CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = M : CodonNum = 41

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
M41N41NsynaaCaaT1826318263126643-26645
M41N41SnonsynaAcaGc8888126643-26645
M41N41deldelAAC---3333126643-26645
M41N41YnonsynAacTac14130.92857126643-26645
M41N41YnonsynAaCTaT1410.071428626643-26645
M41N41TnonsynaAcaCc12110.91666726643-26645
M41N41TnonsynaACaCG1210.083333326643-26645
M41N41KnonsynaaCaaG740.57142926643-26645
M41N41KnonsynaaCaaA730.42857126643-26645
M41N41DnonsynAacGac55126643-26645
M41N41InonsynaAcaTc540.826643-26645
M41N41InonsynaACaTT510.226643-26645
M41N41FnonsynAACTTT210.526643-26645
M41N41FnonsynAAcTTc210.526643-26645
M41N41XnonsynAaCTaG11126643-26645
M41N41AnonsynAAcGCc11126643-26645
M41N41HnonsynAaCCaT11126643-26645

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
M41N41NaaCaaT1826318263All0.003493
M41N41NaaCaaT39023902B.1.3510.115993
M41N41NaaCaaT16771677B.1.617.20.006315
M41N41NaaCaaT16421642B.1.351.50.984412
M41N41NaaCaaT15421542B.1.1.70.00138
M41N41NaaCaaT10501050AY.40.001634
M41N41NaaCaaT770770B.1.1770.010139
M41N41NaaCaaT733733AY.430.003248
M41N41NaaCaaT644644AY.250.003874
M41N41NaaCaaT632632Q.20.38773
M41N41NaaCaaT553553P.1.17.10.483815
M41N41NaaCaaT499499AY.1030.003098
M41N41NaaCaaT304304B.1.20.002677
M41N41NaaCaaT291291AY.440.001771
M41N41NaaCaaT224224P.20.041807
M41N41NaaCaaT187187AY.70.036652
M41N41NaaCaaT181181B.1.1.3010.213443
M41N41NaaCaaT173173B.1.1.3480.137739
M41N41NaaCaaT169169AY.30.001681
M41N41NaaCaaT156156B.10.001429
M41N41NaaCaaT128128AY.460.013322
M41N41NaaCaaT112112P.10.001764
M41N41NaaCaaT111111B.1.5260.002609
M41N41NaaCaaT102102AY.390.002521
M41N41NaaCaaT9797B.1.10.00176
M41N41NaaCaaT9595B.1.5820.046614
M41N41SaAcaGc8888All0.000017
M41N41NaaCaaT7676B.1.5230.186275
M41N41NaaCaaT6565B.1.428.30.833333
M41N41NaaCaaT6363B.1.4290.001482
M41N41NaaCaaT5050AY.800.056433
M41N41NaaCaaT4747AY.46.60.003394
M41N41NaaCaaT4646AY.1020.00122
M41N41NaaCaaT4545B.1.5960.003921
M41N41NaaCaaT4545C.370.005223
M41N41NaaCaaT4242B.1.1.500.028513
M41N41NaaCaaT3737AY.290.000584
M41N41NaaCaaT3737AY.4.20.000802
M41N41NaaCaaT3737AY.540.003528
M41N41NaaCaaT3636AY.990.037775
M41N41NaaCaaT3535AY.50.000723
M41N41delAAC---3333All0.000006
M41N41NaaCaaT3232B.1.1470.024187
M41N41NaaCaaT3131B.1.1600.000967
M41N41NaaCaaT3131B.1.36.220.03744
M41N41SaAcaGc3030B.1.1.70.000027
M41N41NaaCaaT2929AY.1170.002451
M41N41NaaCaaT2929AY.200.001127
M41N41NaaCaaT2828AY.4.2.10.004172
M41N41NaaCaaT2828AY.470.000871
M41N41NaaCaaT2828B.1.1.4860.044164
M41N41NaaCaaT2828B.1.1.5190.001112
M41N41NaaCaaT2626AY.1190.000918
M41N41NaaCaaT2626B.1.214.20.015588
M41N41NaaCaaT2525AY.1000.00115
M41N41NaaCaaT2525AY.3.10.002131
M41N41NaaCaaT2525B.1.1.330.010522
M41N41NaaCaaT2424B.1.177.40.005065
M41N41NaaCaaT2424B.1.595.40.175182
M41N41NaaCaaT2222AY.1200.000818
M41N41NaaCaaT2222B.1.4270.001111
M41N41NaaCaaT2121B.1.428.20.7
M41N41NaaCaaT2020B.1.2340.002639
M41N41NaaCaaT2020B.1.5950.005219
M41N41NaaCaaT1919AY.260.000538
M41N41NaaCaaT1818AY.120.005689
M41N41NaaCaaT1818AY.98.10.000872
M41N41NaaCaaT1717AY.110.022758
M41N41NaaCaaT1717AY.750.000952
M41N41NaaCaaT1616AY.46.40.002632
M41N41NaaCaaT1616AY.99.20.001475
M41N41NaaCaaT1616B.1.1.280.00498
M41N41NaaCaaT1616B.1.1.700.005457
M41N41NaaCaaT1515AY.330.001002
M41N41NaaCaaT1515B.1.438.10.001609
M41N41NaaCaaT1515B.1.6370.001096
M41N41YAacTac1314All0.000002
M41N41YAaCTaT114All0
M41N41SaAcaGc1414AY.40.000022
M41N41NaaCaaT1414AY.9.20.000514
M41N41NaaCaaT1414B.1.177.600.003058
M41N41NaaCaaT1414B.1.2580.000932
M41N41NaaCaaT1313B.1.177.540.007884
M41N41TaAcaCc1112All0.000002
M41N41TaACaCG112All0
M41N41NaaCaaT1212AY.230.000837
M41N41SaAcaGc1212AY.440.000073
M41N41delAAC---1212B.1.177.210.000918
M41N41NaaCaaT1212B.1.2400.002587
M41N41NaaCaaT1212B.1.5090.01039
M41N41NaaCaaT1111AY.450.001339
M41N41NaaCaaT1111AY.840.004812
M41N41NaaCaaT1111B.1.617.10.001419
M41N41NaaCaaT1111B.1.6270.022222
M41N41NaaCaaT1111P.1.140.000526
M41N41NaaCaaT1010AY.90.000676
M41N41NaaCaaT1010B.1.1.2840.001074
M41N41NaaCaaT99AY.1180.000564
M41N41NaaCaaT99AY.130.001449
M41N41NaaCaaT99B.1.1.4340.003137
M41N41NaaCaaT99B.1.2430.000626
M41N41NaaCaaT99B.1.3110.002471
M41N41NaaCaaT99B.1.3180.346154
M41N41NaaCaaT99B.1.3960.006351
M41N41NaaCaaT99B.1.6210.000797
M41N41NaaCaaT99B.1.6320.060403
M41N41NaaCaaT88AY.100.00424
M41N41NaaCaaT88AY.340.000776
M41N41NaaCaaT88AY.4.50.00086
M41N41NaaCaaT88AY.420.000322
M41N41NaaCaaT88AY.700.001668
M41N41NaaCaaT88AY.790.009685
M41N41NaaCaaT88B.1.1.10.002614
M41N41NaaCaaT88B.1.177.720.027119
M41N41NaaCaaT88B.1.177.860.001468
M41N41NaaCaaT88B.1.2810.173913
M41N41NaaCaaT88B.1.3700.064
M41N41NaaCaaT88B.1.4080.02952
M41N41SaAcaGc88B.1.4220.006499
M41N41SaAcaGc88B.1.617.20.00003
M41N41KaaCaaG47All0.000001
M41N41KaaCaaA37All0.000001
M41N41NaaCaaT77AY.1160.002007
M41N41NaaCaaT77AY.920.002011
M41N41NaaCaaT77AY.950.005327
M41N41NaaCaaT77B.1.1.2140.000388
M41N41NaaCaaT77B.1.258.170.000728
M41N41NaaCaaT77B.1.360.001021
M41N41NaaCaaT66AY.1130.000854
M41N41NaaCaaT66AY.46.20.003812
M41N41NaaCaaT66AY.9.10.000502
M41N41NaaCaaT66B.1.1.250.003411
M41N41NaaCaaT66B.1.1.4160.00543
M41N41NaaCaaT66B.1.1.630.002315
M41N41delAAC---66B.1.1.70.000005
M41N41NaaCaaT66B.1.416.10.009375
M41N41NaaCaaT66B.1.5240.008439
M41N41NaaCaaT66B.1.5250.000679
M41N41NaaCaaT66B.1.5680.006667
M41N41NaaCaaT66P.1.160.002245
M41N41DAacGac55All0.000001
M41N41IaAcaTc45All0.000001
M41N41IaACaTT15All0
M41N41NaaCaaT55AY.1080.005513
M41N41NaaCaaT55AY.320.002662
M41N41NaaCaaT55B.1.1.3060.002192
M41N41NaaCaaT55B.1.1.3970.011261
M41N41NaaCaaT55B.1.1.5180.031646
M41N41NaaCaaT55B.1.2210.000355
M41N41NaaCaaT55B.1.258.110.001982
M41N41NaaCaaT55B.1.4000.002145
M41N41NaaCaaT55B.1.466.20.001956
M41N41NaaCaaT55B.1.80.009862
M41N41NaaCaaT55P.1.170.000809
M41N41NaaCaaT55P.1.70.001596
M41N41NaaCaaT44AD.20.000876
M41N41NaaCaaT44AY.10.001583
M41N41NaaCaaT44AY.380.001997
M41N41NaaCaaT44AY.5.40.001107
M41N41NaaCaaT44AY.650.002132
M41N41NaaCaaT44AY.980.000316
M41N41NaaCaaT44B.1.1.2910.00297
M41N41NaaCaaT44B.1.1.3540.017544
M41N41NaaCaaT44B.1.1.3690.001785
M41N41NaaCaaT44B.1.1.370.000771
M41N41NaaCaaT44B.1.177.170.003284
M41N41NaaCaaT44B.1.177.210.000306
M41N41NaaCaaT44B.1.2320.002149
M41N41NaaCaaT44B.1.36.290.002069
M41N41NaaCaaT44B.1.36.80.004
M41N41NaaCaaT44B.1.4330.01278
M41N41NaaCaaT44B.1.4700.005618
M41N41NaaCaaT44B.1.5300.028571
M41N41NaaCaaT44B.1.6340.013699
M41N41NaaCaaT44P.1.150.000929
M41N41NaaCaaT44Q.80.00066
M41N41NaaCaaT33AY.1100.000338
M41N41NaaCaaT33AY.120.20.003856
M41N41NaaCaaT33AY.140.000264
M41N41NaaCaaT33AY.270.000194
M41N41NaaCaaT33AY.39.10.000119
M41N41NaaCaaT33AY.400.002893
M41N41NaaCaaT33AY.530.000863
M41N41NaaCaaT33AY.60.000123
M41N41NaaCaaT33AY.610.000314
M41N41NaaCaaT33AY.75.10.000541
M41N41NaaCaaT33AY.910.002191
M41N41NaaCaaT33B0.000383
M41N41NaaCaaT33B.1.1.1700.003741
M41N41NaaCaaT33B.1.1.3170.001235
M41N41NaaCaaT33B.1.1.3330.003229
M41N41NaaCaaT33B.1.1.390.001529
M41N41NaaCaaT33B.1.1.4170.008108
M41N41NaaCaaT33B.1.177.160.001993
M41N41NaaCaaT33B.1.2060.002447
M41N41NaaCaaT33B.1.351.30.002629
M41N41NaaCaaT33B.1.36.170.001482
M41N41NaaCaaT33B.1.3690.000856
M41N41NaaCaaT33B.1.5170.001281
M41N41YAacTac33B.1.5250.000339
M41N41NaaCaaT33B.1.5970.013889
M41N41NaaCaaT33P.1.120.001452
M41N41NaaCaaT33Q.10.000379
M41N41delAAC---220.111111
M41N41YAaCTaT120.055556
M41N41IaACaTT120.055556
M41N41FAACTTT120.055556
M41N41YAacTac120.055556
M41N41IaAcaTc120.055556
M41N41FAAcTTc120.055556
M41N41NaaCaaT22A0.000774
M41N41FAACTTT12All0
M41N41FAAcTTc12All0
M41N41NaaCaaT22AY.16.10.00094
M41N41TaAcaCc22AY.250.000012
M41N41NaaCaaT22AY.29.10.000441
M41N41SaAcaGc22AY.30.00002
M41N41NaaCaaT22AY.4.40.000818
M41N41delAAC---22AY.430.000009
M41N41NaaCaaT22AY.5.10.007519
M41N41NaaCaaT22AY.5.30.000675
M41N41YAacTac22AY.610.00021
M41N41NaaCaaT22AY.620.000871
M41N41NaaCaaT22AY.630.000774
M41N41NaaCaaT22AY.80.001212
M41N41NaaCaaT22AY.820.002714
M41N41NaaCaaT22AY.850.000854
M41N41NaaCaaT22AY.890.009804
M41N41NaaCaaT22AY.930.000546
M41N41TaACaCG12B.1.10.000018
M41N41TaAcaCc12B.1.10.000018
M41N41NaaCaaT22B.1.1.2160.001781
M41N41NaaCaaT22B.1.1.2220.000408
M41N41NaaCaaT22B.1.1.2300.018349
M41N41NaaCaaT22B.1.1.2770.001517
M41N41NaaCaaT22B.1.1.3180.000604
M41N41YAacTac22B.1.1.3180.000604
M41N41NaaCaaT22B.1.1.3220.017544
M41N41NaaCaaT22B.1.1.3750.02381
M41N41NaaCaaT22B.1.1.4090.005666
M41N41YAacTac22B.1.1.70.000002
M41N41NaaCaaT22B.1.1280.001271
M41N41NaaCaaT22B.1.177.750.002081
M41N41NaaCaaT22B.1.177.80.001505
M41N41NaaCaaT22B.1.177.810.000379
M41N41NaaCaaT22B.1.220.002635
M41N41NaaCaaT22B.1.2390.002442
M41N41NaaCaaT22B.1.3240.00321
M41N41NaaCaaT22B.1.3400.008584
M41N41NaaCaaT22B.1.3460.002621
M41N41NaaCaaT22B.1.3490.00143
M41N41delAAC---22B.1.3510.000059
M41N41NaaCaaT22B.1.36.160.002849
M41N41NaaCaaT22B.1.36.310.003503
M41N41NaaCaaT22B.1.3610.002577
M41N41NaaCaaT22B.1.3810.015625
M41N41NaaCaaT22B.1.4160.002538
M41N41NaaCaaT22B.1.4280.002041
M41N41NaaCaaT22B.1.4970.00063
M41N41NaaCaaT22B.1.5050.008772
M41N41NaaCaaT22B.1.5640.000852
M41N41NaaCaaT22B.1.5650.001621
M41N41NaaCaaT22B.1.621.10.001012
M41N41NaaCaaT22B.6.60.001778
M41N41NaaCaaT22C.36.30.001134
M41N41NaaCaaT22P.1.130.001797
M41N41NaaCaaT22P.1.20.002312
M41N41NaaCaaT22P.1.40.001953
M41N41SaAcaGc22W.10.017391
M41N41NaaCaaT110.055556
M41N41KaaCaaA110.055556
M41N41NaaCaaT11A.10.000282
M41N41NaaCaaT11A.2.5.10.004808
M41N41NaaCaaT11A.230.010526
M41N41NaaCaaT11A.280.002646
M41N41NaaCaaT11AE.80.000489
M41N41HAaCCaT11All0
M41N41AAAcGCc11All0
M41N41XAaCTaG11All0
M41N41NaaCaaT11AM.40.003571
M41N41SaAcaGc11AY.1030.000006
M41N41DAacGac11AY.1030.000006
M41N41NaaCaaT11AY.1040.001984
M41N41NaaCaaT11AY.1050.000643
M41N41NaaCaaT11AY.1060.000335
M41N41SaAcaGc11AY.1170.000085
M41N41delAAC---11AY.1200.000037
M41N41NaaCaaT11AY.120.10.000321
M41N41NaaCaaT11AY.1210.000135
M41N41NaaCaaT11AY.190.00114
M41N41NaaCaaT11AY.240.000431
M41N41TaAcaCc11AY.340.000097
M41N41NaaCaaT11AY.34.10.00051
M41N41NaaCaaT11AY.350.000233
M41N41NaaCaaT11AY.360.000148
M41N41delAAC---11AY.4.50.000107
M41N41NaaCaaT11AY.410.000294
M41N41SaAcaGc11AY.430.000004
M41N41TaAcaCc11AY.430.000004
M41N41TaAcaCc11AY.440.000006
M41N41NaaCaaT11AY.46.10.001027
M41N41NaaCaaT11AY.46.30.000934
M41N41NaaCaaT11AY.46.50.000198
M41N41SaAcaGc11AY.470.000031
M41N41NaaCaaT11AY.520.000814
M41N41NaaCaaT11AY.550.000917
M41N41NaaCaaT11AY.590.00053
M41N41NaaCaaT11AY.600.000938
M41N41delAAC---11AY.680.000274
M41N41NaaCaaT11AY.680.000274
M41N41NaaCaaT11AY.690.000187
M41N41NaaCaaT11AY.7.10.000113
M41N41NaaCaaT11AY.7.20.000559
M41N41NaaCaaT11AY.710.000475
M41N41NaaCaaT11AY.740.000116
M41N41KaaCaaG11AY.75.10.00018
M41N41DAacGac11AY.840.000437
M41N41NaaCaaT11AY.870.000833
M41N41NaaCaaT11AY.880.000884
M41N41SaAcaGc11AY.98.10.000048
M41N41SaAcaGc11B0.000128
M41N41delAAC---11B.10.000009
M41N41TaAcaCc11B.10.000009
M41N41YAacTac11B.10.000009
M41N41KaaCaaG11B.1.10.000018
M41N41NaaCaaT11B.1.1.1280.007092
M41N41NaaCaaT11B.1.1.1610.003534
M41N41NaaCaaT11B.1.1.1980.001468
M41N41NaaCaaT11B.1.1.2100.005714
M41N41SaAcaGc11B.1.1.2140.000055
M41N41NaaCaaT11B.1.1.2310.003096
M41N41NaaCaaT11B.1.1.3090.005848
M41N41NaaCaaT11B.1.1.3110.000358
M41N41NaaCaaT11B.1.1.3980.003226
M41N41NaaCaaT11B.1.1.40.002976
M41N41NaaCaaT11B.1.1.4070.041667
M41N41NaaCaaT11B.1.1.4580.041667
M41N41NaaCaaT11B.1.1.4640.001473
M41N41NaaCaaT11B.1.1.470.005348
M41N41NaaCaaT11B.1.1.510.001718
M41N41NaaCaaT11B.1.1.5260.003546
M41N41NaaCaaT11B.1.1.570.011494
M41N41KaaCaaG11B.1.1.70.000001
M41N41HAaCCaT11B.1.1.70.000001
M41N41TaAcaCc11B.1.1.70.000001
M41N41IaAcaTc11B.1.1.70.000001
M41N41DAacGac11B.1.1.70.000001
M41N41NaaCaaT11B.1.1040.00369
M41N41NaaCaaT11B.1.1110.001175
M41N41NaaCaaT11B.1.1160.011628
M41N41NaaCaaT11B.1.1260.001276
M41N41TaAcaCc11B.1.1600.000031
M41N41NaaCaaT11B.1.160.160.000929
M41N41NaaCaaT11B.1.160.280.002924
M41N41SaAcaGc11B.1.1610.017241
M41N41NaaCaaT11B.1.177.120.000152
M41N41NaaCaaT11B.1.177.180.00116
M41N41NaaCaaT11B.1.177.230.003236
M41N41NaaCaaT11B.1.177.350.000691
M41N41NaaCaaT11B.1.177.440.000519
M41N41NaaCaaT11B.1.177.510.004566
M41N41NaaCaaT11B.1.177.520.001757
M41N41SaAcaGc11B.1.177.540.000606
M41N41NaaCaaT11B.1.177.560.000668
M41N41NaaCaaT11B.1.177.730.000566
M41N41NaaCaaT11B.1.177.770.000726
M41N41NaaCaaT11B.1.177.790.002342
M41N41DAacGac11B.1.20.000009
M41N41NaaCaaT11B.1.2120.016667
M41N41NaaCaaT11B.1.2140.003663
M41N41NaaCaaT11B.1.2180.005155
M41N41IaAcaTc11B.1.221.30.000833
M41N41NaaCaaT11B.1.221.30.000833
M41N41KaaCaaA11B.1.2340.000132
M41N41NaaCaaT11B.1.2360.002053
M41N41NaaCaaT11B.1.240.20.030303
M41N41NaaCaaT11B.1.2410.000812
M41N41NaaCaaT11B.1.2520.006623
M41N41delAAC---11B.1.258.110.000396
M41N41NaaCaaT11B.1.2640.012346
M41N41NaaCaaT11B.1.2650.001271
M41N41NaaCaaT11B.1.2980.002114
M41N41NaaCaaT11B.1.3200.001245
M41N41NaaCaaT11B.1.3360.002439
M41N41IaAcaTc11B.1.3510.00003
M41N41NaaCaaT11B.1.351.20.000303
M41N41NaaCaaT11B.1.36.180.00042
M41N41NaaCaaT11B.1.36.270.000763
M41N41NaaCaaT11B.1.36.360.000602
M41N41NaaCaaT11B.1.36.390.002217
M41N41NaaCaaT11B.1.36.90.003215
M41N41NaaCaaT11B.1.3660.004878
M41N41NaaCaaT11B.1.3750.00082
M41N41NaaCaaT11B.1.3910.001127
M41N41NaaCaaT11B.1.4090.000781
M41N41NaaCaaT11B.1.440.008333
M41N41NaaCaaT11B.1.4710.002732
M41N41SaAcaGc11B.1.4850.014925
M41N41SaAcaGc11B.1.5260.000024
M41N41NaaCaaT11B.1.5310.083333
M41N41NaaCaaT11B.1.5380.008065
M41N41NaaCaaT11B.1.5440.006024
M41N41NaaCaaT11B.1.5450.014493
M41N41NaaCaaT11B.1.5610.000397
M41N41YAacTac11B.1.5750.000303
M41N41delAAC---11B.1.5770.000687
M41N41NaaCaaT11B.1.5800.004065
M41N41KaaCaaA11B.1.5900.004545
M41N41NaaCaaT11B.1.5900.004545
M41N41NaaCaaT11B.1.6050.005952
M41N41NaaCaaT11B.1.6060.006024
M41N41NaaCaaT11B.1.6090.000479
M41N41TaAcaCc11B.1.617.10.000129
M41N41AAAcGCc11B.1.617.20.000004
M41N41NaaCaaT11B.1.6200.000946
M41N41delAAC---11B.1.6270.00202
M41N41NaaCaaT11B.1.6280.000352
M41N41NaaCaaT11B.1.6360.006711
M41N41NaaCaaT11B.1.930.000934
M41N41NaaCaaT11B.30.000831
M41N41NaaCaaT11B.400.000364
M41N41NaaCaaT11C.300.001727
M41N41NaaCaaT11C.360.000911
M41N41NaaCaaT11C.37.10.002618
M41N41NaaCaaT11C.40.01
M41N41NaaCaaT11C.60.037037
M41N41NaaCaaT11D.20.000075
M41N41NaaCaaT11N.90.005952
M41N41delAAC---11P.10.000016
M41N41YAacTac11P.1.10.000318
M41N41XAaCTaG11P.1.10.000318
M41N41NaaCaaT11P.1.10.000318
M41N41TaAcaCc11P.1.10.000318
M41N41KaaCaaG11P.1.10.000318
M41N41NaaCaaT11P.1.100.000269
M41N41delAAC---11P.1.150.000232
M41N41SaAcaGc11P.1.170.000162
M41N41NaaCaaT11P.30.001595
M41N41NaaCaaT11Q.30.000145
M41N41NaaCaaT11R.10.00009
M41N41DAacGac11R.10.00009