 | 0.004032 |
M | 56 | L56L | ctG | ctT | 1 | 1 | B.1.619.1 | 0.000641 |
M | 56 | L56del | CTG | --- | 1 | 1 | B.1.627 | 0.00202 |
M | 56 | L56L | ctG | ctT | 1 | 1 | B.1.627 | 0.00202 |
M | 56 | L56L | ctG | ctT | 1 | 1 | B.1.88.1 | 0.004808 |
M | 56 | L56L | ctG | ctT | 1 | 1 | B.13 | 0.045455 |
M | 56 | L56L | ctG | ctT | 1 | 1 | B.3 | 0.000831 |
M | 56 | L56R | cTg | cGg | 1 | 1 | B.40 | 0.000364 |
M | 56 | L56L | Ctg | Ttg | 1 | 1 | B.6.6 | 0.000889 |
M | 56 | L56L | ctG | ctT | 1 | 1 | C.1 | 0.002392 |
M | 56 | L56L | ctG | ctT | 1 | 1 | C.18 | 0.002591 |
M | 56 | L56L | ctG | ctT | 1 | 1 | N.9 | 0.005952 |
M | 56 | L56del | CTG | --- | 1 | 1 | P.1 | 0.000016 |
M | 56 | L56L | ctG | ctT | 1 | 1 | P.1.10 | 0.000269 |
M | 56 | L56L | ctG | ctT | 1 | 1 | P.1.11 | 0.010204 |
M | 56 | L56del | CTG | --- | 1 | 1 | P.1.15 | 0.000232 |
M | 56 | L56L | ctG | ctA | 1 | 1 | P.2 | 0.000187 |
M | 56 | L56L | ctG | ctT | 1 | 1 | P.5 | 0.013699 |
M | 56 | L56L | ctG | ctT | 1 | 1 | P.7 | 0.004367 |
M | 56 | L56L | Ctg | Ttg | 1 | 1 | W.4 | 0.001351 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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