CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = M : CodonNum = 29

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
M29L29FnonsynCttTtt55965596126607-26609
M29L29LsynctTctC267126640.99737926607-26609
M29L29LsynctTctA267160.0022463526607-26609
M29L29LsynctTctG267110.00037439226607-26609
M29L29PnonsyncTtcCt52490.94230826607-26609
M29L29PnonsyncTTcCC5230.057692326607-26609
M29L29InonsynCttAtt4141126607-26609
M29L29deldelCTT---2828126607-26609
M29L29VnonsynCttGtt12110.91666726607-26609
M29L29VnonsynCtTGtC1210.083333326607-26609
M29L29HnonsyncTtcAt11100.90909126607-26609
M29L29HnonsyncTTcAC1110.090909126607-26609
M29L29RnonsyncTtcGt33126607-26609
M29L29del1delcTtc-t320.66666726607-26609
M29L29del1delctTct-310.33333326607-26609
M29L29del2delcTTc--22126607-26609
M29L29MnonsynCtTAtG22126607-26609
M29L29SnonsynCTtTCt11126607-26609
M29L29TnonsynCTtACt11126607-26609

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
M29L29FCttTtt55965596All0.00107
M29L29LctTctC26642671All0.00051
M29L29LctTctA62671All0.000001
M29L29LctTctG12671All0
M29L29LctTctC16491650B.1.1770.021713
M29L29LctTctA11650B.1.1770.000013
M29L29FCttTtt16481648AY.10.652157
M29L29FCttTtt655655B.1.1.70.000586
M29L29LctTctC490492AY.40.000763
M29L29LctTctA2492AY.40.000003
M29L29FCttTtt382382AY.930.104315
M29L29FCttTtt310310AY.1030.001925
M29L29FCttTtt275275AY.40.000428
M29L29FCttTtt264264B.1.617.20.000994
M29L29FCttTtt153153C.1.20.651064
M29L29LctTctC143143B.1.1.70.000128
M29L29FCttTtt128128B.1.6320.85906
M29L29FCttTtt106106AY.1200.003941
M29L29FCttTtt100100B.1.20.000881
M29L29LctTctC7878B.10.000714
M29L29FCttTtt7272AY.690.01344
M29L29FCttTtt6868AY.440.000414
M29L29FCttTtt6666AY.430.000292
M29L29FCttTtt6161AY.250.000367
M29L29FCttTtt5353P.1.140.002533
M29L29PcTtcCt4952All0.000009
M29L29PcTTcCC352All0.000001
M29L29FCttTtt5252AY.330.003472
M29L29FCttTtt5252P.10.000819
M29L29LctTctC5051B.1.617.20.000188
M29L29LctTctA151B.1.617.20.000004
M29L29FCttTtt4242B.1.10.000762
M29L29ICttAtt4141All0.000008
M29L29FCttTtt4141AY.30.000408
M29L29FCttTtt4141B.1.1.630.015818
M29L29FCttTtt3838AY.390.000939
M29L29FCttTtt3737B.10.000339
M29L29FCttTtt3636AY.1170.003043
M29L29FCttTtt3535AY.480.016279
M29L29delCTT---2828All0.000005
M29L29FCttTtt2626AY.9.20.000955
M29L29FCttTtt2525AY.200.000972
M29L29FCttTtt2424AY.290.000379
M29L29FCttTtt2323B.1.3510.000684
M29L29FCttTtt2222AY.1100.002479
M29L29FCttTtt2222B.1.214.20.013189
M29L29FCttTtt2222C.36.3.10.059783
M29L29FCttTtt2121AY.470.000653
M29L29FCttTtt2121AY.50.000434
M29L29FCttTtt1919AY.140.001672
M29L29FCttTtt1717B.1.1600.00053
M29L29FCttTtt1616AY.1020.000424
M29L29FCttTtt1616AY.540.001526
M29L29FCttTtt1616B.1.1.4290.073733
M29L29FCttTtt1616B.1.2430.001113
M29L29FCttTtt1616B.6.21
M29L29FCttTtt1616Q.20.009816
M29L29FCttTtt1515B.1.1770.000198
M29L29FCttTtt1515B.1.360.002189
M29L29FCttTtt1414AY.39.20.021572
M29L29PcTtcCt1414B.1.10.000254
M29L29FCttTtt1414B.1.1.2910.010393
M29L29FCttTtt1313AY.420.000523
M29L29VCttGtt1112All0.000002
M29L29VCtTGtC112All0
M29L29LctTctC1212AY.1030.000075
M29L29LctTctC1212AY.430.000053
M29L29FCttTtt1111A0.004257
M29L29HcTtcAt1011All0.000002
M29L29HcTTcAC111All0
M29L29FCttTtt1111AY.1180.000689
M29L29FCttTtt1111AY.460.001145
M29L29LctTctC1111B.1.10.0002
M29L29FCttTtt1111B.1.1.3040.030899
M29L29LctTctC1111B.1.1600.000343
M29L29LctTctC1111B.1.5610.004367
M29L29FCttTtt1010AY.1070.00466
M29L29FCttTtt1010AY.750.00056
M29L29FCttTtt1010B.1.1.500.006789
M29L29FCttTtt1010B.1.160.320.042918
M29L29LctTctC1010P.1.140.000478
M29L29FCttTtt99AY.4.20.000195
M29L29FCttTtt99AY.450.001095
M29L29FCttTtt99AY.9.10.000754
M29L29LctTctC99B.1.20.000079
M29L29FCttTtt99B.1.5400.087379
M29L29LctTctC99C.370.001045
M29L29FCttTtt88AY.1210.001083
M29L29FCttTtt88B.1.1.2070.009456
M29L29FCttTtt88B.1.1.3060.003507
M29L29FCttTtt88B.1.1.5190.000318
M29L29delCTT---88B.1.177.210.000612
M29L29LctTctC88B.1.177.600.001747
M29L29LctTctC88B.1.2580.000532
M29L29FCttTtt88P.20.001493
M29L29FCttTtt77AY.1000.000322
M29L29ICttAtt77AY.430.000031
M29L29FCttTtt77AY.740.00081
M29L29LctTctC77B.1.1.3060.003069
M29L29LctTctC77B.1.258.170.000728
M29L29FCttTtt66AY.1190.000212
M29L29LctTctC66AY.240.002586
M29L29LctTctC66AY.250.000036
M29L29LctTctC66AY.30.00006
M29L29FCttTtt66AY.640.003571
M29L29FCttTtt66AY.7.10.000676
M29L29FCttTtt66B.1.1.2140.000333
M29L29LctTctC66B.1.1.700.002046
M29L29FCttTtt66B.1.2210.000426
M29L29FCttTtt66B.1.4290.000141
M29L29FCttTtt66B.1.5260.000141
M29L29ICttAtt55AY.1200.000186
M29L29FCttTtt55AY.260.000142
M29L29PcTtcCt55AY.430.000022
M29L29LctTctC55AY.470.000156
M29L29FCttTtt55B.1.1.4160.004525
M29L29delCTT---55B.1.1.70.000004
M29L29FCttTtt55B.1.36.80.005
M29L29FCttTtt55B.1.4270.000252
M29L29FCttTtt55C.370.00058
M29L29FCttTtt55P.1.150.001162
M29L29FCttTtt55Q.80.000825
M29L29FCttTtt44AY.1060.00134
M29L29LctTctC44AY.200.000155
M29L29FCttTtt44AY.230.000279
M29L29ICttAtt44AY.250.000024
M29L29FCttTtt44AY.350.000932
M29L29LctTctC44AY.390.000099
M29L29FCttTtt44AY.4.50.00043
M29L29LctTctC34AY.440.000018
M29L29LctTctA14AY.440.000006
M29L29FCttTtt44AY.60.000165
M29L29FCttTtt44AY.620.001743
M29L29LctTctC44B.1.1.250.002274
M29L29LctTctC44B.1.1.5190.000159
M29L29LctTctC44B.1.177.150.002524
M29L29LctTctC44B.1.177.860.000734
M29L29FCttTtt44B.1.2340.000528
M29L29FCttTtt44B.1.2580.000266
M29L29FCttTtt44B.1.3980.011905
M29L29FCttTtt44B.1.5250.000453
M29L29PcTtcCt44B.1.617.20.000015
M29L29FCttTtt44P.1.70.001277
M29L29LctTctC33AD.20.000657
M29L29RcTtcGt33All0.000001
M29L29del1cTtc-t23All0
M29L29del1ctTct-13All0
M29L29FCttTtt33AY.100.00159
M29L29ICttAtt33AY.1030.000019
M29L29FCttTtt33AY.1050.001929
M29L29FCttTtt33AY.116.10.000934
M29L29FCttTtt33AY.120.10.000963
M29L29FCttTtt33AY.130.000483
M29L29FCttTtt33AY.160.001139
M29L29VCttGtt33AY.40.000005
M29L29HcTtcAt23AY.440.000012
M29L29HcTTcAC13AY.440.000006
M29L29FCttTtt33AY.46.40.000494
M29L29LctTctC33AY.50.000062
M29L29LctTctC33AY.60.000123
M29L29FCttTtt33AY.980.000237
M29L29PcTtcCt33B.10.000027
M29L29ICttAtt33B.10.000027
M29L29FCttTtt33B.1.1.2190.015
M29L29FCttTtt33B.1.1.2940.003797
M29L29FCttTtt33B.1.1.370.000579
M29L29PcTtcCt33B.1.1.4090.008499
M29L29ICttAtt33B.1.1.70.000003
M29L29LctTctC33B.1.177.730.001699
M29L29LctTctC33B.1.2210.000213
M29L29LctTctC33B.1.258.110.001189
M29L29FCttTtt33B.1.5950.000783
M29L29FCttTtt33L.30.010638
M29L29LctTctC33P.10.000047
M29L29LctTctC33P.30.004785
M29L29LctTctC33R.10.00027
M29L29PcTTcCC220.111111
M29L29MCtTAtG220.111111
M29L29delCTT---220.111111
M29L29FCttTtt22A.20.001324
M29L29FCttTtt22A.2.50.000998
M29L29del2cTTc--22All0
M29L29MCtTAtG22All0
M29L29LctTctC22AY.1020.000053
M29L29FCttTtt22AY.1040.003968
M29L29FCttTtt22AY.190.002281
M29L29LctTctC22AY.290.000032
M29L29LctTctC12AY.3.10.000085
M29L29LctTctA12AY.3.10.000085
M29L29FCttTtt22AY.39.10.000079
M29L29PcTtcCt22AY.4.50.000215
M29L29ICttAtt22AY.440.000012
M29L29FCttTtt22AY.46.60.000144
M29L29LctTctC22AY.580.001815
M29L29LctTctC22AY.610.00021
M29L29LctTctC22AY.620.000871
M29L29PcTtcCt22AY.7.20.001119
M29L29PcTtcCt22AY.75.10.000361
M29L29FCttTtt22AY.840.000875
M29L29FCttTtt22AY.90.000135
M29L29LctTctC22AY.9.10.000167
M29L29FCttTtt22AY.950.001522
M29L29FCttTtt22AY.98.10.000097
M29L29LctTctC22AY.98.10.000097
M29L29FCttTtt22B0.000256
M29L29RcTtcGt22B.10.000018
M29L29delCTT---22B.10.000018
M29L29PcTtcCt22B.1.1.1610.007067
M29L29FCttTtt22B.1.1.280.000622
M29L29FCttTtt22B.1.1.3170.000823
M29L29FCttTtt22B.1.1.4120.015267
M29L29FCttTtt22B.1.1.4340.000697
M29L29VCttGtt22B.1.1.70.000002
M29L29FCttTtt22B.1.177.50.002484
M29L29LctTctC22B.1.177.570.000562
M29L29FCttTtt22B.1.177.730.001133
M29L29FCttTtt22B.1.2370.00995
M29L29FCttTtt22B.1.258.170.000208
M29L29LctTctC22B.1.3190.006098
M29L29FCttTtt22B.1.36.290.001035
M29L29FCttTtt22B.1.36.90.006431
M29L29FCttTtt22B.1.3610.002577
M29L29LctTctC22B.1.3960.001411
M29L29LctTctC22B.1.4060.012121
M29L29VCttGtt22B.1.4290.000047
M29L29LctTctC22B.1.5960.000174
M29L29FCttTtt22B.1.617.10.000258
M29L29HcTtcAt22B.1.617.20.000008
M29L29FCttTtt22B.1.6230.001073
M29L29FCttTtt22B.1.6370.000146
M29L29FCttTtt22B.400.000729
M29L29FCttTtt22D.20.00015
M29L29delCTT---22P.10.000032
M29L29HcTtcAt110.055556
M29L29LctTctC11A.2.50.000499
M29L29FCttTtt11A.290.005319
M29L29FCttTtt11AD.20.000219
M29L29FCttTtt11AE.10.011364
M29L29TCTtACt11All0
M29L29SCTtTCt11All0
M29L29FCttTtt11AT.10.005128
M29L29ICttAtt11AY.1020.000027
M29L29PcTtcCt11AY.1020.000027
M29L29FCttTtt11AY.1080.001103
M29L29FCttTtt11AY.1110.000183
M29L29LctTctC11AY.1130.000142
M29L29FCttTtt11AY.1130.000142
M29L29VCttGtt11AY.1140.000231
M29L29FCttTtt11AY.1140.000231
M29L29FCttTtt11AY.1160.000287
M29L29PcTtcCt11AY.1160.000287
M29L29LctTctC11AY.116.10.000311
M29L29FCttTtt11AY.120.000316
M29L29LctTctC11AY.120.000316
M29L29delCTT---11AY.1200.000037
M29L29HcTtcAt11AY.1200.000037
M29L29LctTctC11AY.1200.000037
M29L29HcTtcAt11AY.120.10.000321
M29L29FCttTtt11AY.120.20.001285
M29L29FCttTtt11AY.16.10.00047
M29L29FCttTtt11AY.210.001898
M29L29FCttTtt11AY.220.002092
M29L29ICttAtt11AY.230.00007
M29L29PcTtcCt11AY.230.00007
M29L29FCttTtt11AY.240.000431
M29L29LctTctC11AY.260.000028
M29L29TCTtACt11AY.30.00001
M29L29FCttTtt11AY.3.10.000085
M29L29FCttTtt11AY.340.000097
M29L29PcTtcCt11AY.340.000097
M29L29FCttTtt11AY.360.000148
M29L29LctTctC11AY.360.000148
M29L29PcTtcCt11AY.390.000025
M29L29LctTctC11AY.39.10.00004
M29L29ICttAtt11AY.40.000002
M29L29delCTT---11AY.40.000002
M29L29FCttTtt11AY.4.2.10.000149
M29L29delCTT---11AY.4.50.000107
M29L29FCttTtt11AY.400.000964
M29L29HcTtcAt11AY.430.000004
M29L29PcTTcCC11AY.440.000006
M29L29VCttGtt11AY.460.000104
M29L29ICttAtt11AY.460.000104
M29L29FCttTtt11AY.46.50.000198
M29L29FCttTtt11AY.5.30.000337
M29L29ICttAtt11AY.5.30.000337
M29L29FCttTtt11AY.5.40.000277
M29L29FCttTtt11AY.500.000799
M29L29FCttTtt11AY.530.000288
M29L29FCttTtt11AY.560.001605
M29L29FCttTtt11AY.590.00053
M29L29FCttTtt11AY.670.000464
M29L29FCttTtt11AY.680.000274
M29L29delCTT---11AY.680.000274
M29L29FCttTtt11AY.70.000196
M29L29ICttAtt11AY.70.000196
M29L29FCttTtt11AY.700.000209
M29L29FCttTtt11AY.710.000475
M29L29FCttTtt11AY.730.000665
M29L29LctTctC11AY.750.000056
M29L29FCttTtt11AY.75.10.00018
M29L29FCttTtt11AY.760.004831
M29L29FCttTtt11AY.780.001541
M29L29FCttTtt11AY.790.001211
M29L29FCttTtt11AY.820.001357
M29L29FCttTtt11AY.830.001724
M29L29delCTT---11AY.840.000437
M29L29FCttTtt11AY.850.000427
M29L29FCttTtt11AY.860.00083
M29L29FCttTtt11AY.870.000833
M29L29LctTctC11AY.90.000068
M29L29FCttTtt11AY.910.00073
M29L29FCttTtt11AY.920.000287
M29L29ICttAtt11AY.920.000287
M29L29LctTctC11AY.980.000079
M29L29PcTtcCt11AY.98.10.000048
M29L29FCttTtt11AY.99.20.000092
M29L29RcTtcGt11B0.000128
M29L29HcTtcAt11B0.000128
M29L29PcTtcCt11B0.000128
M29L29del1cTtc-t11B.10.000009
M29L29VCttGtt11B.1.10.000018
M29L29SCTtTCt11B.1.10.000018
M29L29FCttTtt11B.1.1.1170.009709
M29L29FCttTtt11B.1.1.1380.006061
M29L29LctTctC11B.1.1.2140.000055
M29L29FCttTtt11B.1.1.2220.000204
M29L29LctTctC11B.1.1.2400.004695
M29L29FCttTtt11B.1.1.2430.004082
M29L29FCttTtt11B.1.1.2840.000107
M29L29FCttTtt11B.1.1.3110.000358
M29L29ICttAtt11B.1.1.3180.000302
M29L29FCttTtt11B.1.1.3480.000796
M29L29VCtTGtC11B.1.1.3720.000689
M29L29LctTctC11B.1.1.3720.000689
M29L29HcTtcAt11B.1.1.70.000001
M29L29del2cTTc--11B.1.1.70.000001
M29L29PcTtcCt11B.1.1.70.000001
M29L29FCttTtt11B.1.110.30.000718
M29L29LctTctC11B.1.1150.021739
M29L29FCttTtt11B.1.1570.002985
M29L29FCttTtt11B.1.160.170.001701
M29L29delCTT---11B.1.1610.017241
M29L29PcTtcCt11B.1.1770.000013
M29L29ICttAtt11B.1.1770.000013
M29L29LctTctC11B.1.177.310.011494
M29L29FCttTtt11B.1.177.570.000281
M29L29LctTctC11B.1.177.690.001484
M29L29FCttTtt11B.1.177.70.000165
M29L29PcTtcCt11B.1.177.730.000566
M29L29LctTctC11B.1.177.770.000726
M29L29PcTtcCt11B.1.177.810.000189
M29L29VCttGtt11B.1.177.810.000189
M29L29FCttTtt11B.1.177.850.005435
M29L29ICttAtt11B.1.20.000009
M29L29FCttTtt11B.1.2140.003663
M29L29LctTctC11B.1.2220.001692
M29L29FCttTtt11B.1.2360.002053
M29L29LctTctC11B.1.2390.001221
M29L29FCttTtt11B.1.2410.000812
M29L29FCttTtt11B.1.258.140.00098
M29L29LctTctC11B.1.3060.005714
M29L29FCttTtt11B.1.3110.000275
M29L29LctTctC11B.1.3110.000275
M29L29FCttTtt11B.1.3360.002439
M29L29LctTctC11B.1.3400.004292
M29L29ICttAtt11B.1.3510.00003
M29L29LctTctC11B.1.3510.00003
M29L29FCttTtt11B.1.351.50.0006
M29L29FCttTtt11B.1.36.170.000494
M29L29FCttTtt11B.1.36.240.006173
M29L29LctTctC11B.1.36.290.000517
M29L29FCttTtt11B.1.36.390.002217
M29L29LctTctC11B.1.3620.001541
M29L29FCttTtt11B.1.4030.003268
M29L29FCttTtt11B.1.4670.04
M29L29FCttTtt11B.1.4700.001404
M29L29LctTctG11B.1.4970.000315
M29L29del1ctTct-11B.1.5250.000113
M29L29del2cTTc--11B.1.5250.000113
M29L29FCttTtt11B.1.5410.004425
M29L29FCttTtt11B.1.5640.000426
M29L29FCttTtt11B.1.5700.002941
M29L29FCttTtt11B.1.5750.000303
M29L29PcTtcCt11B.1.5760.000907
M29L29FCttTtt11B.1.5760.000907
M29L29delCTT---11B.1.5770.000687
M29L29FCttTtt11B.1.5960.000087
M29L29del1cTtc-t11B.1.5960.000087
M29L29ICttAtt11B.1.617.20.000004
M29L29FCttTtt11B.1.6210.000089
M29L29delCTT---11B.1.6270.00202
M29L29FCttTtt11B.1.6280.000352
M29L29ICttAtt11B.1.6370.000073
M29L29LctTctC11B.1.6370.000073
M29L29FCttTtt11B.120.00641
M29L29FCttTtt11C.140.004329
M29L29LctTctC11C.40.01
M29L29ICttAtt11D.20.000075
M29L29LctTctC11N.30.005814
M29L29FCttTtt11P.1.120.000484
M29L29delCTT---11P.1.150.000232
M29L29LctTctC11P.1.40.000977
M29L29FCttTtt11Q.40.000455
M29L29LctTctC11Q.80.000165
M29L29FCttTtt11R.10.00009