CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = M : CodonNum = 29 & Codon = Ttt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
M29L29FnonsynCttTtt55965596126607-26609

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
M29L29FCttTtt55965596All0.00107
M29L29FCttTtt16481648AY.10.652157
M29L29FCttTtt655655B.1.1.70.000586
M29L29FCttTtt382382AY.930.104315
M29L29FCttTtt310310AY.1030.001925
M29L29FCttTtt275275AY.40.000428
M29L29FCttTtt264264B.1.617.20.000994
M29L29FCttTtt153153C.1.20.651064
M29L29FCttTtt128128B.1.6320.85906
M29L29FCttTtt106106AY.1200.003941
M29L29FCttTtt100100B.1.20.000881
M29L29FCttTtt7272AY.690.01344
M29L29FCttTtt6868AY.440.000414
M29L29FCttTtt6666AY.430.000292
M29L29FCttTtt6161AY.250.000367
M29L29FCttTtt5353P.1.140.002533
M29L29FCttTtt5252AY.330.003472
M29L29FCttTtt5252P.10.000819
M29L29FCttTtt4242B.1.10.000762
M29L29FCttTtt4141AY.30.000408
M29L29FCttTtt4141B.1.1.630.015818
M29L29FCttTtt3838AY.390.000939
M29L29FCttTtt3737B.10.000339
M29L29FCttTtt3636AY.1170.003043
M29L29FCttTtt3535AY.480.016279
M29L29FCttTtt2626AY.9.20.000955
M29L29FCttTtt2525AY.200.000972
M29L29FCttTtt2424AY.290.000379
M29L29FCttTtt2323B.1.3510.000684
M29L29FCttTtt2222AY.1100.002479
M29L29FCttTtt2222B.1.214.20.013189
M29L29FCttTtt2222C.36.3.10.059783
M29L29FCttTtt2121AY.470.000653
M29L29FCttTtt2121AY.50.000434
M29L29FCttTtt1919AY.140.001672
M29L29FCttTtt1717B.1.1600.00053
M29L29FCttTtt1616AY.1020.000424
M29L29FCttTtt1616AY.540.001526
M29L29FCttTtt1616B.1.1.4290.073733
M29L29FCttTtt1616B.1.2430.001113
M29L29FCttTtt1616B.6.21
M29L29FCttTtt1616Q.20.009816
M29L29FCttTtt1515B.1.1770.000198
M29L29FCttTtt1515B.1.360.002189
M29L29FCttTtt1414AY.39.20.021572
M29L29FCttTtt1414B.1.1.2910.010393
M29L29FCttTtt1313AY.420.000523
M29L29FCttTtt1111A0.004257
M29L29FCttTtt1111AY.1180.000689
M29L29FCttTtt1111AY.460.001145
M29L29FCttTtt1111B.1.1.3040.030899
M29L29FCttTtt1010AY.1070.00466
M29L29FCttTtt1010AY.750.00056
M29L29FCttTtt1010B.1.1.500.006789
M29L29FCttTtt1010B.1.160.320.042918
M29L29FCttTtt99AY.4.20.000195
M29L29FCttTtt99AY.450.001095
M29L29FCttTtt99AY.9.10.000754
M29L29FCttTtt99B.1.5400.087379
M29L29FCttTtt88AY.1210.001083
M29L29FCttTtt88B.1.1.2070.009456
M29L29FCttTtt88B.1.1.3060.003507
M29L29FCttTtt88B.1.1.5190.000318
M29L29FCttTtt88P.20.001493
M29L29FCttTtt77AY.1000.000322
M29L29FCttTtt77AY.740.00081
M29L29FCttTtt66AY.1190.000212
M29L29FCttTtt66AY.640.003571
M29L29FCttTtt66AY.7.10.000676
M29L29FCttTtt66B.1.1.2140.000333
M29L29FCttTtt66B.1.2210.000426
M29L29FCttTtt66B.1.4290.000141
M29L29FCttTtt66B.1.5260.000141
M29L29FCttTtt55AY.260.000142
M29L29FCttTtt55B.1.1.4160.004525
M29L29FCttTtt55B.1.36.80.005
M29L29FCttTtt55B.1.4270.000252
M29L29FCttTtt55C.370.00058
M29L29FCttTtt55P.1.150.001162
M29L29FCttTtt55Q.80.000825
M29L29FCttTtt44AY.1060.00134
M29L29FCttTtt44AY.230.000279
M29L29FCttTtt44AY.350.000932
M29L29FCttTtt44AY.4.50.00043
M29L29FCttTtt44AY.60.000165
M29L29FCttTtt44AY.620.001743
M29L29FCttTtt44B.1.2340.000528
M29L29FCttTtt44B.1.2580.000266
M29L29FCttTtt44B.1.3980.011905
M29L29FCttTtt44B.1.5250.000453
M29L29FCttTtt44P.1.70.001277
M29L29FCttTtt33AY.100.00159
M29L29FCttTtt33AY.1050.001929
M29L29FCttTtt33AY.116.10.000934
M29L29FCttTtt33AY.120.10.000963
M29L29FCttTtt33AY.130.000483
M29L29FCttTtt33AY.160.001139
M29L29FCttTtt33AY.46.40.000494
M29L29FCttTtt33AY.980.000237
M29L29FCttTtt33B.1.1.2190.015
M29L29FCttTtt33B.1.1.2940.003797
M29L29FCttTtt33B.1.1.370.000579
M29L29FCttTtt33B.1.5950.000783
M29L29FCttTtt33L.30.010638
M29L29FCttTtt22A.20.001324
M29L29FCttTtt22A.2.50.000998
M29L29FCttTtt22AY.1040.003968
M29L29FCttTtt22AY.190.002281
M29L29FCttTtt22AY.39.10.000079
M29L29FCttTtt22AY.46.60.000144
M29L29FCttTtt22AY.840.000875
M29L29FCttTtt22AY.90.000135
M29L29FCttTtt22AY.950.001522
M29L29FCttTtt22AY.98.10.000097
M29L29FCttTtt22B0.000256
M29L29FCttTtt22B.1.1.280.000622
M29L29FCttTtt22B.1.1.3170.000823
M29L29FCttTtt22B.1.1.4120.015267
M29L29FCttTtt22B.1.1.4340.000697
M29L29FCttTtt22B.1.177.50.002484
M29L29FCttTtt22B.1.177.730.001133
M29L29FCttTtt22B.1.2370.00995
M29L29FCttTtt22B.1.258.170.000208
M29L29FCttTtt22B.1.36.290.001035
M29L29FCttTtt22B.1.36.90.006431
M29L29FCttTtt22B.1.3610.002577
M29L29FCttTtt22B.1.617.10.000258
M29L29FCttTtt22B.1.6230.001073
M29L29FCttTtt22B.1.6370.000146
M29L29FCttTtt22B.400.000729
M29L29FCttTtt22D.20.00015
M29L29FCttTtt11A.290.005319
M29L29FCttTtt11AD.20.000219
M29L29FCttTtt11AE.10.011364
M29L29FCttTtt11AT.10.005128
M29L29FCttTtt11AY.1080.001103
M29L29FCttTtt11AY.1110.000183
M29L29FCttTtt11AY.1130.000142
M29L29FCttTtt11AY.1140.000231
M29L29FCttTtt11AY.1160.000287
M29L29FCttTtt11AY.120.000316
M29L29FCttTtt11AY.120.20.001285
M29L29FCttTtt11AY.16.10.00047
M29L29FCttTtt11AY.210.001898
M29L29FCttTtt11AY.220.002092
M29L29FCttTtt11AY.240.000431
M29L29FCttTtt11AY.3.10.000085
M29L29FCttTtt11AY.340.000097
M29L29FCttTtt11AY.360.000148
M29L29FCttTtt11AY.4.2.10.000149
M29L29FCttTtt11AY.400.000964
M29L29FCttTtt11AY.46.50.000198
M29L29FCttTtt11AY.5.30.000337
M29L29FCttTtt11AY.5.40.000277
M29L29FCttTtt11AY.500.000799
M29L29FCttTtt11AY.530.000288
M29L29FCttTtt11AY.560.001605
M29L29FCttTtt11AY.590.00053
M29L29FCttTtt11AY.670.000464
M29L29FCttTtt11AY.680.000274
M29L29FCttTtt11AY.70.000196
M29L29FCttTtt11AY.700.000209
M29L29FCttTtt11AY.710.000475
M29L29FCttTtt11AY.730.000665
M29L29FCttTtt11AY.75.10.00018
M29L29FCttTtt11AY.760.004831
M29L29FCttTtt11AY.780.001541
M29L29FCttTtt11AY.790.001211
M29L29FCttTtt11AY.820.001357
M29L29FCttTtt11AY.830.001724
M29L29FCttTtt11AY.850.000427
M29L29FCttTtt11AY.860.00083
M29L29FCttTtt11AY.870.000833
M29L29FCttTtt11AY.910.00073
M29L29FCttTtt11AY.920.000287
M29L29FCttTtt11AY.99.20.000092
M29L29FCttTtt11B.1.1.1170.009709
M29L29FCttTtt11B.1.1.1380.006061
M29L29FCttTtt11B.1.1.2220.000204
M29L29FCttTtt11B.1.1.2430.004082
M29L29FCttTtt11B.1.1.2840.000107
M29L29FCttTtt11B.1.1.3110.000358
M29L29FCttTtt11B.1.1.3480.000796
M29L29FCttTtt11B.1.110.30.000718
M29L29FCttTtt11B.1.1570.002985
M29L29FCttTtt11B.1.160.170.001701
M29L29FCttTtt11B.1.177.570.000281
M29L29FCttTtt11B.1.177.70.000165
M29L29FCttTtt11B.1.177.850.005435
M29L29FCttTtt11B.1.2140.003663
M29L29FCttTtt11B.1.2360.002053
M29L29FCttTtt11B.1.2410.000812
M29L29FCttTtt11B.1.258.140.00098
M29L29FCttTtt11B.1.3110.000275
M29L29FCttTtt11B.1.3360.002439
M29L29FCttTtt11B.1.351.50.0006
M29L29FCttTtt11B.1.36.170.000494
M29L29FCttTtt11B.1.36.240.006173
M29L29FCttTtt11B.1.36.390.002217
M29L29FCttTtt11B.1.4030.003268
M29L29FCttTtt11B.1.4670.04
M29L29FCttTtt11B.1.4700.001404
M29L29FCttTtt11B.1.5410.004425
M29L29FCttTtt11B.1.5640.000426
M29L29FCttTtt11B.1.5700.002941
M29L29FCttTtt11B.1.5750.000303
M29L29FCttTtt11B.1.5760.000907
M29L29FCttTtt11B.1.5960.000087
M29L29FCttTtt11B.1.6210.000089
M29L29FCttTtt11B.1.6280.000352
M29L29FCttTtt11B.120.00641
M29L29FCttTtt11C.140.004329
M29L29FCttTtt11P.1.120.000484
M29L29FCttTtt11Q.40.000455
M29L29FCttTtt11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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