CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = M : CodonNum = 44

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
M44R44KnonsynaGgaAg8508470.99647126652-26654
M44R44KnonsynaGGaAA85030.0035294126652-26654
M44R44SnonsynagGagT4934900.99391526652-26654
M44R44SnonsynagGagC49330.0060851926652-26654
M44R44RsynagGagA1611550.96273326652-26654
M44R44RsynAggCgg16160.037267126652-26654
M44R44MnonsynaGgaTg7676126652-26654
M44R44deldelAGG---3636126652-26654
M44R44GnonsynAggGgg88126652-26654
M44R44WnonsynAggTgg33126652-26654
M44R44CnonsynAgGTgT11126652-26654
M44R44XnonsynAGGTAA11126652-26654
M44R44del1delaGga-g11126652-26654
M44R44NnonsynaGGaAC11126652-26654

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
M44R44KaGgaAg847850All0.000162
M44R44KaGGaAA3850All0.000001
M44R44SagGagT490493All0.000094
M44R44SagGagC3493All0.000001
M44R44KaGgaAg328328P.1.40.320312
M44R44SagGagT188188B.1.517.10.989474
M44R44RagGagA155161All0.00003
M44R44RAggCgg6161All0.000001
M44R44KaGgaAg146146AY.250.000878
M44R44SagGagT126126B.1.5170.0538
M44R44KaGgaAg8282AY.1030.000509
M44R44MaGgaTg7676All0.000015
M44R44RagGagA6363AY.40.000098
M44R44KaGgaAg6061B.1.20.000528
M44R44KaGGaAA161B.1.20.000009
M44R44KaGgaAg5858B.1.2580.00386
M44R44KaGgaAg4848AY.440.000292
M44R44SagGagT4243B.1.1.70.000038
M44R44SagGagC143B.1.1.70.000001
M44R44delAGG---3636All0.000007
M44R44KaGgaAg3636B.1.617.20.000136
M44R44RagGagA2526AY.390.000618
M44R44RAggCgg126AY.390.000025
M44R44SagGagT2626AY.39.10.00103
M44R44delAGG---1616B.1.177.210.001224
M44R44RagGagA1515AY.430.000066
M44R44RagGagA1414B.1.177.570.003934
M44R44SagGagT1212B.10.00011
M44R44RagGagA910AY.440.000055
M44R44RAggCgg110AY.440.000006
M44R44MaGgaTg99B.1.1.70.000008
M44R44SagGagT99B.1.1770.000119
M44R44GAggGgg88All0.000002
M44R44delAGG---88B.1.1.70.000007
M44R44MaGgaTg77AY.40.000011
M44R44KaGgaAg77AY.460.000729
M44R44SagGagT77B.1.20.000062
M44R44MaGgaTg77B.1.617.20.000026
M44R44SagGagT77B.1.617.20.000026
M44R44MaGgaTg66B.1.177.210.000459
M44R44KaGgaAg66B.1.4270.000303
M44R44KaGgaAg55AY.1020.000133
M44R44KaGgaAg55AY.1200.000186
M44R44SagGagT55AY.40.000008
M44R44KaGgaAg55AY.40.000008
M44R44KaGgaAg55AY.430.000022
M44R44KaGgaAg55B.10.000046
M44R44SagGagT55B.1.10.000091
M44R44RagGagA45B.1.20.000035
M44R44RAggCgg15B.1.20.000009
M44R44SagGagT55D.20.000375
M44R44KaGgaAg440.222222
M44R44SagGagT44AY.1030.000025
M44R44RagGagA44AY.270.000259
M44R44MaGgaTg44AY.420.000161
M44R44KaGgaAg44B.1.10.000073
M44R44RagGagA44B.1.1.2220.000816
M44R44KaGgaAg44B.1.1.70.000004
M44R44SagGagT44B.1.1600.000125
M44R44MaGgaTg44B.1.20.000035
M44R44WAggTgg33All0.000001
M44R44MaGgaTg33AY.430.000013
M44R44SagGagT33B0.000383
M44R44KaGgaAg33B.1.177.210.000229
M44R44SagGagT33B.1.177.210.000229
M44R44SagGagT33B.1.4290.000071
M44R44KaGgaAg33B.1.5260.000071
M44R44RagGagA33B.1.617.20.000011
M44R44GAggGgg33B.1.617.20.000011
M44R44MaGgaTg33P.10.000047
M44R44delAGG---220.111111
M44R44SagGagC220.111111
M44R44MaGgaTg22AY.1030.000012
M44R44RagGagA22AY.250.000012
M44R44SagGagT22AY.250.000012
M44R44KaGgaAg22AY.290.000032
M44R44KaGgaAg22AY.30.00002
M44R44SagGagT22AY.30.00002
M44R44KaGgaAg22AY.330.000134
M44R44SagGagT22AY.390.000049
M44R44SagGagT22AY.430.000009
M44R44delAGG---22AY.430.000009
M44R44SagGagT22AY.440.000012
M44R44SagGagT22AY.470.000062
M44R44RagGagA22AY.50.000041
M44R44MaGgaTg22AY.50.000041
M44R44KaGgaAg22AY.99.20.000184
M44R44KaGgaAg22B0.000256
M44R44MaGgaTg22B.10.000018
M44R44MaGgaTg22B.1.1.5190.000079
M44R44KaGgaAg22B.1.1600.000062
M44R44KaGgaAg22B.1.160.210.040816
M44R44RagGagA22B.1.2400.000431
M44R44MaGgaTg22B.1.2430.000139
M44R44MaGgaTg22B.1.3670.001585
M44R44KaGgaAg22P.10.000032
M44R44SagGagT22P.10.000032
M44R44MaGgaTg22R.10.00018
M44R44KaGgaAg11A.2.50.000499
M44R44del1aGga-g11All0
M44R44NaGGaAC11All0
M44R44CAgGTgT11All0
M44R44XAGGTAA11All0
M44R44MaGgaTg11AY.1000.000046
M44R44SagGagT11AY.1020.000027
M44R44MaGgaTg11AY.1020.000027
M44R44RagGagA11AY.1160.000287
M44R44KaGGaAA11AY.1170.000085
M44R44MaGgaTg11AY.1180.000063
M44R44delAGG---11AY.1200.000037
M44R44RagGagA11AY.140.000088
M44R44RagGagA11AY.160.00038
M44R44KaGgaAg11AY.200.000039
M44R44MaGgaTg11AY.200.000039
M44R44SagGagT11AY.200.000039
M44R44RagGagA11AY.240.000431
M44R44SagGagT11AY.260.000028
M44R44MaGgaTg11AY.270.000065
M44R44SagGagT11AY.29.10.000221
M44R44RagGagA11AY.30.00001
M44R44MaGgaTg11AY.30.00001
M44R44RagGagA11AY.300.000396
M44R44MaGgaTg11AY.360.000148
M44R44KaGgaAg11AY.390.000025
M44R44MaGgaTg11AY.4.20.000022
M44R44SagGagT11AY.4.50.000107
M44R44KaGgaAg11AY.420.00004
M44R44WAggTgg11AY.430.000004
M44R44SagGagT11AY.46.20.000635
M44R44MaGgaTg11AY.46.60.000072
M44R44KaGgaAg11AY.60.000041
M44R44KaGgaAg11AY.610.000105
M44R44SagGagT11AY.680.000274
M44R44delAGG---11AY.680.000274
M44R44SagGagT11AY.75.10.00018
M44R44XAGGTAA11AY.840.000437
M44R44SagGagT11AY.90.000068
M44R44GAggGgg11AY.90.000068
M44R44SagGagT11AY.9.20.000037
M44R44KaGgaAg11AY.920.000287
M44R44RAggCgg11AY.98.10.000048
M44R44RAggCgg11B0.000128
M44R44delAGG---11B.10.000009
M44R44CAgGTgT11B.10.000009
M44R44del1aGga-g11B.10.000009
M44R44MaGgaTg11B.1.10.000018
M44R44NaGGaAC11B.1.10.000018
M44R44RagGagA11B.1.1.250.000569
M44R44SagGagT11B.1.1.2770.000759
M44R44RagGagA11B.1.1.3110.000358
M44R44MaGgaTg11B.1.1.3480.000796
M44R44KaGgaAg11B.1.1.3710.010417
M44R44MaGgaTg11B.1.1.390.00051
M44R44KaGgaAg11B.1.1.4090.002833
M44R44SagGagT11B.1.1.4090.002833
M44R44MaGgaTg11B.1.1.4320.001266
M44R44RAggCgg11B.1.1.70.000001
M44R44GAggGgg11B.1.1.70.000001
M44R44SagGagT11B.1.1040.00369
M44R44SagGagT11B.1.160.160.000929
M44R44KaGGaAA11B.1.1610.017241
M44R44GAggGgg11B.1.1770.000013
M44R44MaGgaTg11B.1.1770.000013
M44R44KaGgaAg11B.1.1770.000013
M44R44SagGagT11B.1.177.560.000668
M44R44SagGagT11B.1.177.600.000218
M44R44MaGgaTg11B.1.177.730.000566
M44R44WAggTgg11B.1.2210.000071
M44R44SagGagT11B.1.2340.000132
M44R44WAggTgg11B.1.2580.000067
M44R44delAGG---11B.1.258.110.000396
M44R44KaGgaAg11B.1.258.140.00098
M44R44MaGgaTg11B.1.258.170.000104
M44R44KaGgaAg11B.1.3240.001605
M44R44SagGagT11B.1.36.180.00042
M44R44SagGagT11B.1.36.390.002217
M44R44SagGagT11B.1.3670.000792
M44R44SagGagT11B.1.3960.000706
M44R44KaGgaAg11B.1.4280.00102
M44R44KaGgaAg11B.1.466.20.000391
M44R44delAGG---11B.1.5770.000687
M44R44KaGgaAg11B.1.5770.000687
M44R44SagGagT11B.1.5770.000687
M44R44KaGgaAg11B.1.5960.000087
M44R44MaGgaTg11B.1.5960.000087
M44R44MaGgaTg11B.1.6100.003546
M44R44delAGG---11B.1.6270.00202
M44R44SagGagT11B.1.760.011364
M44R44SagGagT11B.310.003731
M44R44SagGagT11C.370.000116
M44R44GAggGgg11D.20.000075
M44R44delAGG---11P.10.000016
M44R44GAggGgg11P.1.10.000318
M44R44delAGG---11P.1.150.000232
M44R44MaGgaTg11P.1.150.000232
M44R44SagGagT11P.1.150.000232
M44R44SagGagT11P.20.000187
M44R44KaGgaAg11Q.80.000165