CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = M : CodonNum = 53 & Codon = ttT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
M	53	F53F		syn	ttC	ttT	106924	106924	1	26679-26681

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
M	53	F53F	ttC	ttT	106924	106924	All	0.02045
M	53	F53F	ttC	ttT	42220	42220	B.1.429	0.993388
M	53	F53F	ttC	ttT	19701	19701	B.1.427	0.994849
M	53	F53F	ttC	ttT	9521	9521	AY.34	0.923204
M	53	F53F	ttC	ttT	4617	4617	B.1.1.7	0.004133
M	53	F53F	ttC	ttT	4564	4564	B.1.617.1	0.588599
M	53	F53F	ttC	ttT	2042	2042	AY.4	0.003178
M	53	F53F	ttC	ttT	1967	1967	A.2.5	0.981537
M	53	F53F	ttC	ttT	1819	1819	B.1	0.016661
M	53	F53F	ttC	ttT	1344	1344	B.1.526	0.03159
M	53	F53F	ttC	ttT	948	948	B.1.617.2	0.00357
M	53	F53F	ttC	ttT	901	901	AY.34.1	0.459459
M	53	F53F	ttC	ttT	863	863	B.1.2	0.007599
M	53	F53F	ttC	ttT	838	838	AY.103	0.005203
M	53	F53F	ttC	ttT	814	814	AY.43	0.003606
M	53	F53F	ttC	ttT	694	694	AY.74	0.080259
M	53	F53F	ttC	ttT	674	674	AY.102	0.01787
M	53	F53F	ttC	ttT	625	625	A.2.5.2	0.982704
M	53	F53F	ttC	ttT	538	538	B.1.1.220	1
M	53	F53F	ttC	ttT	454	454	AY.44	0.002763
M	53	F53F	ttC	ttT	431	431	B.1.470	0.605337
M	53	F53F	ttC	ttT	415	415	AY.25	0.002496
M	53	F53F	ttC	ttT	378	378	AY.26	0.010701
M	53	F53F	ttC	ttT	296	296	AY.39	0.007315
M	53	F53F	ttC	ttT	287	287	B.1.634	0.982877
M	53	F53F	ttC	ttT	275	275	B.1.177	0.003621
M	53	F53F	ttC	ttT	258	258	B.1.1	0.00468
M	53	F53F	ttC	ttT	255	255	AY.60	0.239212
M	53	F53F	ttC	ttT	253	253	AY.33	0.016895
M	53	F53F	ttC	ttT	251	251	AY.64	0.149405
M	53	F53F	ttC	ttT	248	248	P.1	0.003907
M	53	F53F	ttC	ttT	241	241	AY.3	0.002397
M	53	F53F	ttC	ttT	226	226	B.1.1.258	0.736156
M	53	F53F	ttC	ttT	225	225	B.1.1.176	0.098858
M	53	F53F	ttC	ttT	212	212	B.1.438.1	0.022739
M	53	F53F	ttC	ttT	209	209	AY.119	0.007379
M	53	F53F	ttC	ttT	207	207	A.2.5.1	0.995192
M	53	F53F	ttC	ttT	202	202	AY.29	0.003186
M	53	F53F	ttC	ttT	184	184	AY.27	0.011909
M	53	F53F	ttC	ttT	174	174	B.1.258.3	0.291457
M	53	F53F	ttC	ttT	170	170	B.1.232	0.091349
M	53	F53F	ttC	ttT	165	165	B.1.1.138	1
M	53	F53F	ttC	ttT	158	158	B.1.1.519	0.006274
M	53	F53F	ttC	ttT	146	146	AY.5	0.003015
M	53	F53F	ttC	ttT	129	129	AY.47	0.004013
M	53	F53F	ttC	ttT	112	112	AY.98	0.008847
M	53	F53F	ttC	ttT	112	112	B.1.621	0.009914
M	53	F53F	ttC	ttT	111	111	C.37	0.012883
M	53	F53F	ttC	ttT	103	103	B.1.1.526	0.365248
M	53	F53F	ttC	ttT	97	97	B.1.564.1	0.152997
M	53	F53F	ttC	ttT	96	96	B.1.221	0.006819
M	53	F53F	ttC	ttT	93	93	B.1.160	0.0029
M	53	F53F	ttC	ttT	91	91	C.36	0.082878
M	53	F53F	ttC	ttT	89	89	B.1.1.141	0.179074
M	53	F53F	ttC	ttT	89	89	B.1.1.25	0.050597
M	53	F53F	ttC	ttT	88	88	A.2.5.3	0.907216
M	53	F53F	ttC	ttT	88	88	AY.120	0.003272
M	53	F53F	ttC	ttT	84	84	B.1.1.1	0.027442
M	53	F53F	ttC	ttT	83	83	B.1.429.1	1
M	53	F53F	ttC	ttT	81	81	A.2	0.053607
M	53	F53F	ttC	ttT	81	81	AY.4.2	0.001757
M	53	F53F	ttC	ttT	73	73	AY.39.1	0.002892
M	53	F53F	ttC	ttT	71	71	AY.20	0.002759
M	53	F53F	ttC	ttT	66	66	AY.58	0.059891
M	53	F53F	ttC	ttT	66	66	B.1.1.329	0.253846
M	53	F53F	ttC	ttT	61	61	B.1.351	0.001813
M	53	F53F	ttC	ttT	59	59	AY.42	0.002374
M	53	F53F	ttC	ttT	59	59	C.35	0.045666
M	53	F53F	ttC	ttT	58	58	B.1.1.28	0.018052
M	53	F53F	ttC	ttT	57	57	B.1.311	0.015651
M	53	F53F	ttC	ttT	57	57	B.1.635	1
M	53	F53F	ttC	ttT	56	56	AY.46.2	0.035578
M	53	F53F	ttC	ttT	53	53	B.1.1.222	0.010812
M	53	F53F	ttC	ttT	52	52	B.1.1.58	0.27957
M	53	F53F	ttC	ttT	51	51	AY.9.2	0.001873
M	53	F53F	ttC	ttT	51	51	B.1.234	0.006729
M	53	F53F	ttC	ttT	51	51	B.1.258	0.003394
M	53	F53F	ttC	ttT	47	47	B.1.596	0.004096
M	53	F53F	ttC	ttT	44	44	B.1.517	0.018787
M	53	F53F	ttC	ttT	43	43	B.1.391	0.048478
M	53	F53F	ttC	ttT	42	42	AY.117	0.00355
M	53	F53F	ttC	ttT	42	42	AY.76	0.202899
M	53	F53F	ttC	ttT	42	42	B.1.441	0.403846
M	53	F53F	ttC	ttT	41	41	AY.4.5	0.004407
M	53	F53F	ttC	ttT	41	41	AY.6	0.001686
M	53	F53F	ttC	ttT	40	40	AY.75	0.002241
M	53	F53F	ttC	ttT	39	39	AY.100	0.001794
M	53	F53F	ttC	ttT	39	39	AY.68	0.010676
M	53	F53F	ttC	ttT	39	39	P.1.7	0.012452
M	53	F53F	ttC	ttT	38	38	AY.3.1	0.00324
M	53	F53F	ttC	ttT	38	38	B.1.36.29	0.019659
M	53	F53F	ttC	ttT	37	37	B.1.177.75	0.038502
M	53	F53F	ttC	ttT	36	36	B.1.324	0.057785
M	53	F53F	ttC	ttT	36	36	B.1.609	0.017258
M	53	F53F	ttC	ttT	35	35	B.1.243	0.002435
M	53	F53F	ttC	ttT	34	34	B.1.576	0.030825
M	53	F53F	ttC	ttT	34	34	B.1.595	0.008873
M	53	F53F	ttC	ttT	33	33	B.1.1.160	0.785714
M	53	F53F	ttC	ttT	33	33	B.1.1.219	0.165
M	53	F53F	ttC	ttT	33	33	B.1.239	0.040293
M	53	F53F	ttC	ttT	32	32	AY.23	0.002232
M	53	F53F	ttC	ttT	31	31	B.1.340	0.133047
M	53	F53F	ttC	ttT	30	30	AY.118	0.001879
M	53	F53F	ttC	ttT	29	29	AY.14	0.002552
M	53	F53F	ttC	ttT	29	29	B	0.003707
M	53	F53F	ttC	ttT	28	28	AY.85	0.011961
M	53	F53F	ttC	ttT	26	26	AY.46.4	0.004277
M	53	F53F	ttC	ttT	26	26	AY.91	0.018992
M	53	F53F	ttC	ttT	25	25	AY.61	0.002619
M	53	F53F	ttC	ttT	25	25	B.1.561	0.009925
M	53	F53F	ttC	ttT	24	24	AY.45	0.00292
M	53	F53F	ttC	ttT	24	24	B.1.177.68	0.363636
M	53	F53F	ttC	ttT	24	24	B.1.36	0.003502
M	53	F53F	ttC	ttT	24	24	P.2	0.004479
M	53	F53F	ttC	ttT	23	23	AY.36	0.003409
M	53	F53F	ttC	ttT	23	23	AY.46	0.002394
M	53	F53F	ttC	ttT	23	23	B.1.1.216	0.020481
M	53	F53F	ttC	ttT	23	23	B.1.521	0.114428
M	53	F53F	ttC	ttT	23	23	B.1.578	0.410714
M	53	F53F	ttC	ttT	22	22	AY.121	0.002977
M	53	F53F	ttC	ttT	22	22	AY.98.1	0.001065
M	53	F53F	ttC	ttT	22	22	AY.99.2	0.002027
M	53	F53F	ttC	ttT	22	22	B.1.1.345	0.956522
M	53	F53F	ttC	ttT	22	22	B.1.1.424	1
M	53	F53F	ttC	ttT	21	21	AY.16	0.007973
M	53	F53F	ttC	ttT	21	21	AY.46.6	0.001516
M	53	F53F	ttC	ttT	21	21	B.1.177.44	0.010898
M	53	F53F	ttC	ttT	21	21	B.1.367	0.01664
M	53	F53F	ttC	ttT	20	20	AE.8	0.00978
M	53	F53F	ttC	ttT	20	20	B.1.177.73	0.011325
M	53	F53F	ttC	ttT	19	19	AY.5.4	0.005257
M	53	F53F	ttC	ttT	19	19	AY.53	0.005463
M	53	F53F	ttC	ttT	19	19	B.1.1.217	0.069091
M	53	F53F	ttC	ttT	19	19	B.1.1.486	0.029968
M	53	F53F	ttC	ttT	18	18	B.1.1.214	0.000998
M	53	F53F	ttC	ttT	18	18	B.1.1.432	0.022785
M	53	F53F	ttC	ttT	17	17	AY.101	0.008337
M	53	F53F	ttC	ttT	17	17	B.1.336	0.041463
M	53	F53F	ttC	ttT	16	16	AY.106	0.005358
M	53	F53F	ttC	ttT	15	15	B.1.258.17	0.00156
M	53	F53F	ttC	ttT	15	15	B.1.623	0.008047
M	53	F53F	ttC	ttT	15	15	B.1.637	0.001096
M	53	F53F	ttC	ttT	15	15	P.1.14	0.000717
M	53	F53F	ttC	ttT	14	14	A	0.005418
M	53	F53F	ttC	ttT	14	14	AY.4.2.1	0.002086
M	53	F53F	ttC	ttT	14	14	AY.54	0.001335
M	53	F53F	ttC	ttT	14	14	B.1.1.10	0.015608
M	53	F53F	ttC	ttT	14	14	B.1.1.294	0.017722
M	53	F53F	ttC	ttT	14	14	B.1.1.318	0.004225
M	53	F53F	ttC	ttT	14	14	B.1.1.416	0.01267
M	53	F53F	ttC	ttT	14	14	B.1.177.8	0.010534
M	53	F53F	ttC	ttT	14	14	B.1.177.81	0.002651
M	53	F53F	ttC	ttT	14	14	B.1.240	0.003018
M	53	F53F	ttC	ttT	14	14	B.1.499	0.014706
M	53	F53F	ttC	ttT	14	14	B.1.575	0.004248
M	53	F53F	ttC	ttT	14	14	B.1.575.1	0.034146
M	53	F53F	ttC	ttT	13	13	AY.104	0.025794
M	53	F53F	ttC	ttT	13	13	AZ.2	0.010673
M	53	F53F	ttC	ttT	13	13	B.1.1.263	0.020249
M	53	F53F	ttC	ttT	13	13	B.1.1.306	0.005699
M	53	F53F	ttC	ttT	13	13	B.1.1.456	0.722222
M	53	F53F	ttC	ttT	13	13	B.1.1.525	0.071038
M	53	F53F	ttC	ttT	13	13	B.1.110.3	0.009339
M	53	F53F	ttC	ttT	13	13	B.1.177.16	0.008638
M	53	F53F	ttC	ttT	13	13	B.1.36.1	0.014823
M	53	F53F	ttC	ttT	13	13	Q.1	0.001642
M	53	F53F	ttC	ttT	12	12	B.1.1.192	0.027714
M	53	F53F	ttC	ttT	12	12	B.1.1.317	0.00494
M	53	F53F	ttC	ttT	12	12	B.1.1.63	0.00463
M	53	F53F	ttC	ttT	12	12	B.1.177.21	0.000918
M	53	F53F	ttC	ttT	12	12	B.1.177.5	0.014907
M	53	F53F	ttC	ttT	11	11	B.1.1.434	0.003834
M	53	F53F	ttC	ttT	11	11	B.1.618	0.044355
M	53	F53F	ttC	ttT	11	11	P.1.15	0.002556
M	53	F53F	ttC	ttT	10	10	AY.30	0.003957
M	53	F53F	ttC	ttT	10	10	AY.59	0.005297
M	53	F53F	ttC	ttT	10	10	AY.75.1	0.001803
M	53	F53F	ttC	ttT	10	10	B.1.177.12	0.001517
M	53	F53F	ttC	ttT	10	10	B.1.177.51	0.045662
M	53	F53F	ttC	ttT	10	10	B.1.177.7	0.001649
M	53	F53F	ttC	ttT	10	10	B.1.409	0.007812
M	53	F53F	ttC	ttT	10	10	B.1.478	0.117647
M	53	F53F	ttC	ttT	10	10	C.23	0.05814
M	53	F53F	ttC	ttT	10	10	D.2	0.00075
M	53	F53F	ttC	ttT	9	9	AD.2	0.001971
M	53	F53F	ttC	ttT	9	9	AY.35	0.002097
M	53	F53F	ttC	ttT	9	9	AY.38	0.004493
M	53	F53F	ttC	ttT	9	9	B.1.1.33	0.003788
M	53	F53F	ttC	ttT	9	9	B.1.1.448	0.018293
M	53	F53F	ttC	ttT	9	9	B.1.22	0.011858
M	53	F53F	ttC	ttT	9	9	B.1.509	0.007792
M	53	F53F	ttC	ttT	9	9	N.5	0.015901
M	53	F53F	ttC	ttT	9	9	P.1.17	0.001456
M	53	F53F	ttC	ttT	9	9	Q.3	0.001305
M	53	F53F	ttC	ttT	8	8	AA.1	0.057971
M	53	F53F	ttC	ttT	8	8	AY.110	0.000902
M	53	F53F	ttC	ttT	8	8	AY.111	0.001465
M	53	F53F	ttC	ttT	8	8	AY.13	0.001288
M	53	F53F	ttC	ttT	8	8	AY.24	0.003448
M	53	F53F	ttC	ttT	8	8	AY.29.1	0.001764
M	53	F53F	ttC	ttT	8	8	AY.5.3	0.002699
M	53	F53F	ttC	ttT	8	8	AY.69	0.001493
M	53	F53F	ttC	ttT	8	8	AY.72	0.010884
M	53	F53F	ttC	ttT	8	8	B.1.1.273	0.054054
M	53	F53F	ttC	ttT	8	8	B.1.111	0.009401
M	53	F53F	ttC	ttT	8	8	B.1.177.33	0.013158
M	53	F53F	ttC	ttT	7	7	AY.105	0.004502
M	53	F53F	ttC	ttT	7	7	AY.116	0.002007
M	53	F53F	ttC	ttT	7	7	AY.71	0.003325
M	53	F53F	ttC	ttT	7	7	B.1.1.218	0.053846
M	53	F53F	ttC	ttT	7	7	B.1.1.316	0.006475
M	53	F53F	ttC	ttT	7	7	B.1.1.369	0.003124
M	53	F53F	ttC	ttT	7	7	B.1.1.37	0.00135
M	53	F53F	ttC	ttT	7	7	B.1.1.50	0.004752
M	53	F53F	ttC	ttT	7	7	B.1.177.15	0.004416
M	53	F53F	ttC	ttT	7	7	B.1.375	0.005738
M	53	F53F	ttC	ttT	7	7	B.1.525	0.000792
M	53	F53F	ttC	ttT	7	7	B.1.9.4	0.042945
M	53	F53F	ttC	ttT	7	7	B.40	0.00255
M	53	F53F	ttC	ttT	7	7	C.26	0.051471
M	53	F53F	ttC	ttT	7	7	P.1.13	0.006289
M	53	F53F	ttC	ttT	6	6	A.23.1	0.004225
M	53	F53F	ttC	ttT	6	6	AY.120.2.1	0.00299
M	53	F53F	ttC	ttT	6	6	AY.16.1	0.00282
M	53	F53F	ttC	ttT	6	6	AY.37	0.001896
M	53	F53F	ttC	ttT	6	6	AY.52	0.004886
M	53	F53F	ttC	ttT	6	6	AY.67	0.002786
M	53	F53F	ttC	ttT	6	6	AY.70	0.001251
M	53	F53F	ttC	ttT	6	6	AY.73	0.003992
M	53	F53F	ttC	ttT	6	6	AY.83	0.010345
M	53	F53F	ttC	ttT	6	6	AY.84	0.002625
M	53	F53F	ttC	ttT	6	6	AY.92	0.001724
M	53	F53F	ttC	ttT	6	6	B.1.1.229	0.034483
M	53	F53F	ttC	ttT	6	6	B.1.1.277	0.004552
M	53	F53F	ttC	ttT	6	6	B.1.1.372	0.004132
M	53	F53F	ttC	ttT	6	6	B.1.1.70	0.002046
M	53	F53F	ttC	ttT	6	6	B.1.177.46	0.00551
M	53	F53F	ttC	ttT	6	6	B.1.177.86	0.001101
M	53	F53F	ttC	ttT	6	6	B.1.381	0.046875
M	53	F53F	ttC	ttT	6	6	B.1.577	0.004124
M	53	F53F	ttC	ttT	6	6	B.1.582	0.002944
M	53	F53F	ttC	ttT	6	6	B.3	0.004983
M	53	F53F	ttC	ttT	6	6	P.1.10	0.001617
M	53	F53F	ttC	ttT	5	5	AY.113	0.000712
M	53	F53F	ttC	ttT	5	5	AY.40	0.004822
M	53	F53F	ttC	ttT	5	5	AY.65	0.002665
M	53	F53F	ttC	ttT	5	5	AY.79	0.006053
M	53	F53F	ttC	ttT	5	5	AY.9	0.000338
M	53	F53F	ttC	ttT	5	5	B.1.1.189	0.007564
M	53	F53F	ttC	ttT	5	5	B.1.1.335	0.064935
M	53	F53F	ttC	ttT	5	5	B.1.1.39	0.002548
M	53	F53F	ttC	ttT	5	5	B.1.1.506	0.185185
M	53	F53F	ttC	ttT	5	5	B.1.160.16	0.004647
M	53	F53F	ttC	ttT	5	5	B.1.177.4	0.001055
M	53	F53F	ttC	ttT	5	5	B.1.214	0.018315
M	53	F53F	ttC	ttT	5	5	B.1.236	0.010267
M	53	F53F	ttC	ttT	5	5	B.1.258.14	0.004902
M	53	F53F	ttC	ttT	5	5	B.1.351.2	0.001513
M	53	F53F	ttC	ttT	5	5	B.1.426	0.005045
M	53	F53F	ttC	ttT	5	5	B.1.433	0.015974
M	53	F53F	ttC	ttT	5	5	B.1.588	0.00455
M	53	F53F	ttC	ttT	5	5	B.1.621.1	0.002529
M	53	F53F	ttC	ttT	5	5	B.29	0.017544
M	53	F53F	ttC	ttT	5	5	C.9	0.151515
M	53	F53F	ttC	ttT	5	5	N.9	0.029762
M	53	F53F	ttC	ttT	4	4	A.9	0.181818
M	53	F53F	ttC	ttT	4	4	AY.46.5	0.000794
M	53	F53F	ttC	ttT	4	4	AY.51	0.003636
M	53	F53F	ttC	ttT	4	4	AY.55	0.00367
M	53	F53F	ttC	ttT	4	4	AY.9.1	0.000335
M	53	F53F	ttC	ttT	4	4	AY.95	0.003044
M	53	F53F	ttC	ttT	4	4	B.1.1.231	0.012384
M	53	F53F	ttC	ttT	4	4	B.1.1.291	0.00297
M	53	F53F	ttC	ttT	4	4	B.1.1.311	0.001433
M	53	F53F	ttC	ttT	4	4	B.1.1.464	0.005891
M	53	F53F	ttC	ttT	4	4	B.1.1.521	0.02139
M	53	F53F	ttC	ttT	4	4	B.1.146	0.016949
M	53	F53F	ttC	ttT	4	4	B.1.157	0.01194
M	53	F53F	ttC	ttT	4	4	B.1.160.9	0.028777
M	53	F53F	ttC	ttT	4	4	B.1.177.32	0.005398
M	53	F53F	ttC	ttT	4	4	B.1.177.52	0.00703
M	53	F53F	ttC	ttT	4	4	B.1.177.60	0.000874
M	53	F53F	ttC	ttT	4	4	B.1.258.11	0.001585
M	53	F53F	ttC	ttT	4	4	B.1.332	0.013986
M	53	F53F	ttC	ttT	4	4	B.1.36.18	0.001681
M	53	F53F	ttC	ttT	4	4	B.1.369	0.001141
M	53	F53F	ttC	ttT	4	4	B.1.524	0.005626
M	53	F53F	ttC	ttT	4	4	B.1.619.1	0.002566
M	53	F53F	ttC	ttT	4	4	B.1.625	0.009412
M	53	F53F	ttC	ttT	4	4	B.1.630	0.020942
M	53	F53F	ttC	ttT	4	4	P.7	0.017467
M	53	F53F	ttC	ttT	3	3	A.29	0.015957
M	53	F53F	ttC	ttT	3	3	AY.10	0.00159
M	53	F53F	ttC	ttT	3	3	AY.114	0.000693
M	53	F53F	ttC	ttT	3	3	AY.19	0.003421
M	53	F53F	ttC	ttT	3	3	AY.22	0.006276
M	53	F53F	ttC	ttT	3	3	AY.32	0.001597
M	53	F53F	ttC	ttT	3	3	AY.57	0.001969
M	53	F53F	ttC	ttT	3	3	AY.7	0.000588
M	53	F53F	ttC	ttT	3	3	AY.7.1	0.000338
M	53	F53F	ttC	ttT	3	3	AY.7.2	0.001678
M	53	F53F	ttC	ttT	3	3	B.1.1.157	0.00274
M	53	F53F	ttC	ttT	3	3	B.1.1.269	0.00406
M	53	F53F	ttC	ttT	3	3	B.1.1.512	0.085714
M	53	F53F	ttC	ttT	3	3	B.1.1.517	0.020408
M	53	F53F	ttC	ttT	3	3	B.1.126	0.003827
M	53	F53F	ttC	ttT	3	3	B.1.160.12	0.019231
M	53	F53F	ttC	ttT	3	3	B.1.160.26	0.007264
M	53	F53F	ttC	ttT	3	3	B.1.177.35	0.002073
M	53	F53F	ttC	ttT	3	3	B.1.177.56	0.002003
M	53	F53F	ttC	ttT	3	3	B.1.177.58	0.003995
M	53	F53F	ttC	ttT	3	3	B.1.214.2	0.001799
M	53	F53F	ttC	ttT	3	3	B.1.218	0.015464
M	53	F53F	ttC	ttT	3	3	B.1.221.3	0.0025
M	53	F53F	ttC	ttT	3	3	B.1.258.4	0.010345
M	53	F53F	ttC	ttT	3	3	B.1.279	0.001541
M	53	F53F	ttC	ttT	3	3	B.1.305	0.006452
M	53	F53F	ttC	ttT	3	3	B.1.349	0.002144
M	53	F53F	ttC	ttT	3	3	B.1.350	0.008798
M	53	F53F	ttC	ttT	3	3	B.1.362	0.004622
M	53	F53F	ttC	ttT	3	3	B.1.400	0.001287
M	53	F53F	ttC	ttT	3	3	B.1.466.2	0.001174
M	53	F53F	ttC	ttT	3	3	B.1.497	0.000944
M	53	F53F	ttC	ttT	3	3	B.1.551	0.003871
M	53	F53F	ttC	ttT	3	3	B.1.580	0.012195
M	53	F53F	ttC	ttT	3	3	B.1.633	0.125
M	53	F53F	ttC	ttT	3	3	B.1.94	0.081081
M	53	F53F	ttC	ttT	3	3	B.55	0.00885
M	53	F53F	ttC	ttT	3	3	B.6	0.00273
M	53	F53F	ttC	ttT	3	3	C.31	0.053571
M	53	F53F	ttC	ttT	3	3	N.4	0.012766
M	53	F53F	ttC	ttT	3	3	P.1.12	0.001452
M	53	F53F	ttC	ttT	2	2	A.5	0.003846
M	53	F53F	ttC	ttT	2	2	AD.1	0.00823
M	53	F53F	ttC	ttT	2	2	AW.1	0.006098
M	53	F53F	ttC	ttT	2	2	AY.12	0.000632
M	53	F53F	ttC	ttT	2	2	AY.2	0.000712
M	53	F53F	ttC	ttT	2	2	AY.4.4	0.000818
M	53	F53F	ttC	ttT	2	2	AY.50	0.001599
M	53	F53F	ttC	ttT	2	2	AY.62	0.000871
M	53	F53F	ttC	ttT	2	2	AY.8	0.001212
M	53	F53F	ttC	ttT	2	2	AY.86	0.00166
M	53	F53F	ttC	ttT	2	2	AY.88	0.001768
M	53	F53F	ttC	ttT	2	2	AY.99	0.002099
M	53	F53F	ttC	ttT	2	2	B.1.1.116	0.125
M	53	F53F	ttC	ttT	2	2	B.1.1.153	0.002191
M	53	F53F	ttC	ttT	2	2	B.1.1.225	0.014388
M	53	F53F	ttC	ttT	2	2	B.1.1.265	0.006309
M	53	F53F	ttC	ttT	2	2	B.1.1.304	0.005618
M	53	F53F	ttC	ttT	2	2	B.1.1.326	0.003521
M	53	F53F	ttC	ttT	2	2	B.1.1.365	0.011173
M	53	F53F	ttC	ttT	2	2	B.1.1.376	0.011905
M	53	F53F	ttC	ttT	2	2	B.1.1.397	0.004505
M	53	F53F	ttC	ttT	2	2	B.1.1.523	0.003125
M	53	F53F	ttC	ttT	2	2	B.1.13	0.004751
M	53	F53F	ttC	ttT	2	2	B.1.139	0.001466
M	53	F53F	ttC	ttT	2	2	B.1.147	0.001512
M	53	F53F	ttC	ttT	2	2	B.1.177.57	0.000562
M	53	F53F	ttC	ttT	2	2	B.1.177.6	0.001953
M	53	F53F	ttC	ttT	2	2	B.1.177.69	0.002967
M	53	F53F	ttC	ttT	2	2	B.1.210	0.004264
M	53	F53F	ttC	ttT	2	2	B.1.241	0.001623
M	53	F53F	ttC	ttT	2	2	B.1.258.20	0.031746
M	53	F53F	ttC	ttT	2	2	B.1.281	0.043478
M	53	F53F	ttC	ttT	2	2	B.1.346	0.002621
M	53	F53F	ttC	ttT	2	2	B.1.351.3	0.001753
M	53	F53F	ttC	ttT	2	2	B.1.356	0.003454
M	53	F53F	ttC	ttT	2	2	B.1.359	0.045455
M	53	F53F	ttC	ttT	2	2	B.1.377	0.009132
M	53	F53F	ttC	ttT	2	2	B.1.404	0.002604
M	53	F53F	ttC	ttT	2	2	B.1.417	0.057143
M	53	F53F	ttC	ttT	2	2	B.1.422	0.001625
M	53	F53F	ttC	ttT	2	2	B.1.443	0.009346
M	53	F53F	ttC	ttT	2	2	B.1.465	0.007605
M	53	F53F	ttC	ttT	2	2	B.1.510	0.052632
M	53	F53F	ttC	ttT	2	2	B.1.523	0.004902
M	53	F53F	ttC	ttT	2	2	B.1.564	0.000852
M	53	F53F	ttC	ttT	2	2	B.1.565	0.001621
M	53	F53F	ttC	ttT	2	2	B.1.619	0.001742
M	53	F53F	ttC	ttT	2	2	B.1.627	0.00404
M	53	F53F	ttC	ttT	2	2	B.1.628	0.000705
M	53	F53F	ttC	ttT	2	2	B.4	0.004415
M	53	F53F	ttC	ttT	2	2	B.45	0.007663
M	53	F53F	ttC	ttT	2	2	B.52	0.020202
M	53	F53F	ttC	ttT	2	2	B.6.6	0.001778
M	53	F53F	ttC	ttT	2	2	C.14	0.008658
M	53	F53F	ttC	ttT	2	2	N.3	0.011628
M	53	F53F	ttC	ttT	2	2	P.1.6	0.003891
M	53	F53F	ttC	ttT	2	2	P.3	0.00319
M	53	F53F	ttC	ttT	2	2	P.4	0.007605
M	53	F53F	ttC	ttT	1	1		0.055556
M	53	F53F	ttC	ttT	1	1	A.19	0.009434
M	53	F53F	ttC	ttT	1	1	A.2.4	0.003367
M	53	F53F	ttC	ttT	1	1	A.24	0.071429
M	53	F53F	ttC	ttT	1	1	AE.4	0.043478
M	53	F53F	ttC	ttT	1	1	AP.1	0.001502
M	53	F53F	ttC	ttT	1	1	AY.1	0.000396
M	53	F53F	ttC	ttT	1	1	AY.107	0.000466
M	53	F53F	ttC	ttT	1	1	AY.108	0.001103
M	53	F53F	ttC	ttT	1	1	AY.116.1	0.000311
M	53	F53F	ttC	ttT	1	1	AY.120.2	0.001285
M	53	F53F	ttC	ttT	1	1	AY.21	0.001898
M	53	F53F	ttC	ttT	1	1	AY.23.1	0.000417
M	53	F53F	ttC	ttT	1	1	AY.28	0.00189
M	53	F53F	ttC	ttT	1	1	AY.39.2	0.001541
M	53	F53F	ttC	ttT	1	1	AY.4.3	0.000842
M	53	F53F	ttC	ttT	1	1	AY.46.3	0.000934
M	53	F53F	ttC	ttT	1	1	AY.48	0.000465
M	53	F53F	ttC	ttT	1	1	AY.87	0.000833
M	53	F53F	ttC	ttT	1	1	AY.90	0.000684
M	53	F53F	ttC	ttT	1	1	AY.94	0.000443
M	53	F53F	ttC	ttT	1	1	AY.96	0.002075
M	53	F53F	ttC	ttT	1	1	AY.97	0.001701
M	53	F53F	ttC	ttT	1	1	AY.99.1	0.001553
M	53	F53F	ttC	ttT	1	1	B.1.1.172	0.018182
M	53	F53F	ttC	ttT	1	1	B.1.1.177	0.019231
M	53	F53F	ttC	ttT	1	1	B.1.1.196	0.005714
M	53	F53F	ttC	ttT	1	1	B.1.1.207	0.001182
M	53	F53F	ttC	ttT	1	1	B.1.1.241	0.00207
M	53	F53F	ttC	ttT	1	1	B.1.1.302	0.002075
M	53	F53F	ttC	ttT	1	1	B.1.1.303	0.002762
M	53	F53F	ttC	ttT	1	1	B.1.1.312	0.001912
M	53	F53F	ttC	ttT	1	1	B.1.1.315	0.008475
M	53	F53F	ttC	ttT	1	1	B.1.1.332	0.03125
M	53	F53F	ttC	ttT	1	1	B.1.1.351	0.002793
M	53	F53F	ttC	ttT	1	1	B.1.1.356	0.008547
M	53	F53F	ttC	ttT	1	1	B.1.1.385	0.004464
M	53	F53F	ttC	ttT	1	1	B.1.1.391	0.008547
M	53	F53F	ttC	ttT	1	1	B.1.1.420	0.001006
M	53	F53F	ttC	ttT	1	1	B.1.1.437	0.010417
M	53	F53F	ttC	ttT	1	1	B.1.1.54	0.003021
M	53	F53F	ttC	ttT	1	1	B.1.1.61	0.008772
M	53	F53F	ttC	ttT	1	1	B.1.104	0.00369
M	53	F53F	ttC	ttT	1	1	B.1.117	0.0125
M	53	F53F	ttC	ttT	1	1	B.1.128	0.000635
M	53	F53F	ttC	ttT	1	1	B.1.160.10	0.008065
M	53	F53F	ttC	ttT	1	1	B.1.160.14	0.002119
M	53	F53F	ttC	ttT	1	1	B.1.160.33	0.004425
M	53	F53F	ttC	ttT	1	1	B.1.177.11	0.001698
M	53	F53F	ttC	ttT	1	1	B.1.177.18	0.00116
M	53	F53F	ttC	ttT	1	1	B.1.177.19	0.001431
M	53	F53F	ttC	ttT	1	1	B.1.177.40	0.005155
M	53	F53F	ttC	ttT	1	1	B.1.177.42	0.000894
M	53	F53F	ttC	ttT	1	1	B.1.177.43	0.001477
M	53	F53F	ttC	ttT	1	1	B.1.177.45	0.000381
M	53	F53F	ttC	ttT	1	1	B.1.177.50	0.004695
M	53	F53F	ttC	ttT	1	1	B.1.177.54	0.000606
M	53	F53F	ttC	ttT	1	1	B.1.177.67	0.007634
M	53	F53F	ttC	ttT	1	1	B.1.177.83	0.001481
M	53	F53F	ttC	ttT	1	1	B.1.177.88	0.012346
M	53	F53F	ttC	ttT	1	1	B.1.177.9	0.001332
M	53	F53F	ttC	ttT	1	1	B.1.179	0.003759
M	53	F53F	ttC	ttT	1	1	B.1.190	0.01
M	53	F53F	ttC	ttT	1	1	B.1.192	0.009259
M	53	F53F	ttC	ttT	1	1	B.1.199	0.004132
M	53	F53F	ttC	ttT	1	1	B.1.201	0.005682
M	53	F53F	ttC	ttT	1	1	B.1.205	0.02381
M	53	F53F	ttC	ttT	1	1	B.1.214.1	0.02
M	53	F53F	ttC	ttT	1	1	B.1.233	0.014085
M	53	F53F	ttC	ttT	1	1	B.1.235	0.002519
M	53	F53F	ttC	ttT	1	1	B.1.245	0.03125
M	53	F53F	ttC	ttT	1	1	B.1.258.24	0.010753
M	53	F53F	ttC	ttT	1	1	B.1.265	0.001271
M	53	F53F	ttC	ttT	1	1	B.1.280	0.007143
M	53	F53F	ttC	ttT	1	1	B.1.298	0.002114
M	53	F53F	ttC	ttT	1	1	B.1.325	0.006897
M	53	F53F	ttC	ttT	1	1	B.1.351.5	0.0006
M	53	F53F	ttC	ttT	1	1	B.1.354	0.043478
M	53	F53F	ttC	ttT	1	1	B.1.36.10	0.004785
M	53	F53F	ttC	ttT	1	1	B.1.36.19	0.009259
M	53	F53F	ttC	ttT	1	1	B.1.36.27	0.000763
M	53	F53F	ttC	ttT	1	1	B.1.36.9	0.003215
M	53	F53F	ttC	ttT	1	1	B.1.361	0.001289
M	53	F53F	ttC	ttT	1	1	B.1.363	0.012987
M	53	F53F	ttC	ttT	1	1	B.1.371	0.001122
M	53	F53F	ttC	ttT	1	1	B.1.389	0.001002
M	53	F53F	ttC	ttT	1	1	B.1.396	0.000706
M	53	F53F	ttC	ttT	1	1	B.1.397	0.004854
M	53	F53F	ttC	ttT	1	1	B.1.399	0.001934
M	53	F53F	ttC	ttT	1	1	B.1.411	0.003704
M	53	F53F	ttC	ttT	1	1	B.1.415.1	0.007576
M	53	F53F	ttC	ttT	1	1	B.1.416	0.001269
M	53	F53F	ttC	ttT	1	1	B.1.425	0.002994
M	53	F53F	ttC	ttT	1	1	B.1.428	0.00102
M	53	F53F	ttC	ttT	1	1	B.1.428.3	0.012821
M	53	F53F	ttC	ttT	1	1	B.1.436	0.001029
M	53	F53F	ttC	ttT	1	1	B.1.451	0.008197
M	53	F53F	ttC	ttT	1	1	B.1.459	0.004082
M	53	F53F	ttC	ttT	1	1	B.1.462	0.007246
M	53	F53F	ttC	ttT	1	1	B.1.466	0.023256
M	53	F53F	ttC	ttT	1	1	B.1.471	0.002732
M	53	F53F	ttC	ttT	1	1	B.1.527	0.003704
M	53	F53F	ttC	ttT	1	1	B.1.538	0.008065
M	53	F53F	ttC	ttT	1	1	B.1.550	0.013699
M	53	F53F	ttC	ttT	1	1	B.1.557	0.05
M	53	F53F	ttC	ttT	1	1	B.1.560	0.00463
M	53	F53F	ttC	ttT	1	1	B.1.571	0.009709
M	53	F53F	ttC	ttT	1	1	B.1.587	0.001898
M	53	F53F	ttC	ttT	1	1	B.1.590	0.004545
M	53	F53F	ttC	ttT	1	1	B.1.599	0.00365
M	53	F53F	ttC	ttT	1	1	B.1.600	0.005848
M	53	F53F	ttC	ttT	1	1	B.1.605	0.005952
M	53	F53F	ttC	ttT	1	1	B.1.632	0.006711
M	53	F53F	ttC	ttT	1	1	B.35	0.007812
M	53	F53F	ttC	ttT	1	1	B.39	0.002331
M	53	F53F	ttC	ttT	1	1	B.4.1	0.018868
M	53	F53F	ttC	ttT	1	1	C.1	0.002392
M	53	F53F	ttC	ttT	1	1	C.17	0.055556
M	53	F53F	ttC	ttT	1	1	C.3	0.007634
M	53	F53F	ttC	ttT	1	1	C.36.3	0.000567
M	53	F53F	ttC	ttT	1	1	C.37.1	0.002618
M	53	F53F	ttC	ttT	1	1	C.4	0.01
M	53	F53F	ttC	ttT	1	1	C.6	0.037037
M	53	F53F	ttC	ttT	1	1	D.3	0.005917
M	53	F53F	ttC	ttT	1	1	L.2	0.011364
M	53	F53F	ttC	ttT	1	1	N.6	0.007092
M	53	F53F	ttC	ttT	1	1	P.1.1	0.000318
M	53	F53F	ttC	ttT	1	1	P.1.16	0.000374
M	53	F53F	ttC	ttT	1	1	P.1.9	0.004808
M	53	F53F	ttC	ttT	1	1	Q.2	0.000613
M	53	F53F	ttC	ttT	1	1	U.3	0.003861

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.