CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = M : CodonNum = 48

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
M48I48VnonsynAtaGta15581558126664-26666
M48I48TnonsynaTaaCa1531500.98039226664-26666
M48I48TnonsynaTAaCT15330.019607826664-26666
M48I48LnonsynAtaCta91610.6703326664-26666
M48I48LnonsynAtaTta91280.30769226664-26666
M48I48LnonsynAtACtT9120.02197826664-26666
M48I48deldelATA---3939126664-26666
M48I48MnonsynatAatG2424126664-26666
M48I48IsynatAatT14100.71428626664-26666
M48I48IsynatAatC1440.28571426664-26666
M48I48KnonsynaTaaAa540.826664-26666
M48I48FnonsynAtATtT530.626664-26666
M48I48FnonsynAtATtC520.426664-26666
M48I48KnonsynaTAaAG510.226664-26666
M48I48del1delatAat-420.526664-26666
M48I48del1delaTaa-a420.526664-26666
M48I48EnonsynATaGAa11126664-26666

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
M48I48VAtaGta15581558All0.000298
M48I48VAtaGta974974B.1.3750.798361
M48I48VAtaGta212212B.1.1.70.00019
M48I48TaTaaCa150153All0.000029
M48I48TaTAaCT3153All0.000001
M48I48LAtaCta6191All0.000012
M48I48LAtaTta2891All0.000005
M48I48LAtACtT291All0
M48I48VAtaGta8686B.1.258.30.144054
M48I48TaTaaCa7070AY.30.000696
M48I48VAtaGta6969AY.440.00042
M48I48delATA---3939All0.000007
M48I48VAtaGta3434AY.1030.000211
M48I48VAtaGta3131B.10.000284
M48I48VAtaGta2626B.1.2580.00173
M48I48TaTaaCa2525AY.460.002602
M48I48MatAatG2424All0.000005
M48I48delATA---1717B.1.177.210.0013
M48I48VAtaGta1515AY.200.000583
M48I48VAtaGta1515AY.40.000023
M48I48LAtaTta1515AY.50.00031
M48I48IatAatT1014All0.000002
M48I48IatAatC414All0.000001
M48I48VAtaGta1010B.1.617.20.000038
M48I48TaTaaCa99AY.440.000055
M48I48LAtaCta89B.1.10.000145
M48I48LAtaTta19B.1.10.000018
M48I48VAtaGta88AY.250.000048
M48I48VAtaGta88B.1.4270.000404
M48I48LAtaTta370.166667
M48I48LAtACtT270.111111
M48I48LAtaCta270.111111
M48I48TaTaaCa77AY.40.000011
M48I48TaTaaCa77AZ.20.005747
M48I48delATA---77B.1.1.70.000006
M48I48TaTaaCa77B.1.1.70.000006
M48I48MatAatG66AY.570.003937
M48I48LAtaTta56B.1.1770.000066
M48I48LAtaCta16B.1.1770.000013
M48I48LAtaCta66B.1.20.000053
M48I48VAtaGta66B.1.20.000053
M48I48IatAatT450.222222
M48I48IatAatC150.055556
M48I48KaTaaAa45All0.000001
M48I48FAtATtT35All0.000001
M48I48FAtATtC25All0
M48I48KaTAaAG15All0
M48I48VAtaGta55AY.430.000022
M48I48LAtaCta55B.1.1.1610.017668
M48I48LAtaCta55B.1.1.2670.050505
M48I48LAtaCta55B.1.1.3010.005896
M48I48FAtATtT340.166667
M48I48FAtATtC140.055556
M48I48del1atAat-24All0
M48I48del1aTaa-a24All0
M48I48VAtaGta44AY.30.00004
M48I48LAtaCta44AY.30.00004
M48I48VAtaGta44AY.50.000083
M48I48LAtaCta34B.1.1.70.000003
M48I48LAtaTta14B.1.1.70.000001
M48I48IatAatT44B.1.2410.003247
M48I48VAtaGta44B.1.3670.00317
M48I48LAtaTta24B.1.5960.000174
M48I48LAtaCta24B.1.5960.000174
M48I48TaTaaCa44B.1.617.20.000015
M48I48MatAatG44C.370.000464
M48I48TaTaaCa33AY.1050.001929
M48I48TaTaaCa33AY.250.000018
M48I48VAtaGta33AY.340.000291
M48I48LAtaCta33B.10.000027
M48I48VAtaGta33B.1.10.000054
M48I48VAtaGta33B.1.1.2220.000612
M48I48TaTAaCT33B.1.177.210.000229
M48I48TaTaaCa33B.400.001093
M48I48delATA---220.111111
M48I48TaTaaCa22AY.1170.000169
M48I48VAtaGta22AY.1190.000071
M48I48VAtaGta22AY.1210.000271
M48I48VAtaGta22AY.290.000032
M48I48TaTaaCa22AY.39.10.000079
M48I48MatAatG22AY.40.000003
M48I48delATA---22AY.430.000009
M48I48MatAatG22AY.470.000062
M48I48VAtaGta22AY.690.000373
M48I48LAtaCta22B.1.1.3180.000604
M48I48VAtaGta22B.1.1.5190.000079
M48I48MatAatG22B.1.1.70.000002
M48I48IatAatT12B.1.1.70.000001
M48I48IatAatC12B.1.1.70.000001
M48I48VAtaGta22B.1.2400.000431
M48I48MatAatG22B.1.4290.000047
M48I48VAtaGta22C.370.000232
M48I48LAtaCta22P.10.000032
M48I48VAtaGta11A0.000387
M48I48EATaGAa11All0
M48I48TaTaaCa11AY.1000.000046
M48I48VAtaGta11AY.1130.000142
M48I48KaTAaAG11AY.1170.000085
M48I48VAtaGta11AY.1170.000085
M48I48VAtaGta11AY.1180.000063
M48I48delATA---11AY.1200.000037
M48I48TaTaaCa11AY.160.00038
M48I48TaTaaCa11AY.200.000039
M48I48VAtaGta11AY.270.000065
M48I48IatAatC11AY.3.10.000085
M48I48EATaGAa11AY.300.000396
M48I48VAtaGta11AY.330.000067
M48I48TaTaaCa11AY.4.20.000022
M48I48VAtaGta11AY.4.2.10.000149
M48I48LAtaCta11AY.440.000006
M48I48MatAatG11AY.440.000006
M48I48VAtaGta11AY.460.000104
M48I48VAtaGta11AY.470.000031
M48I48VAtaGta11AY.590.00053
M48I48delATA---11AY.680.000274
M48I48TaTaaCa11AY.690.000187
M48I48VAtaGta11AY.710.000475
M48I48delATA---11AY.840.000437
M48I48VAtaGta11AY.9.20.000037
M48I48LAtaTta11AY.930.000273
M48I48IatAatT11B.10.000009
M48I48TaTaaCa11B.10.000009
M48I48delATA---11B.10.000009
M48I48del1atAat-11B.10.000009
M48I48del1atAat-11B.1.10.000018
M48I48KaTaaAa11B.1.10.000018
M48I48MatAatG11B.1.1.3180.000302
M48I48VAtaGta11B.1.1.3320.03125
M48I48LAtaCta11B.1.1.3480.000796
M48I48KaTaaAa11B.1.1.3720.000689
M48I48LAtaCta11B.1.1.5190.00004
M48I48FAtATtC11B.1.1.70.000001
M48I48IatAatC11B.1.1600.000031
M48I48delATA---11B.1.1610.017241
M48I48MatAatG11B.1.1770.000013
M48I48VAtaGta11B.1.1770.000013
M48I48VAtaGta11B.1.177.210.000076
M48I48MatAatG11B.1.177.440.000519
M48I48VAtaGta11B.1.177.570.000281
M48I48TaTaaCa11B.1.20.000009
M48I48del1aTaa-a11B.1.20.000009
M48I48MatAatG11B.1.20.000009
M48I48KaTaaAa11B.1.20.000009
M48I48VAtaGta11B.1.2210.000071
M48I48VAtaGta11B.1.2430.00007
M48I48delATA---11B.1.258.110.000396
M48I48LAtaCta11B.1.3110.000275
M48I48VAtaGta11B.1.3820.008929
M48I48del1aTaa-a11B.1.390.003906
M48I48LAtaCta11B.1.4160.001269
M48I48LAtaCta11B.1.4280.00102
M48I48KaTaaAa11B.1.5010.007353
M48I48LAtaCta11B.1.5250.000113
M48I48LAtaCta11B.1.5260.000024
M48I48VAtaGta11B.1.5260.000024
M48I48delATA---11B.1.5770.000687
M48I48delATA---11B.1.5950.000261
M48I48VAtaGta11B.1.5960.000087
M48I48LAtaCta11B.1.617.10.000129
M48I48LAtaCta11B.1.617.20.000004
M48I48MatAatG11B.1.617.20.000004
M48I48delATA---11B.1.6270.00202
M48I48LAtaCta11B.1.6370.000073
M48I48LAtaCta11B.400.000364
M48I48LAtaCta11B.610.005747
M48I48delATA---11P.10.000016
M48I48VAtaGta11P.10.000016
M48I48VAtaGta11P.1.120.000484
M48I48delATA---11P.1.150.000232
M48I48VAtaGta11P.20.000187
M48I48TaTaaCa11Q.10.000126