CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
M | 3 | D3G | nonsyn | gAt | gGt | 4354 | 4354 | 1 | 26529-26531 | |
M | 3 | D3Y | nonsyn | Gat | Tat | 900 | 900 | 1 | 26529-26531 | |
M | 3 | D3H | nonsyn | Gat | Cat | 619 | 619 | 1 | 26529-26531 | |
M | 3 | D3D | syn | gaT | gaC | 573 | 573 | 1 | 26529-26531 | |
M | 3 | D3N | nonsyn | Gat | Aat | 200 | 200 | 1 | 26529-26531 | |
M | 3 | D3V | nonsyn | gAt | gTt | 90 | 90 | 1 | 26529-26531 | |
M | 3 | D3del | del | GAT | --- | 56 | 56 | 1 | 26529-26531 | |
M | 3 | D3E | nonsyn | gaT | gaG | 49 | 42 | 0.857143 | 26529-26531 | |
M | 3 | D3E | nonsyn | gaT | gaA | 49 | 7 | 0.142857 | 26529-26531 | |
M | 3 | D3A | nonsyn | gAt | gCt | 41 | 41 | 1 | 26529-26531 | |
M | 3 | D3del1 | del | Gat | -at | 4 | 3 | 0.75 | 26529-26531 | |
M | 3 | D3del1 | del | gAt | g-t | 4 | 1 | 0.25 | 26529-26531 | |
M | 3 | D3X | nonsyn | GaT | TaA | 2 | 1 | 0.5 | 26529-26531 | |
M | 3 | D3X | nonsyn | GaT | TaG | 2 | 1 | 0.5 | 26529-26531 | |
M | 3 | D3K | nonsyn | GaT | AaG | 1 | 1 | 1 | 26529-26531 | |
M | 3 | D3I | nonsyn | GAt | ATt | 1 | 1 | 1 | 26529-26531 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
M | 3 | D3G | gAt | gGt | 4354 | 4354 | All | 0.000833 |
M | 3 | D3G | gAt | gGt | 1548 | 1548 | B.1 | 0.014179 |
M | 3 | D3G | gAt | gGt | 1533 | 1533 | B.1.128 | 0.973952 |
M | 3 | D3Y | Gat | Tat | 900 | 900 | All | 0.000172 |
M | 3 | D3H | Gat | Cat | 619 | 619 | All | 0.000118 |
M | 3 | D3D | gaT | gaC | 573 | 573 | All | 0.00011 |
M | 3 | D3G | gAt | gGt | 449 | 449 | B.1.127 | 0.986813 |
M | 3 | D3N | Gat | Aat | 200 | 200 | All | 0.000038 |
M | 3 | D3G | gAt | gGt | 135 | 135 | B.1.617.2 | 0.000508 |
M | 3 | D3D | gaT | gaC | 134 | 134 | B.1.617.2 | 0.000505 |
M | 3 | D3Y | Gat | Tat | 130 | 130 | B.1.1.7 | 0.000116 |
M | 3 | D3H | Gat | Cat | 125 | 125 | B.1.2 | 0.001101 |
M | 3 | D3H | Gat | Cat | 117 | 117 | AY.26 | 0.003312 |
M | 3 | D3Y | Gat | Tat | 116 | 116 | AY.4 | 0.000181 |
M | 3 | D3G | gAt | gGt | 99 | 99 | B.1.1.7 | 0.000089 |
M | 3 | D3V | gAt | gTt | 90 | 90 | All | 0.000017 |
M | 3 | D3G | gAt | gGt | 63 | 63 | AY.44 | 0.000383 |
M | 3 | D3Y | Gat | Tat | 62 | 62 | B.1.617.2 | 0.000233 |
M | 3 | D3H | Gat | Cat | 59 | 59 | B.1.1.7 | 0.000053 |
M | 3 | D3del | GAT | --- | 56 | 56 | All | 0.000011 |
M | 3 | D3G | gAt | gGt | 53 | 53 | B.1.96 | 1 |
M | 3 | D3E | gaT | gaG | 42 | 49 | All | 0.000008 |
M | 3 | D3E | gaT | gaA | 7 | 49 | All | 0.000001 |
M | 3 | D3H | Gat | Cat | 49 | 49 | AY.4 | 0.000076 |
M | 3 | D3D | gaT | gaC | 46 | 46 | B.1.1.7 | 0.000041 |
M | 3 | D3N | Gat | Aat | 43 | 43 | B.1.1.7 | 0.000038 |
M | 3 | D3A | gAt | gCt | 41 | 41 | All | 0.000008 |
M | 3 | D3Y | Gat | Tat | 41 | 41 | AY.43 | 0.000182 |
M | 3 | D3G | gAt | gGt | 40 | 40 | B.1.205 | 0.952381 |
M | 3 | D3G | gAt | gGt | 39 | 39 | B.1.140 | 0.735849 |
M | 3 | D3G | gAt | gGt | 39 | 39 | B.1.97 | 1 |
M | 3 | D3D | gaT | gaC | 39 | 39 | P.1 | 0.000614 |
M | 3 | D3V | gAt | gTt | 38 | 38 | B.1.1.7 | 0.000034 |
M | 3 | D3Y | Gat | Tat | 35 | 35 | AY.103 | 0.000217 |
M | 3 | D3G | gAt | gGt | 35 | 35 | AY.4 | 0.000054 |
M | 3 | D3D | gaT | gaC | 33 | 33 | AY.99.2 | 0.003041 |
M | 3 | D3D | gaT | gaC | 32 | 32 | AY.25 | 0.000192 |
M | 3 | D3D | gaT | gaC | 32 | 32 | R.1 | 0.00288 |
M | 3 | D3N | Gat | Aat | 28 | 28 | AY.3 | 0.000278 |
M | 3 | D3D | gaT | gaC | 26 | 26 | AY.4 | 0.00004 |
M | 3 | D3Y | Gat | Tat | 25 | 25 | AY.25 | 0.00015 |
M | 3 | D3D | gaT | gaC | 24 | 24 | AY.43 | 0.000106 |
M | 3 | D3H | Gat | Cat | 23 | 23 | AY.44 | 0.00014 |
M | 3 | D3G | gAt | gGt | 23 | 23 | B.1.2 | 0.000203 |
M | 3 | D3D | gaT | gaC | 21 | 21 | AY.44 | 0.000128 |
M | 3 | D3Y | Gat | Tat | 21 | 21 | AY.44 | 0.000128 |
M | 3 | D3D | gaT | gaC | 21 | 21 | B.1.1 | 0.000381 |
M | 3 | D3D | gaT | gaC | 21 | 21 | C.37 | 0.002437 |
M | 3 | D3Y | Gat | Tat | 20 | 20 | AY.102 | 0.00053 |
M | 3 | D3Y | Gat | Tat | 19 | 19 | AY.3 | 0.000189 |
M | 3 | D3Y | Gat | Tat | 18 | 18 | AY.27 | 0.001165 |
M | 3 | D3G | gAt | gGt | 18 | 18 | B.1.1 | 0.000327 |
M | 3 | D3G | gAt | gGt | 17 | 17 | AY.103 | 0.000106 |
M | 3 | D3H | Gat | Cat | 17 | 17 | AY.6 | 0.000699 |
M | 3 | D3H | Gat | Cat | 17 | 17 | AY.80 | 0.019187 |
M | 3 | D3Y | Gat | Tat | 16 | 16 | AY.47 | 0.000498 |
M | 3 | D3E | gaT | gaG | 14 | 16 | B.1.1.7 | 0.000013 |
M | 3 | D3E | gaT | gaA | 2 | 16 | B.1.1.7 | 0.000002 |
M | 3 | D3Y | Gat | Tat | 15 | 15 | AY.39.1 | 0.000594 |
M | 3 | D3N | Gat | Aat | 15 | 15 | AY.4 | 0.000023 |
M | 3 | D3Y | Gat | Tat | 15 | 15 | AY.42 | 0.000603 |
M | 3 | D3Y | Gat | Tat | 15 | 15 | B.1 | 0.000137 |
M | 3 | D3G | gAt | gGt | 15 | 15 | B.1.177 | 0.000198 |
M | 3 | D3Y | Gat | Tat | 15 | 15 | B.1.2 | 0.000132 |
M | 3 | D3H | Gat | Cat | 14 | 14 | AY.43 | 0.000062 |
M | 3 | D3Y | Gat | Tat | 14 | 14 | B.1.561 | 0.005558 |
M | 3 | D3N | Gat | Aat | 14 | 14 | B.1.617.2 | 0.000053 |
M | 3 | D3Y | Gat | Tat | 13 | 13 | AY.19 | 0.014823 |
M | 3 | D3H | Gat | Cat | 13 | 13 | AY.5 | 0.000268 |
M | 3 | D3G | gAt | gGt | 12 | 12 | B.1.397 | 0.058252 |
M | 3 | D3D | gaT | gaC | 11 | 11 | AY.102 | 0.000292 |
M | 3 | D3H | Gat | Cat | 11 | 11 | AY.103 | 0.000068 |
M | 3 | D3Y | Gat | Tat | 11 | 11 | AY.121 | 0.001488 |
M | 3 | D3H | Gat | Cat | 11 | 11 | AY.25 | 0.000066 |
M | 3 | D3D | gaT | gaC | 11 | 11 | AY.29 | 0.000174 |
M | 3 | D3Y | Gat | Tat | 11 | 11 | AY.39 | 0.000272 |
M | 3 | D3G | gAt | gGt | 11 | 11 | AY.43 | 0.000049 |
M | 3 | D3E | gaT | gaG | 11 | 11 | B.1.1.222 | 0.002244 |
M | 3 | D3Y | Gat | Tat | 11 | 11 | B.1.1.284 | 0.001181 |
M | 3 | D3Y | Gat | Tat | 11 | 11 | B.1.93 | 0.010271 |
M | 3 | D3G | gAt | gGt | 10 | 10 | AY.102 | 0.000265 |
M | 3 | D3N | Gat | Aat | 10 | 10 | AY.103 | 0.000062 |
M | 3 | D3Y | Gat | Tat | 10 | 10 | AY.29 | 0.000158 |
M | 3 | D3Y | Gat | Tat | 10 | 10 | B.1.1 | 0.000181 |
M | 3 | D3D | gaT | gaC | 10 | 10 | B.1.2 | 0.000088 |
M | 3 | D3H | Gat | Cat | 10 | 10 | B.1.617.1 | 0.00129 |
M | 3 | D3H | Gat | Cat | 10 | 10 | B.1.617.2 | 0.000038 |
M | 3 | D3Y | Gat | Tat | 10 | 10 | C.37 | 0.001161 |
M | 3 | D3G | gAt | gGt | 9 | 9 | AY.25 | 0.000054 |
M | 3 | D3N | Gat | Aat | 9 | 9 | AY.43 | 0.00004 |
M | 3 | D3del | GAT | --- | 9 | 9 | B.1.1.7 | 0.000008 |
M | 3 | D3A | gAt | gCt | 9 | 9 | B.1.1.7 | 0.000008 |
M | 3 | D3Y | Gat | Tat | 9 | 9 | B.1.160 | 0.000281 |
M | 3 | D3Y | Gat | Tat | 9 | 9 | B.1.177 | 0.000119 |
M | 3 | D3N | Gat | Aat | 9 | 9 | B.1.429 | 0.000212 |
M | 3 | D3Y | Gat | Tat | 8 | 8 | AY.4.2 | 0.000174 |
M | 3 | D3del | GAT | --- | 8 | 8 | AY.46.6 | 0.000578 |
M | 3 | D3D | gaT | gaC | 8 | 8 | AY.75 | 0.000448 |
M | 3 | D3D | gaT | gaC | 8 | 8 | AY.9.2 | 0.000294 |
M | 3 | D3H | Gat | Cat | 8 | 8 | B.1 | 0.000073 |
M | 3 | D3V | gAt | gTt | 8 | 8 | B.1 | 0.000073 |
M | 3 | D3G | gAt | gGt | 8 | 8 | B.1.177.82 | 0.003819 |
M | 3 | D3N | Gat | Aat | 8 | 8 | B.1.2 | 0.00007 |
M | 3 | D3G | gAt | gGt | 8 | 8 | P.1 | 0.000126 |
M | 3 | D3G | gAt | gGt | 7 | 7 | AY.39 | 0.000173 |
M | 3 | D3Y | Gat | Tat | 7 | 7 | AY.46.4 | 0.001152 |
M | 3 | D3H | Gat | Cat | 7 | 7 | AY.47 | 0.000218 |
M | 3 | D3H | Gat | Cat | 7 | 7 | AY.63 | 0.002708 |
M | 3 | D3D | gaT | gaC | 7 | 7 | AY.98 | 0.000553 |
M | 3 | D3N | Gat | Aat | 7 | 7 | B.1.177 | 0.000092 |
M | 3 | D3G | gAt | gGt | 7 | 7 | B.1.241 | 0.005682 |
M | 3 | D3Y | Gat | Tat | 7 | 7 | B.1.258 | 0.000466 |
M | 3 | D3H | Gat | Cat | 7 | 7 | B.1.526 | 0.000165 |
M | 3 | D3Y | Gat | Tat | 7 | 7 | P.1 | 0.00011 |
M | 3 | D3H | Gat | Cat | 6 | 6 | AY.102 | 0.000159 |
M | 3 | D3Y | Gat | Tat | 6 | 6 | AY.120 | 0.000223 |
M | 3 | D3G | gAt | gGt | 6 | 6 | AY.27 | 0.000388 |
M | 3 | D3Y | Gat | Tat | 6 | 6 | AY.4.2.1 | 0.000894 |
M | 3 | D3N | Gat | Aat | 6 | 6 | AY.44 | 0.000037 |
M | 3 | D3H | Gat | Cat | 6 | 6 | AY.46.6 | 0.000433 |
M | 3 | D3G | gAt | gGt | 6 | 6 | AY.98.1 | 0.000291 |
M | 3 | D3G | gAt | gGt | 6 | 6 | AY.99.2 | 0.000553 |
M | 3 | D3del | GAT | --- | 6 | 6 | B.1 | 0.000055 |
M | 3 | D3N | Gat | Aat | 6 | 6 | B.1 | 0.000055 |
M | 3 | D3D | gaT | gaC | 6 | 6 | B.1.160 | 0.000187 |
M | 3 | D3V | gAt | gTt | 6 | 6 | B.1.2 | 0.000053 |
M | 3 | D3G | gAt | gGt | 5 | 5 | AY.13 | 0.000805 |
M | 3 | D3A | gAt | gCt | 5 | 5 | AY.25 | 0.00003 |
M | 3 | D3G | gAt | gGt | 5 | 5 | AY.3 | 0.00005 |
M | 3 | D3V | gAt | gTt | 5 | 5 | AY.4 | 0.000008 |
M | 3 | D3del | GAT | --- | 5 | 5 | AY.4 | 0.000008 |
M | 3 | D3G | gAt | gGt | 5 | 5 | AY.40 | 0.004822 |
M | 3 | D3Y | Gat | Tat | 5 | 5 | AY.5 | 0.000103 |
M | 3 | D3G | gAt | gGt | 5 | 5 | AY.9.2 | 0.000184 |
M | 3 | D3Y | Gat | Tat | 5 | 5 | AY.98.1 | 0.000242 |
M | 3 | D3H | Gat | Cat | 5 | 5 | AY.98.1 | 0.000242 |
M | 3 | D3H | Gat | Cat | 5 | 5 | B.1.1 | 0.000091 |
M | 3 | D3H | Gat | Cat | 5 | 5 | B.1.1.189 | 0.007564 |
M | 3 | D3Y | Gat | Tat | 5 | 5 | B.1.104 | 0.01845 |
M | 3 | D3Y | Gat | Tat | 5 | 5 | B.1.177.16 | 0.003322 |
M | 3 | D3A | gAt | gCt | 5 | 5 | B.1.2 | 0.000044 |
M | 3 | D3H | Gat | Cat | 5 | 5 | B.1.525 | 0.000566 |
M | 3 | D3G | gAt | gGt | 5 | 5 | B.1.582 | 0.002453 |
M | 3 | D3del1 | Gat | -at | 3 | 4 | All | 0.000001 |
M | 3 | D3del1 | gAt | g-t | 1 | 4 | All | 0 |
M | 3 | D3N | Gat | Aat | 4 | 4 | AY.100 | 0.000184 |
M | 3 | D3V | gAt | gTt | 4 | 4 | AY.103 | 0.000025 |
M | 3 | D3G | gAt | gGt | 4 | 4 | AY.20 | 0.000155 |
M | 3 | D3H | Gat | Cat | 4 | 4 | AY.3 | 0.00004 |
M | 3 | D3Y | Gat | Tat | 4 | 4 | AY.3.1 | 0.000341 |
M | 3 | D3H | Gat | Cat | 4 | 4 | AY.39.1.1 | 0.002899 |
M | 3 | D3D | gaT | gaC | 4 | 4 | AY.47 | 0.000124 |
M | 3 | D3G | gAt | gGt | 4 | 4 | AY.47 | 0.000124 |
M | 3 | D3G | gAt | gGt | 4 | 4 | AY.54 | 0.000381 |
M | 3 | D3G | gAt | gGt | 4 | 4 | AY.59 | 0.002119 |
M | 3 | D3G | gAt | gGt | 4 | 4 | B | 0.000511 |
M | 3 | D3D | gaT | gaC | 4 | 4 | B.1.177 | 0.000053 |
M | 3 | D3G | gAt | gGt | 4 | 4 | B.1.177.16 | 0.002658 |
M | 3 | D3Y | Gat | Tat | 4 | 4 | B.1.177.4 | 0.000844 |
M | 3 | D3G | gAt | gGt | 4 | 4 | B.1.243 | 0.000278 |
M | 3 | D3Y | Gat | Tat | 4 | 4 | B.1.329 | 0.00243 |
M | 3 | D3D | gaT | gaC | 4 | 4 | B.1.427 | 0.000202 |
M | 3 | D3V | gAt | gTt | 4 | 4 | B.1.617.2 | 0.000015 |
M | 3 | D3D | gaT | gaC | 3 | 3 | AY.100 | 0.000138 |
M | 3 | D3A | gAt | gCt | 3 | 3 | AY.102 | 0.00008 |
M | 3 | D3D | gaT | gaC | 3 | 3 | AY.103 | 0.000019 |
M | 3 | D3N | Gat | Aat | 3 | 3 | AY.120 | 0.000112 |
M | 3 | D3H | Gat | Cat | 3 | 3 | AY.20 | 0.000117 |
M | 3 | D3Y | Gat | Tat | 3 | 3 | AY.20 | 0.000117 |
M | 3 | D3Y | Gat | Tat | 3 | 3 | AY.23 | 0.000209 |
M | 3 | D3del | GAT | --- | 3 | 3 | AY.25 | 0.000018 |
M | 3 | D3N | Gat | Aat | 3 | 3 | AY.25 | 0.000018 |
M | 3 | D3H | Gat | Cat | 3 | 3 | AY.29 | 0.000047 |
M | 3 | D3G | gAt | gGt | 3 | 3 | AY.29.1 | 0.000662 |
M | 3 | D3D | gaT | gaC | 3 | 3 | AY.3 | 0.00003 |
M | 3 | D3G | gAt | gGt | 3 | 3 | AY.34 | 0.000291 |
M | 3 | D3G | gAt | gGt | 3 | 3 | AY.35 | 0.000699 |
M | 3 | D3D | gaT | gaC | 3 | 3 | AY.39 | 0.000074 |
M | 3 | D3D | gaT | gaC | 3 | 3 | AY.39.1 | 0.000119 |
M | 3 | D3E | gaT | gaG | 3 | 3 | AY.4 | 0.000005 |
M | 3 | D3D | gaT | gaC | 3 | 3 | AY.4.2 | 0.000065 |
M | 3 | D3Y | Gat | Tat | 3 | 3 | AY.4.5 | 0.000322 |
M | 3 | D3V | gAt | gTt | 3 | 3 | AY.43 | 0.000013 |
M | 3 | D3Y | Gat | Tat | 3 | 3 | AY.53 | 0.000863 |
M | 3 | D3G | gAt | gGt | 3 | 3 | AY.67 | 0.001393 |
M | 3 | D3G | gAt | gGt | 3 | 3 | AY.68 | 0.000821 |
M | 3 | D3Y | Gat | Tat | 3 | 3 | AY.7 | 0.000588 |
M | 3 | D3D | gaT | gaC | 3 | 3 | AY.71 | 0.001425 |
M | 3 | D3G | gAt | gGt | 3 | 3 | AY.9.1 | 0.000251 |
M | 3 | D3Y | Gat | Tat | 3 | 3 | AY.99.2 | 0.000276 |
M | 3 | D3D | gaT | gaC | 3 | 3 | B.1 | 0.000027 |
M | 3 | D3Y | Gat | Tat | 3 | 3 | B.1.1.1 | 0.00098 |
M | 3 | D3Y | Gat | Tat | 3 | 3 | B.1.1.129 | 0.027523 |
M | 3 | D3Y | Gat | Tat | 3 | 3 | B.1.1.222 | 0.000612 |
M | 3 | D3H | Gat | Cat | 3 | 3 | B.1.1.33 | 0.001263 |
M | 3 | D3Y | Gat | Tat | 3 | 3 | B.1.1.369 | 0.001339 |
M | 3 | D3G | gAt | gGt | 3 | 3 | B.1.1.369 | 0.001339 |
M | 3 | D3G | gAt | gGt | 3 | 3 | B.1.160 | 0.000094 |
M | 3 | D3Y | Gat | Tat | 3 | 3 | B.1.177.21 | 0.000229 |
M | 3 | D3Y | Gat | Tat | 3 | 3 | B.1.243 | 0.000209 |
M | 3 | D3G | gAt | gGt | 3 | 3 | B.1.258 | 0.0002 |
M | 3 | D3Y | Gat | Tat | 3 | 3 | B.1.324 | 0.004815 |
M | 3 | D3Y | Gat | Tat | 3 | 3 | B.1.351 | 0.000089 |
M | 3 | D3H | Gat | Cat | 3 | 3 | B.1.351 | 0.000089 |
M | 3 | D3Y | Gat | Tat | 3 | 3 | B.1.429 | 0.000071 |
M | 3 | D3H | Gat | Cat | 3 | 3 | B.1.429 | 0.000071 |
M | 3 | D3V | gAt | gTt | 3 | 3 | B.1.526 | 0.000071 |
M | 3 | D3H | Gat | Cat | 3 | 3 | B.1.596 | 0.000261 |
M | 3 | D3G | gAt | gGt | 3 | 3 | B.1.623 | 0.001609 |
M | 3 | D3G | gAt | gGt | 3 | 3 | B.1.8 | 0.005917 |
M | 3 | D3Y | Gat | Tat | 3 | 3 | Q.7 | 0.003333 |
M | 3 | D3Y | Gat | Tat | 2 | 2 | 0.111111 | |
M | 3 | D3del | GAT | --- | 2 | 2 | 0.111111 | |
M | 3 | D3E | gaT | gaG | 1 | 2 | 0.055556 | |
M | 3 | D3X | GaT | TaA | 1 | 2 | 0.055556 | |
M | 3 | D3E | gaT | gaA | 1 | 2 | 0.055556 | |
M | 3 | D3X | GaT | TaG | 1 | 2 | 0.055556 | |
M | 3 | D3N | Gat | Aat | 2 | 2 | A | 0.000774 |
M | 3 | D3H | Gat | Cat | 2 | 2 | A.2.5 | 0.000998 |
M | 3 | D3X | GaT | TaA | 1 | 2 | All | 0 |
M | 3 | D3X | GaT | TaG | 1 | 2 | All | 0 |
M | 3 | D3Y | Gat | Tat | 2 | 2 | AY.10 | 0.00106 |
M | 3 | D3V | gAt | gTt | 2 | 2 | AY.117 | 0.000169 |
M | 3 | D3Y | Gat | Tat | 2 | 2 | AY.119 | 0.000071 |
M | 3 | D3H | Gat | Cat | 2 | 2 | AY.119 | 0.000071 |
M | 3 | D3H | Gat | Cat | 2 | 2 | AY.120 | 0.000074 |
M | 3 | D3D | gaT | gaC | 2 | 2 | AY.2 | 0.000712 |
M | 3 | D3D | gaT | gaC | 2 | 2 | AY.20 | 0.000078 |
M | 3 | D3H | Gat | Cat | 2 | 2 | AY.23 | 0.000139 |
M | 3 | D3N | Gat | Aat | 2 | 2 | AY.26 | 0.000057 |
M | 3 | D3G | gAt | gGt | 2 | 2 | AY.26 | 0.000057 |
M | 3 | D3D | gaT | gaC | 2 | 2 | AY.26 | 0.000057 |
M | 3 | D3D | gaT | gaC | 2 | 2 | AY.33 | 0.000134 |
M | 3 | D3G | gAt | gGt | 2 | 2 | AY.33 | 0.000134 |
M | 3 | D3N | Gat | Aat | 2 | 2 | AY.39 | 0.000049 |
M | 3 | D3H | Gat | Cat | 2 | 2 | AY.39.1 | 0.000079 |
M | 3 | D3A | gAt | gCt | 2 | 2 | AY.4.1 | 0.001475 |
M | 3 | D3V | gAt | gTt | 2 | 2 | AY.4.2 | 0.000043 |
M | 3 | D3Y | Gat | Tat | 2 | 2 | AY.4.4 | 0.000818 |
M | 3 | D3del | GAT | --- | 2 | 2 | AY.4.5 | 0.000215 |
M | 3 | D3N | Gat | Aat | 2 | 2 | AY.4.5 | 0.000215 |
M | 3 | D3G | gAt | gGt | 2 | 2 | AY.42 | 0.00008 |
M | 3 | D3del | GAT | --- | 2 | 2 | AY.43 | 0.000009 |
M | 3 | D3del | GAT | --- | 2 | 2 | AY.44 | 0.000012 |
M | 3 | D3D | gaT | gaC | 2 | 2 | AY.45 | 0.000243 |
M | 3 | D3Y | Gat | Tat | 2 | 2 | AY.46 | 0.000208 |
M | 3 | D3D | gaT | gaC | 2 | 2 | AY.46 | 0.000208 |
M | 3 | D3H | Gat | Cat | 2 | 2 | AY.46.4 | 0.000329 |
M | 3 | D3N | Gat | Aat | 2 | 2 | AY.47 | 0.000062 |
M | 3 | D3Y | Gat | Tat | 2 | 2 | AY.48 | 0.00093 |
M | 3 | D3E | gaT | gaG | 2 | 2 | AY.5 | 0.000041 |
M | 3 | D3N | Gat | Aat | 2 | 2 | AY.5.4 | 0.000553 |
M | 3 | D3Y | Gat | Tat | 2 | 2 | AY.66 | 0.002139 |
M | 3 | D3Y | Gat | Tat | 2 | 2 | AY.68 | 0.000547 |
M | 3 | D3Y | Gat | Tat | 2 | 2 | AY.7.1 | 0.000225 |
M | 3 | D3Y | Gat | Tat | 2 | 2 | AY.74 | 0.000231 |
M | 3 | D3G | gAt | gGt | 2 | 2 | AY.75 | 0.000112 |
M | 3 | D3G | gAt | gGt | 2 | 2 | AY.8 | 0.001212 |
M | 3 | D3Y | Gat | Tat | 2 | 2 | AY.9 | 0.000135 |
M | 3 | D3Y | Gat | Tat | 2 | 2 | AY.9.1 | 0.000167 |
M | 3 | D3G | gAt | gGt | 2 | 2 | B.1.1.10 | 0.00223 |
M | 3 | D3D | gaT | gaC | 2 | 2 | B.1.1.306 | 0.000877 |
M | 3 | D3N | Gat | Aat | 2 | 2 | B.1.1.311 | 0.000716 |
M | 3 | D3D | gaT | gaC | 2 | 2 | B.1.1.348 | 0.001592 |
M | 3 | D3G | gAt | gGt | 2 | 2 | B.1.1.466 | 0.017391 |
M | 3 | D3E | gaT | gaA | 2 | 2 | B.1.1.519 | 0.000079 |
M | 3 | D3G | gAt | gGt | 2 | 2 | B.1.160.14 | 0.004237 |
M | 3 | D3A | gAt | gCt | 2 | 2 | B.1.177 | 0.000026 |
M | 3 | D3G | gAt | gGt | 2 | 2 | B.1.177.73 | 0.001133 |
M | 3 | D3A | gAt | gCt | 2 | 2 | B.1.210 | 0.004264 |
M | 3 | D3Y | Gat | Tat | 2 | 2 | B.1.221 | 0.000142 |
M | 3 | D3Y | Gat | Tat | 2 | 2 | B.1.240 | 0.000431 |
M | 3 | D3N | Gat | Aat | 2 | 2 | B.1.241 | 0.001623 |
M | 3 | D3D | gaT | gaC | 2 | 2 | B.1.349 | 0.00143 |
M | 3 | D3G | gAt | gGt | 2 | 2 | B.1.351 | 0.000059 |
M | 3 | D3G | gAt | gGt | 2 | 2 | B.1.36.18 | 0.00084 |
M | 3 | D3H | Gat | Cat | 2 | 2 | B.1.36.38 | 0.003284 |
M | 3 | D3G | gAt | gGt | 2 | 2 | B.1.391 | 0.002255 |
M | 3 | D3H | Gat | Cat | 2 | 2 | B.1.427 | 0.000101 |
M | 3 | D3Y | Gat | Tat | 2 | 2 | B.1.526 | 0.000047 |
M | 3 | D3D | gaT | gaC | 2 | 2 | B.1.595 | 0.000522 |
M | 3 | D3Y | Gat | Tat | 2 | 2 | B.1.596 | 0.000174 |
M | 3 | D3Y | Gat | Tat | 2 | 2 | B.1.597 | 0.009259 |
M | 3 | D3N | Gat | Aat | 2 | 2 | B.1.617.1 | 0.000258 |
M | 3 | D3Y | Gat | Tat | 2 | 2 | B.1.617.1 | 0.000258 |
M | 3 | D3D | gaT | gaC | 2 | 2 | B.1.621 | 0.000177 |
M | 3 | D3Y | Gat | Tat | 2 | 2 | B.1.621.1 | 0.001012 |
M | 3 | D3D | gaT | gaC | 2 | 2 | B.1.637 | 0.000146 |
M | 3 | D3H | Gat | Cat | 2 | 2 | B.1.637 | 0.000146 |
M | 3 | D3Y | Gat | Tat | 2 | 2 | B.40 | 0.000729 |
M | 3 | D3H | Gat | Cat | 2 | 2 | C.14 | 0.008658 |
M | 3 | D3del | GAT | --- | 2 | 2 | P.1 | 0.000032 |
M | 3 | D3H | Gat | Cat | 2 | 2 | P.1.12 | 0.000968 |
M | 3 | D3Y | Gat | Tat | 2 | 2 | P.1.14 | 0.000096 |
M | 3 | D3Y | Gat | Tat | 2 | 2 | P.2 | 0.000373 |
M | 3 | D3Y | Gat | Tat | 2 | 2 | P.3 | 0.00319 |
M | 3 | D3Y | Gat | Tat | 2 | 2 | Q.8 | 0.00033 |
M | 3 | D3H | Gat | Cat | 2 | 2 | R.1 | 0.00018 |
M | 3 | D3N | Gat | Aat | 1 | 1 | 0.055556 | |
M | 3 | D3G | gAt | gGt | 1 | 1 | A | 0.000387 |
M | 3 | D3G | gAt | gGt | 1 | 1 | A.1 | 0.000282 |
M | 3 | D3Y | Gat | Tat | 1 | 1 | A.2.2 | 0.001689 |
M | 3 | D3D | gaT | gaC | 1 | 1 | AD.2 | 0.000219 |
M | 3 | D3I | GAt | ATt | 1 | 1 | All | 0 |
M | 3 | D3K | GaT | AaG | 1 | 1 | All | 0 |
M | 3 | D3del | GAT | --- | 1 | 1 | AY.100 | 0.000046 |
M | 3 | D3G | gAt | gGt | 1 | 1 | AY.100 | 0.000046 |
M | 3 | D3Y | Gat | Tat | 1 | 1 | AY.100 | 0.000046 |
M | 3 | D3Y | Gat | Tat | 1 | 1 | AY.101 | 0.00049 |
M | 3 | D3N | Gat | Aat | 1 | 1 | AY.102 | 0.000027 |
M | 3 | D3E | gaT | gaA | 1 | 1 | AY.103 | 0.000006 |
M | 3 | D3Y | Gat | Tat | 1 | 1 | AY.106 | 0.000335 |
M | 3 | D3G | gAt | gGt | 1 | 1 | AY.107 | 0.000466 |
M | 3 | D3V | gAt | gTt | 1 | 1 | AY.108 | 0.001103 |
M | 3 | D3Y | Gat | Tat | 1 | 1 | AY.108 | 0.001103 |
M | 3 | D3del | GAT | --- | 1 | 1 | AY.108 | 0.001103 |
M | 3 | D3H | Gat | Cat | 1 | 1 | AY.110 | 0.000113 |
M | 3 | D3Y | Gat | Tat | 1 | 1 | AY.110 | 0.000113 |
M | 3 | D3V | gAt | gTt | 1 | 1 | AY.110 | 0.000113 |
M | 3 | D3D | gaT | gaC | 1 | 1 | AY.111 | 0.000183 |
M | 3 | D3G | gAt | gGt | 1 | 1 | AY.113 | 0.000142 |
M | 3 | D3Y | Gat | Tat | 1 | 1 | AY.116.1 | 0.000311 |
M | 3 | D3Y | Gat | Tat | 1 | 1 | AY.117 | 0.000085 |
M | 3 | D3del | GAT | --- | 1 | 1 | AY.118 | 0.000063 |
M | 3 | D3G | gAt | gGt | 1 | 1 | AY.119 | 0.000035 |
M | 3 | D3del | GAT | --- | 1 | 1 | AY.120 | 0.000037 |
M | 3 | D3V | gAt | gTt | 1 | 1 | AY.120 | 0.000037 |
M | 3 | D3N | Gat | Aat | 1 | 1 | AY.120.1 | 0.000321 |
M | 3 | D3N | Gat | Aat | 1 | 1 | AY.121 | 0.000135 |
M | 3 | D3D | gaT | gaC | 1 | 1 | AY.13 | 0.000161 |
M | 3 | D3D | gaT | gaC | 1 | 1 | AY.16.1 | 0.00047 |
M | 3 | D3D | gaT | gaC | 1 | 1 | AY.19 | 0.00114 |
M | 3 | D3V | gAt | gTt | 1 | 1 | AY.2 | 0.000356 |
M | 3 | D3N | Gat | Aat | 1 | 1 | AY.23 | 0.00007 |
M | 3 | D3D | gaT | gaC | 1 | 1 | AY.23 | 0.00007 |
M | 3 | D3G | gAt | gGt | 1 | 1 | AY.23 | 0.00007 |
M | 3 | D3E | gaT | gaG | 1 | 1 | AY.25 | 0.000006 |
M | 3 | D3Y | Gat | Tat | 1 | 1 | AY.26 | 0.000028 |
M | 3 | D3E | gaT | gaG | 1 | 1 | AY.27 | 0.000065 |
M | 3 | D3H | Gat | Cat | 1 | 1 | AY.27 | 0.000065 |
M | 3 | D3E | gaT | gaG | 1 | 1 | AY.29 | 0.000016 |
M | 3 | D3A | gAt | gCt | 1 | 1 | AY.29.1 | 0.000221 |
M | 3 | D3A | gAt | gCt | 1 | 1 | AY.3 | 0.00001 |
M | 3 | D3Y | Gat | Tat | 1 | 1 | AY.30 | 0.000396 |
M | 3 | D3H | Gat | Cat | 1 | 1 | AY.32 | 0.000532 |
M | 3 | D3H | Gat | Cat | 1 | 1 | AY.33 | 0.000067 |
M | 3 | D3Y | Gat | Tat | 1 | 1 | AY.36 | 0.000148 |
M | 3 | D3G | gAt | gGt | 1 | 1 | AY.37 | 0.000316 |
M | 3 | D3N | Gat | Aat | 1 | 1 | AY.39.1 | 0.00004 |
M | 3 | D3H | Gat | Cat | 1 | 1 | AY.4.2 | 0.000022 |
M | 3 | D3D | gaT | gaC | 1 | 1 | AY.4.2.1 | 0.000149 |
M | 3 | D3G | gAt | gGt | 1 | 1 | AY.4.2.1 | 0.000149 |
M | 3 | D3H | Gat | Cat | 1 | 1 | AY.4.5 | 0.000107 |
M | 3 | D3Y | Gat | Tat | 1 | 1 | AY.41 | 0.000294 |
M | 3 | D3E | gaT | gaA | 1 | 1 | AY.44 | 0.000006 |
M | 3 | D3A | gAt | gCt | 1 | 1 | AY.44 | 0.000006 |
M | 3 | D3G | gAt | gGt | 1 | 1 | AY.45 | 0.000122 |
M | 3 | D3A | gAt | gCt | 1 | 1 | AY.47 | 0.000031 |
M | 3 | D3G | gAt | gGt | 1 | 1 | AY.49 | 0.003195 |
M | 3 | D3Y | Gat | Tat | 1 | 1 | AY.5.3 | 0.000337 |
M | 3 | D3Y | Gat | Tat | 1 | 1 | AY.50 | 0.000799 |
M | 3 | D3G | gAt | gGt | 1 | 1 | AY.51 | 0.000909 |
M | 3 | D3Y | Gat | Tat | 1 | 1 | AY.52 | 0.000814 |
M | 3 | D3H | Gat | Cat | 1 | 1 | AY.54 | 0.000095 |
M | 3 | D3Y | Gat | Tat | 1 | 1 | AY.54 | 0.000095 |
M | 3 | D3H | Gat | Cat | 1 | 1 | AY.56 | 0.001605 |
M | 3 | D3Y | Gat | Tat | 1 | 1 | AY.6 | 0.000041 |
M | 3 | D3D | gaT | gaC | 1 | 1 | AY.6 | 0.000041 |
M | 3 | D3V | gAt | gTt | 1 | 1 | AY.62 | 0.000436 |
M | 3 | D3E | gaT | gaG | 1 | 1 | AY.68 | 0.000274 |
M | 3 | D3H | Gat | Cat | 1 | 1 | AY.68 | 0.000274 |
M | 3 | D3del | GAT | --- | 1 | 1 | AY.68 | 0.000274 |
M | 3 | D3H | Gat | Cat | 1 | 1 | AY.69 | 0.000187 |
M | 3 | D3E | gaT | gaG | 1 | 1 | AY.7.1 | 0.000113 |
M | 3 | D3G | gAt | gGt | 1 | 1 | AY.7.2 | 0.000559 |
M | 3 | D3Y | Gat | Tat | 1 | 1 | AY.70 | 0.000209 |
M | 3 | D3G | gAt | gGt | 1 | 1 | AY.71 | 0.000475 |
M | 3 | D3G | gAt | gGt | 1 | 1 | AY.74 | 0.000116 |
M | 3 | D3H | Gat | Cat | 1 | 1 | AY.75 | 0.000056 |
M | 3 | D3Y | Gat | Tat | 1 | 1 | AY.75.1 | 0.00018 |
M | 3 | D3H | Gat | Cat | 1 | 1 | AY.87 | 0.000833 |
M | 3 | D3del | GAT | --- | 1 | 1 | AY.9 | 0.000068 |
M | 3 | D3G | gAt | gGt | 1 | 1 | AY.9 | 0.000068 |
M | 3 | D3D | gaT | gaC | 1 | 1 | AY.9.1 | 0.000084 |
M | 3 | D3Y | Gat | Tat | 1 | 1 | AY.92 | 0.000287 |
M | 3 | D3Y | Gat | Tat | 1 | 1 | AY.95 | 0.000761 |
M | 3 | D3Y | Gat | Tat | 1 | 1 | AY.96 | 0.002075 |
M | 3 | D3Y | Gat | Tat | 1 | 1 | AY.98 | 0.000079 |
M | 3 | D3D | gaT | gaC | 1 | 1 | B | 0.000128 |
M | 3 | D3N | Gat | Aat | 1 | 1 | B | 0.000128 |
M | 3 | D3del1 | gAt | g-t | 1 | 1 | B.1 | 0.000009 |
M | 3 | D3I | GAt | ATt | 1 | 1 | B.1 | 0.000009 |
M | 3 | D3A | gAt | gCt | 1 | 1 | B.1 | 0.000009 |
M | 3 | D3E | gaT | gaG | 1 | 1 | B.1.1 | 0.000018 |
M | 3 | D3V | gAt | gTt | 1 | 1 | B.1.1.1 | 0.000327 |
M | 3 | D3A | gAt | gCt | 1 | 1 | B.1.1.10 | 0.001115 |
M | 3 | D3N | Gat | Aat | 1 | 1 | B.1.1.118 | 0.010204 |
M | 3 | D3del | GAT | --- | 1 | 1 | B.1.1.139 | 0.022727 |
M | 3 | D3K | GaT | AaG | 1 | 1 | B.1.1.153 | 0.001095 |
M | 3 | D3D | gaT | gaC | 1 | 1 | B.1.1.210 | 0.005714 |
M | 3 | D3G | gAt | gGt | 1 | 1 | B.1.1.214 | 0.000055 |
M | 3 | D3Y | Gat | Tat | 1 | 1 | B.1.1.214 | 0.000055 |
M | 3 | D3D | gaT | gaC | 1 | 1 | B.1.1.216 | 0.00089 |
M | 3 | D3H | Gat | Cat | 1 | 1 | B.1.1.220 | 0.001859 |
M | 3 | D3G | gAt | gGt | 1 | 1 | B.1.1.222 | 0.000204 |
M | 3 | D3D | gaT | gaC | 1 | 1 | B.1.1.25 | 0.000569 |
M | 3 | D3G | gAt | gGt | 1 | 1 | B.1.1.25 | 0.000569 |
M | 3 | D3H | Gat | Cat | 1 | 1 | B.1.1.28 | 0.000311 |
M | 3 | D3del | GAT | --- | 1 | 1 | B.1.1.288 | 0.001916 |
M | 3 | D3G | gAt | gGt | 1 | 1 | B.1.1.301 | 0.001179 |
M | 3 | D3G | gAt | gGt | 1 | 1 | B.1.1.306 | 0.000438 |
M | 3 | D3G | gAt | gGt | 1 | 1 | B.1.1.318 | 0.000302 |
M | 3 | D3N | Gat | Aat | 1 | 1 | B.1.1.33 | 0.000421 |
M | 3 | D3Y | Gat | Tat | 1 | 1 | B.1.1.33 | 0.000421 |
M | 3 | D3A | gAt | gCt | 1 | 1 | B.1.1.369 | 0.000446 |
M | 3 | D3G | gAt | gGt | 1 | 1 | B.1.1.371 | 0.010417 |
M | 3 | D3G | gAt | gGt | 1 | 1 | B.1.1.372 | 0.000689 |
M | 3 | D3Y | Gat | Tat | 1 | 1 | B.1.1.39 | 0.00051 |
M | 3 | D3Y | Gat | Tat | 1 | 1 | B.1.1.519 | 0.00004 |
M | 3 | D3N | Gat | Aat | 1 | 1 | B.1.1.519 | 0.00004 |
M | 3 | D3G | gAt | gGt | 1 | 1 | B.1.1.519 | 0.00004 |
M | 3 | D3D | gaT | gaC | 1 | 1 | B.1.1.519 | 0.00004 |
M | 3 | D3Y | Gat | Tat | 1 | 1 | B.1.1.523 | 0.001563 |
M | 3 | D3Y | Gat | Tat | 1 | 1 | B.1.1.83 | 0.00271 |
M | 3 | D3G | gAt | gGt | 1 | 1 | B.1.126 | 0.001276 |
M | 3 | D3Y | Gat | Tat | 1 | 1 | B.1.13 | 0.002375 |
M | 3 | D3D | gaT | gaC | 1 | 1 | B.1.13 | 0.002375 |
M | 3 | D3Y | Gat | Tat | 1 | 1 | B.1.147 | 0.000756 |
M | 3 | D3G | gAt | gGt | 1 | 1 | B.1.157 | 0.002985 |
M | 3 | D3H | Gat | Cat | 1 | 1 | B.1.160 | 0.000031 |
M | 3 | D3A | gAt | gCt | 1 | 1 | B.1.160 | 0.000031 |
M | 3 | D3V | gAt | gTt | 1 | 1 | B.1.177 | 0.000013 |
M | 3 | D3E | gaT | gaG | 1 | 1 | B.1.177 | 0.000013 |
M | 3 | D3del | GAT | --- | 1 | 1 | B.1.177 | 0.000013 |
M | 3 | D3N | Gat | Aat | 1 | 1 | B.1.177.12 | 0.000152 |
M | 3 | D3H | Gat | Cat | 1 | 1 | B.1.177.12 | 0.000152 |
M | 3 | D3del | GAT | --- | 1 | 1 | B.1.177.16 | 0.000664 |
M | 3 | D3del | GAT | --- | 1 | 1 | B.1.177.17 | 0.000821 |
M | 3 | D3G | gAt | gGt | 1 | 1 | B.1.177.33 | 0.001645 |
M | 3 | D3D | gaT | gaC | 1 | 1 | B.1.177.4 | 0.000211 |
M | 3 | D3D | gaT | gaC | 1 | 1 | B.1.177.58 | 0.001332 |
M | 3 | D3H | Gat | Cat | 1 | 1 | B.1.177.59 | 0.016129 |
M | 3 | D3N | Gat | Aat | 1 | 1 | B.1.177.60 | 0.000218 |
M | 3 | D3A | gAt | gCt | 1 | 1 | B.1.177.7 | 0.000165 |
M | 3 | D3N | Gat | Aat | 1 | 1 | B.1.177.73 | 0.000566 |
M | 3 | D3N | Gat | Aat | 1 | 1 | B.1.177.8 | 0.000752 |
M | 3 | D3H | Gat | Cat | 1 | 1 | B.1.177.8 | 0.000752 |
M | 3 | D3H | Gat | Cat | 1 | 1 | B.1.177.80 | 0.001912 |
M | 3 | D3D | gaT | gaC | 1 | 1 | B.1.177.86 | 0.000183 |
M | 3 | D3del | GAT | --- | 1 | 1 | B.1.177.87 | 0.000728 |
M | 3 | D3del1 | Gat | -at | 1 | 1 | B.1.2 | 0.000009 |
M | 3 | D3Y | Gat | Tat | 1 | 1 | B.1.234 | 0.000132 |
M | 3 | D3G | gAt | gGt | 1 | 1 | B.1.240 | 0.000216 |
M | 3 | D3N | Gat | Aat | 1 | 1 | B.1.240 | 0.000216 |
M | 3 | D3H | Gat | Cat | 1 | 1 | B.1.240 | 0.000216 |
M | 3 | D3H | Gat | Cat | 1 | 1 | B.1.243 | 0.00007 |
M | 3 | D3H | Gat | Cat | 1 | 1 | B.1.258 | 0.000067 |
M | 3 | D3G | gAt | gGt | 1 | 1 | B.1.279 | 0.000514 |
M | 3 | D3Y | Gat | Tat | 1 | 1 | B.1.279 | 0.000514 |
M | 3 | D3G | gAt | gGt | 1 | 1 | B.1.298 | 0.002114 |
M | 3 | D3G | gAt | gGt | 1 | 1 | B.1.311 | 0.000275 |
M | 3 | D3Y | Gat | Tat | 1 | 1 | B.1.311 | 0.000275 |
M | 3 | D3Y | Gat | Tat | 1 | 1 | B.1.320 | 0.001245 |
M | 3 | D3V | gAt | gTt | 1 | 1 | B.1.337 | 0.005587 |
M | 3 | D3G | gAt | gGt | 1 | 1 | B.1.35 | 0.008475 |
M | 3 | D3G | gAt | gGt | 1 | 1 | B.1.36.16 | 0.001425 |
M | 3 | D3H | Gat | Cat | 1 | 1 | B.1.36.18 | 0.00042 |
M | 3 | D3V | gAt | gTt | 1 | 1 | B.1.36.29 | 0.000517 |
M | 3 | D3Y | Gat | Tat | 1 | 1 | B.1.36.36 | 0.000602 |
M | 3 | D3V | gAt | gTt | 1 | 1 | B.1.36.36 | 0.000602 |
M | 3 | D3H | Gat | Cat | 1 | 1 | B.1.369 | 0.000285 |
M | 3 | D3Y | Gat | Tat | 1 | 1 | B.1.375 | 0.00082 |
M | 3 | D3del1 | Gat | -at | 1 | 1 | B.1.377 | 0.004566 |
M | 3 | D3G | gAt | gGt | 1 | 1 | B.1.393 | 0.028571 |
M | 3 | D3G | gAt | gGt | 1 | 1 | B.1.398 | 0.002976 |
M | 3 | D3Y | Gat | Tat | 1 | 1 | B.1.400 | 0.000429 |
M | 3 | D3V | gAt | gTt | 1 | 1 | B.1.427 | 0.00005 |
M | 3 | D3Y | Gat | Tat | 1 | 1 | B.1.427 | 0.00005 |
M | 3 | D3D | gaT | gaC | 1 | 1 | B.1.429 | 0.000024 |
M | 3 | D3G | gAt | gGt | 1 | 1 | B.1.429 | 0.000024 |
M | 3 | D3G | gAt | gGt | 1 | 1 | B.1.459 | 0.004082 |
M | 3 | D3H | Gat | Cat | 1 | 1 | B.1.466.2 | 0.000391 |
M | 3 | D3H | Gat | Cat | 1 | 1 | B.1.470 | 0.001404 |
M | 3 | D3A | gAt | gCt | 1 | 1 | B.1.517 | 0.000427 |
M | 3 | D3G | gAt | gGt | 1 | 1 | B.1.517 | 0.000427 |
M | 3 | D3E | gaT | gaG | 1 | 1 | B.1.526 | 0.000024 |
M | 3 | D3del | GAT | --- | 1 | 1 | B.1.561 | 0.000397 |
M | 3 | D3G | gAt | gGt | 1 | 1 | B.1.565 | 0.00081 |
M | 3 | D3E | gaT | gaG | 1 | 1 | B.1.568 | 0.001111 |
M | 3 | D3Y | Gat | Tat | 1 | 1 | B.1.575 | 0.000303 |
M | 3 | D3Y | Gat | Tat | 1 | 1 | B.1.576 | 0.000907 |
M | 3 | D3G | gAt | gGt | 1 | 1 | B.1.595 | 0.000261 |
M | 3 | D3G | gAt | gGt | 1 | 1 | B.1.599 | 0.00365 |
M | 3 | D3G | gAt | gGt | 1 | 1 | B.1.601 | 0.030303 |
M | 3 | D3E | gaT | gaG | 1 | 1 | B.1.617.2 | 0.000004 |
M | 3 | D3A | gAt | gCt | 1 | 1 | B.1.617.2 | 0.000004 |
M | 3 | D3del | GAT | --- | 1 | 1 | B.1.617.2 | 0.000004 |
M | 3 | D3G | gAt | gGt | 1 | 1 | B.1.619.1 | 0.000641 |
M | 3 | D3E | gaT | gaG | 1 | 1 | B.1.621 | 0.000089 |
M | 3 | D3Y | Gat | Tat | 1 | 1 | B.1.621 | 0.000089 |
M | 3 | D3G | gAt | gGt | 1 | 1 | B.1.621 | 0.000089 |
M | 3 | D3Y | Gat | Tat | 1 | 1 | B.1.623 | 0.000536 |
M | 3 | D3D | gaT | gaC | 1 | 1 | B.1.628 | 0.000352 |
M | 3 | D3Y | Gat | Tat | 1 | 1 | B.1.637 | 0.000073 |
M | 3 | D3H | Gat | Cat | 1 | 1 | B.23 | 0.002924 |
M | 3 | D3G | gAt | gGt | 1 | 1 | B.35 | 0.007812 |
M | 3 | D3A | gAt | gCt | 1 | 1 | B.4 | 0.002208 |
M | 3 | D3A | gAt | gCt | 1 | 1 | B.6.2 | 0.0625 |
M | 3 | D3Y | Gat | Tat | 1 | 1 | C.18 | 0.002591 |
M | 3 | D3N | Gat | Aat | 1 | 1 | C.36.3 | 0.000567 |
M | 3 | D3G | gAt | gGt | 1 | 1 | C.36.3 | 0.000567 |
M | 3 | D3H | Gat | Cat | 1 | 1 | C.37 | 0.000116 |
M | 3 | D3V | gAt | gTt | 1 | 1 | C.37.1 | 0.002618 |
M | 3 | D3Y | Gat | Tat | 1 | 1 | D.2 | 0.000075 |
M | 3 | D3V | gAt | gTt | 1 | 1 | D.2 | 0.000075 |
M | 3 | D3N | Gat | Aat | 1 | 1 | P.1 | 0.000016 |
M | 3 | D3del1 | Gat | -at | 1 | 1 | P.1 | 0.000016 |
M | 3 | D3H | Gat | Cat | 1 | 1 | P.1 | 0.000016 |
M | 3 | D3Y | Gat | Tat | 1 | 1 | P.1.10 | 0.000269 |
M | 3 | D3D | gaT | gaC | 1 | 1 | P.1.14 | 0.000048 |
M | 3 | D3H | Gat | Cat | 1 | 1 | P.1.14 | 0.000048 |
M | 3 | D3del | GAT | --- | 1 | 1 | P.1.15 | 0.000232 |
M | 3 | D3D | gaT | gaC | 1 | 1 | P.1.17 | 0.000162 |
M | 3 | D3H | Gat | Cat | 1 | 1 | P.1.7 | 0.000319 |
M | 3 | D3D | gaT | gaC | 1 | 1 | P.2 | 0.000187 |
M | 3 | D3V | gAt | gTt | 1 | 1 | P.2 | 0.000187 |
M | 3 | D3Y | Gat | Tat | 1 | 1 | Q.1 | 0.000126 |
M | 3 | D3V | gAt | gTt | 1 | 1 | Q.8 | 0.000165 |
M | 3 | D3G | gAt | gGt | 1 | 1 | Q.8 | 0.000165 |
M | 3 | D3H | Gat | Cat | 1 | 1 | Q.8 | 0.000165 |
M | 3 | D3Y | Gat | Tat | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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