CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = M : CodonNum = 51

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
M51L51LsynTtaCta3172310.72870726673-26675
M51L51LsynttAttG317810.2555226673-26675
M51L51LsynTtACtT31750.015772926673-26675
M51L51deldelTTA---3434126673-26675
M51L51RnonsynTTaAGa1212126673-26675
M51L51FnonsynttAttT1010126673-26675
M51L51XnonsyntTatAa640.66666726673-26675
M51L51XnonsyntTatGa620.33333326673-26675
M51L51VnonsynTtaGta55126673-26675
M51L51QnonsynTTaCAa33126673-26675
M51L51del1delTta-ta310.33333326673-26675
M51L51del1delTtACt-310.33333326673-26675
M51L51del1delttAtt-310.33333326673-26675
M51L51AnonsynTTaGCa22126673-26675
M51L51SnonsyntTatCa22126673-26675
M51L51YnonsyntTAtAT22126673-26675
M51L51HnonsynTTACAT22126673-26675
M51L51WnonsyntTAtGG22126673-26675
M51L51InonsynTtAAtT22126673-26675
M51L51del2deltTAt--11126673-26675

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
M51L51LTtaCta231317All0.000044
M51L51LttAttG81317All0.000015
M51L51LTtACtT5317All0.000001
M51L51LTtaCta171176B.1.1.70.000153
M51L51LttAttG5176B.1.1.70.000004
M51L51delTTA---3434All0.000007
M51L51LTtaCta1717B.1.6330.708333
M51L51LttAttG1515AY.440.000091
M51L51LttAttG1313A.23.10.009155
M51L51delTTA---1313B.1.177.210.000994
M51L51RTTaAGa1212All0.000002
M51L51LttAttG812B.10.000073
M51L51LTtaCta412B.10.000037
M51L51LTtACtT4100.222222
M51L51LTtaCta4100.222222
M51L51LttAttG2100.111111
M51L51FttAttT1010All0.000002
M51L51LttAttG910AY.30.00009
M51L51LTtaCta110AY.30.00001
M51L51RTTaAGa99B.1.177.210.000688
M51L51LTtaCta88B.1.1600.00025
M51L51LTtaCta47AY.40.000006
M51L51LttAttG37AY.40.000005
M51L51XtTatAa46All0.000001
M51L51XtTatGa26All0
M51L51VTtaGta55All0.000001
M51L51delTTA---55B.1.1.70.000004
M51L51FttAttT440.222222
M51L51XtTatAa240.111111
M51L51XtTatGa240.111111
M51L51LTtaCta44AY.260.000113
M51L51LTtaCta44AY.4.20.000087
M51L51LttAttG44B.1.20.000035
M51L51QTTaCAa33All0.000001
M51L51del1Tta-ta13All0
M51L51del1ttAtt-13All0
M51L51del1TtACt-13All0
M51L51LttAttG33AY.750.000168
M51L51RTTaAGa33B.1.1.70.000003
M51L51VTtaGta33B.1.617.20.000011
M51L51LTtaCta33B.1.6230.001609
M51L51WtTAtGG220.111111
M51L51delTTA---220.111111
M51L51QTTaCAa220.111111
M51L51HTTACAT220.111111
M51L51YtTAtAT220.111111
M51L51ATTaGCa22All0
M51L51HTTACAT22All0
M51L51StTatCa22All0
M51L51YtTAtAT22All0
M51L51ITtAAtT22All0
M51L51WtTAtGG22All0
M51L51delTTA---22AY.430.000009
M51L51ITtAAtT22B.1.10.000036
M51L51FttAttT22B.1.1.70.000002
M51L51LttAttG22B.1.177.210.000153
M51L51LttAttG22B.1.617.20.000008
M51L51LttAttG22P.1.150.000465
M51L51LTtaCta22Q.30.00029
M51L51LttAttG11A0.000387
M51L51StTatCa11AH.30.003802
M51L51del2tTAt--11All0
M51L51VTtaGta11AY.1020.000027
M51L51StTatCa11AY.1030.000006
M51L51LTtaCta11AY.1180.000063
M51L51delTTA---11AY.1200.000037
M51L51VTtaGta11AY.1200.000037
M51L51LttAttG11AY.130.000161
M51L51del1Tta-ta11AY.140.000088
M51L51LttAttG11AY.230.00007
M51L51FttAttT11AY.240.000431
M51L51XtTatAa11AY.250.000006
M51L51delTTA---11AY.3.10.000085
M51L51LttAttG11AY.390.000025
M51L51LTtaCta11AY.39.10.00004
M51L51LTtaCta11AY.420.00004
M51L51FttAttT11AY.430.000004
M51L51LttAttG11AY.430.000004
M51L51del2tTAt--11AY.440.000006
M51L51LTtaCta11AY.470.000031
M51L51FttAttT11AY.580.000907
M51L51delTTA---11AY.680.000274
M51L51LttAttG11AY.710.000475
M51L51LTtaCta11AY.780.001541
M51L51delTTA---11AY.840.000437
M51L51LttAttG11AY.90.000068
M51L51del1ttAtt-11B.10.000009
M51L51delTTA---11B.10.000009
M51L51QTTaCAa11B.1.10.000018
M51L51LTtaCta11B.1.10.000018
M51L51delTTA---11B.1.1.280.000311
M51L51LttAttG11B.1.1.3720.000689
M51L51LTtaCta11B.1.1.5190.00004
M51L51LttAttG11B.1.1.5230.001563
M51L51ATTaGCa11B.1.1.70.000001
M51L51LttAttG11B.1.1.700.000341
M51L51LTtaCta11B.1.177.190.001431
M51L51ATTaGCa11B.1.177.210.000076
M51L51del1TtACt-11B.1.177.210.000076
M51L51XtTatAa11B.1.20.000009
M51L51LttAttG11B.1.2430.00007
M51L51delTTA---11B.1.258.110.000396
M51L51LTtACtT11B.1.3320.003497
M51L51LTtaCta11B.1.4620.007246
M51L51delTTA---11B.1.5770.000687
M51L51delTTA---11B.1.617.20.000004
M51L51delTTA---11B.1.6270.00202
M51L51LttAttG11C.370.000116
M51L51delTTA---11P.10.000016
M51L51FttAttT11P.1.10.000318
M51L51delTTA---11P.1.150.000232
M51L51LttAttG11Q.10.000126