CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = M : CodonNum = 28

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
M28F28LnonsynTtcCtc20093199010.99044426604-26606
M28F28LnonsynttCttA200931820.0090578826604-26606
M28F28LnonsynTtCCtT2009370.0003483826604-26606
M28F28LnonsynttCttG2009330.00014930626604-26606
M28F28FsynttCttT1365113651126604-26606
M28F28deldelTTC---3030126604-26606
M28F28SnonsyntTctCc26200.76923126604-26606
M28F28SnonsyntTCtCA2620.076923126604-26606
M28F28SnonsyntTCtCT2620.076923126604-26606
M28F28SnonsyntTCtCG2620.076923126604-26606
M28F28VnonsynTtcGtc750.71428626604-26606
M28F28VnonsynTtCGtA720.28571426604-26606
M28F28YnonsyntTctAc640.66666726604-26606
M28F28YnonsyntTCtAT620.33333326604-26606
M28F28InonsynTtcAtc530.626604-26606
M28F28InonsynTtCAtT520.426604-26606
M28F28CnonsyntTctGc44126604-26606
M28F28XnonsyntTCtAA22126604-26606
M28F28del1delttCtt-22126604-26606
M28F28RnonsynTTcCGc11126604-26606
M28F28del2delTTc--c11126604-26606
M28F28PnonsynTTcCCc11126604-26606

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
M28F28LTtcCtc1990120093All0.003806
M28F28LttCttA18220093All0.000035
M28F28LTtCCtT720093All0.000001
M28F28LttCttG320093All0.000001
M28F28FttCttT1365113651All0.002611
M28F28LTtcCtc1107611078R.10.99694
M28F28LTtCCtT211078R.10.00018
M28F28LTtcCtc79417961B.1.1.70.007109
M28F28LttCttA147961B.1.1.70.000013
M28F28LTtCCtT47961B.1.1.70.000004
M28F28LttCttG27961B.1.1.70.000002
M28F28FttCttT39183918B.1.1.70.003507
M28F28FttCttT28372837AY.1190.100169
M28F28FttCttT15591559B.1.619.11
M28F28FttCttT11091109B.1.6190.966028
M28F28FttCttT482482P.1.70.153895
M28F28FttCttT374374B.10.003426
M28F28FttCttT371371AY.40.000577
M28F28LTtcCtc316317B.1.10.005733
M28F28LttCttA1317B.1.10.000018
M28F28FttCttT300300B.1.20.002642
M28F28FttCttT285285AY.4.2.10.042461
M28F28FttCttT275275B.1.617.20.001035
M28F28FttCttT197197AY.290.003107
M28F28FttCttT176176B.1.6210.015579
M28F28LttCttA154154B.1.6210.013632
M28F28FttCttT148148AY.1030.000919
M28F28LTtcCtc111117B.10.001017
M28F28LttCttA5117B.10.000046
M28F28LttCttG1117B.10.000009
M28F28FttCttT112112AY.430.000496
M28F28FttCttT103103AY.440.000627
M28F28LTtcCtc101101B.1.1.2200.187732
M28F28FttCttT8585P.10.001339
M28F28FttCttT8080AY.250.000481
M28F28FttCttT5656AY.30.000557
M28F28FttCttT4949B.1.10.000889
M28F28FttCttT4747AY.390.001161
M28F28LTtcCtc4545Q.80.007421
M28F28FttCttT4040B.1.1.3060.017536
M28F28FttCttT3838AY.1020.001008
M28F28FttCttT3838B.1.1770.0005
M28F28FttCttT3737AY.1210.005007
M28F28LTtcCtc3737B.1.20.000326
M28F28LTtcCtc3434B.1.1.5250.185792
M28F28FttCttT3232AY.1000.001472
M28F28delTTC---3030All0.000006
M28F28FttCttT2828B.1.177.870.020378
M28F28FttCttT2727P.20.005039
M28F28StTctCc2026All0.000004
M28F28StTCtCT226All0
M28F28StTCtCA226All0
M28F28StTCtCG226All0
M28F28FttCttT2424AY.4.20.000521
M28F28FttCttT2222B.1.1.5190.000874
M28F28FttCttT2222B.1.438.10.00236
M28F28FttCttT2020AY.3.10.001705
M28F28FttCttT2020AY.980.00158
M28F28FttCttT2020Q.80.003298
M28F28FttCttT1919B.1.3510.000565
M28F28FttCttT1919B.1.4270.000959
M28F28LTtcCtc1717B.1.1.3170.006999
M28F28FttCttT1616B.1.4290.000376
M28F28FttCttT1515AY.1170.001268
M28F28FttCttT1515AY.680.004106
M28F28LTtcCtc1515B.1.1.250.008528
M28F28LTtcCtc1515B.1.5440.090361
M28F28FttCttT1515B.1.5770.010309
M28F28FttCttT1414AY.230.000976
M28F28FttCttT1414AY.90.000946
M28F28LTtcCtc1414Q.10.001769
M28F28FttCttT1313AY.1180.000814
M28F28FttCttT1313AY.4.50.001397
M28F28FttCttT1313B.1.1600.000405
M28F28LTtcCtc1313B.1.4160.016497
M28F28FttCttT1313B.1.6090.006232
M28F28FttCttT1313N.90.077381
M28F28LTtcCtc1212B.1.1.100.013378
M28F28FttCttT1212P.1.150.002788
M28F28FttCttT1111AY.1200.000409
M28F28LTtcCtc1111AY.4.20.000239
M28F28FttCttT1111AY.400.010608
M28F28FttCttT1111B.1.177.210.000841
M28F28FttCttT1010AY.690.001867
M28F28FttCttT1010B.1.2400.002156
M28F28FttCttT1010B.1.360.001459
M28F28FttCttT1010B.1.5260.000235
M28F28LTtcCtc1010P.10.000158
M28F28FttCttT99A.280.02381
M28F28FttCttT99AY.1140.00208
M28F28LTtcCtc99AY.40.000014
M28F28FttCttT99B.1.1.1740.030405
M28F28FttCttT99B.1.177.600.001966
M28F28StTCtCT280.111111
M28F28StTctCc280.111111
M28F28StTCtCA280.111111
M28F28StTCtCG280.111111
M28F28FttCttT88AY.260.000226
M28F28FttCttT88AY.46.60.000578
M28F28FttCttT88AY.50.000165
M28F28delTTC---88B.1.177.210.000612
M28F28FttCttT88B.1.5610.003176
M28F28FttCttT88B.1.5960.000697
M28F28FttCttT88C.370.000929
M28F28FttCttT88Q.30.00116
M28F28VTtcGtc57All0.000001
M28F28VTtCGtA27All0
M28F28FttCttT77AY.210.013283
M28F28FttCttT77B.1.3360.017073
M28F28FttCttT77B.1.36.290.003621
M28F28LTtcCtc67B.1.617.20.000023
M28F28LttCttA17B.1.617.20.000004
M28F28YtTctAc46All0.000001
M28F28YtTCtAT26All0
M28F28FttCttT66AY.200.000233
M28F28FttCttT66AY.340.000582
M28F28LTtcCtc56AY.440.00003
M28F28LttCttA16AY.440.000006
M28F28FttCttT66AY.98.10.000291
M28F28FttCttT66AY.99.20.000553
M28F28FttCttT66B0.000767
M28F28FttCttT66B.1.1.2140.000333
M28F28LTtcCtc66B.1.177.730.003398
M28F28FttCttT66P.1.140.000287
M28F28FttCttT66P.1.160.002245
M28F28ITtcAtc35All0.000001
M28F28ITtCAtT25All0
M28F28StTctCc55AY.290.000079
M28F28FttCttT55B.1.1.3110.001791
M28F28FttCttT55B.1.1.3720.003444
M28F28delTTC---55B.1.1.70.000004
M28F28FttCttT55B.1.160.260.012107
M28F28FttCttT55B.1.177.70.000824
M28F28FttCttT55B.1.2210.000355
M28F28FttCttT55B.1.2340.00066
M28F28FttCttT55B.1.2430.000348
M28F28LTtcCtc55B.1.3750.004098
M28F28LTtcCtc55B.1.5760.004533
M28F28YtTCtAT240.111111
M28F28YtTctAc240.111111
M28F28CtTctGc44All0.000001
M28F28StTctCc44AY.100.00212
M28F28FttCttT44AY.116.10.001246
M28F28LTtcCtc44AY.430.000018
M28F28FttCttT44AY.470.000124
M28F28FttCttT44AY.700.000834
M28F28LTtcCtc44B0.000511
M28F28LTtcCtc44B.1.1600.000125
M28F28FttCttT44B.1.177.80.00301
M28F28LTtcCtc44B.1.2580.000266
M28F28LTtcCtc44B.1.3690.001141
M28F28LTtcCtc44B.1.5260.000094
M28F28FttCttT44B.1.617.10.000516
M28F28FttCttT44B.280.013115
M28F28FttCttT330.166667
M28F28FttCttT33AY.450.000365
M28F28FttCttT33AY.530.000863
M28F28FttCttT33AY.540.000286
M28F28FttCttT33AY.60.000123
M28F28FttCttT33AY.9.20.00011
M28F28FttCttT33AY.910.002191
M28F28delTTC---33B.10.000027
M28F28FttCttT33B.1.1.2200.005576
M28F28LTtcCtc33B.1.1.2220.000612
M28F28LTtcCtc33B.1.1.3110.001074
M28F28LTtcCtc33B.1.1.390.001529
M28F28FttCttT33B.1.1.390.001529
M28F28FttCttT33B.1.1.4130.02069
M28F28LTtcCtc33B.1.1.5210.016043
M28F28FttCttT33B.1.1.630.001157
M28F28FttCttT33B.1.1180.020134
M28F28LTtcCtc23B.1.1770.000026
M28F28LttCttA13B.1.1770.000013
M28F28FttCttT33B.1.177.40.000633
M28F28FttCttT33B.1.177.730.001699
M28F28FttCttT33B.1.2560.051724
M28F28FttCttT33B.1.2580.0002
M28F28FttCttT33B.1.3110.000824
M28F28FttCttT33B.1.3490.002144
M28F28FttCttT33B.1.351.50.001799
M28F28FttCttT33B.1.3960.002117
M28F28LTtcCtc33B.1.3990.005803
M28F28LTtcCtc33B.1.4290.000071
M28F28FttCttT33B.6.30.078947
M28F28XtTCtAA220.111111
M28F28delTTC---220.111111
M28F28LttCttA220.111111
M28F28VTtCGtA220.111111
M28F28FttCttT22A0.000774
M28F28XtTCtAA22All0
M28F28del1ttCtt-22All0
M28F28FttCttT22AY.100.00106
M28F28FttCttT22AY.1050.001286
M28F28FttCttT22AY.1100.000225
M28F28FttCttT22AY.1130.000285
M28F28LTtcCtc22AY.1180.000125
M28F28FttCttT22AY.130.000322
M28F28LTtcCtc22AY.260.000057
M28F28FttCttT22AY.29.10.000441
M28F28LTtcCtc22AY.30.00002
M28F28FttCttT22AY.350.000466
M28F28FttCttT22AY.360.000296
M28F28FttCttT22AY.380.000999
M28F28FttCttT22AY.420.00008
M28F28FttCttT22AY.5.30.000675
M28F28FttCttT22AY.510.001818
M28F28FttCttT22AY.610.00021
M28F28FttCttT22AY.750.000112
M28F28FttCttT22AY.880.001768
M28F28FttCttT22AY.9.10.000167
M28F28FttCttT22AY.940.000885
M28F28FttCttT22B.1.1.1350.00939
M28F28LTtcCtc22B.1.1.1530.002191
M28F28FttCttT22B.1.1.2160.001781
M28F28FttCttT22B.1.1.2220.000408
M28F28LTtcCtc22B.1.1.2910.001485
M28F28FttCttT22B.1.1.330.000842
M28F28FttCttT22B.1.1.3480.001592
M28F28FttCttT22B.1.1.4170.005405
M28F28LTtcCtc22B.1.1.510.003436
M28F28VTtcGtc22B.1.1.70.000002
M28F28FttCttT22B.1.1.700.000682
M28F28LTtcCtc22B.1.1.830.00542
M28F28FttCttT22B.1.177.560.001335
M28F28LTtcCtc22B.1.177.80.001505
M28F28VTtcGtc22B.1.20.000018
M28F28FttCttT22B.1.2410.001623
M28F28FttCttT22B.1.258.170.000208
M28F28LTtcCtc22B.1.3510.000059
M28F28FttCttT22B.1.351.20.000605
M28F28FttCttT22B.1.36.180.00084
M28F28FttCttT22B.1.3750.001639
M28F28FttCttT22B.1.4740.003802
M28F28FttCttT22B.1.5750.000607
M28F28LTtcCtc22B.1.5960.000174
M28F28FttCttT22B.1.6230.001073
M28F28FttCttT22B.1.6260.011429
M28F28LTtcCtc22B.1.6370.000146
M28F28FttCttT22C.290.125
M28F28FttCttT22C.36.30.001134
M28F28delTTC---22P.10.000032
M28F28FttCttT22Q.10.000253
M28F28ITtcAtc110.055556
M28F28LTtcCtc11A0.000387
M28F28FttCttT11A.10.000282
M28F28FttCttT11A.2.20.001689
M28F28FttCttT11A.30.002096
M28F28FttCttT11A.50.001923
M28F28FttCttT11AD.20.000219
M28F28del2TTc--c11All0
M28F28RTTcCGc11All0
M28F28PTTcCCc11All0
M28F28LTtcCtc11AY.1160.000287
M28F28delTTC---11AY.1200.000037
M28F28ITtCAtT11AY.120.10.000321
M28F28FttCttT11AY.23.10.000417
M28F28FttCttT11AY.240.000431
M28F28LTtcCtc11AY.250.000006
M28F28FttCttT11AY.39.20.001541
M28F28delTTC---11AY.40.000002
M28F28delTTC---11AY.4.50.000107
M28F28LTtcCtc11AY.420.00004
M28F28del1ttCtt-11AY.430.000004
M28F28RTTcCGc11AY.430.000004
M28F28CtTctGc11AY.430.000004
M28F28ITtCAtT11AY.440.000006
M28F28StTctCc11AY.440.000006
M28F28FttCttT11AY.460.000104
M28F28FttCttT11AY.46.10.001027
M28F28FttCttT11AY.46.30.000934
M28F28FttCttT11AY.46.40.000165
M28F28LTtcCtc11AY.520.000814
M28F28FttCttT11AY.550.000917
M28F28FttCttT11AY.590.00053
M28F28FttCttT11AY.650.000533
M28F28FttCttT11AY.660.00107
M28F28delTTC---11AY.680.000274
M28F28FttCttT11AY.70.000196
M28F28FttCttT11AY.7.20.000559
M28F28delTTC---11AY.840.000437
M28F28ITtcAtc11AY.850.000427
M28F28FttCttT11AY.870.000833
M28F28LTtcCtc11AY.9.10.000084
M28F28LTtcCtc11AY.9.20.000037
M28F28FttCttT11AY.920.000287
M28F28FttCttT11AY.930.000273
M28F28FttCttT11AY.950.000761
M28F28FttCttT11AY.99.10.001553
M28F28StTctCc11B0.000128
M28F28StTctCc11B.10.000009
M28F28CtTctGc11B.10.000009
M28F28ITtcAtc11B.1.10.000018
M28F28FttCttT11B.1.1.10.000327
M28F28FttCttT11B.1.1.100.001115
M28F28LTtcCtc11B.1.1.1960.005714
M28F28LTtcCtc11B.1.1.1980.001468
M28F28LTtcCtc11B.1.1.2140.000055
M28F28LTtcCtc11B.1.1.2360.006897
M28F28FttCttT11B.1.1.2360.006897
M28F28FttCttT11B.1.1.250.000569
M28F28LTtcCtc11B.1.1.2630.001558
M28F28FttCttT11B.1.1.2630.001558
M28F28LTtcCtc11B.1.1.2770.000759
M28F28FttCttT11B.1.1.2840.000107
M28F28LTtcCtc11B.1.1.3050.003861
M28F28del2TTc--c11B.1.1.3120.001912
M28F28FttCttT11B.1.1.3170.000412
M28F28LTtcCtc11B.1.1.330.000421
M28F28FttCttT11B.1.1.370.000193
M28F28FttCttT11B.1.1.3890.006061
M28F28FttCttT11B.1.1.3970.002252
M28F28LTtcCtc11B.1.1.4090.002833
M28F28FttCttT11B.1.1.4350.034483
M28F28LTtcCtc11B.1.1.4640.001473
M28F28FttCttT11B.1.1.500.000679
M28F28LTtcCtc11B.1.1.5190.00004
M28F28LTtcCtc11B.1.1.5220.017241
M28F28FttCttT11B.1.1.5230.001563
M28F28FttCttT11B.1.1.5260.003546
M28F28CtTctGc11B.1.1.70.000001
M28F28LTtcCtc11B.1.1.80.003584
M28F28FttCttT11B.1.1.990.02381
M28F28FttCttT11B.1.1110.001175
M28F28StTctCc11B.1.1590.012195
M28F28StTctCc11B.1.1600.000031
M28F28FttCttT11B.1.160.160.000929
M28F28FttCttT11B.1.160.220.006757
M28F28FttCttT11B.1.160.80.001289
M28F28delTTC---11B.1.1610.017241
M28F28LTtcCtc11B.1.1610.017241
M28F28CtTctGc11B.1.1770.000013
M28F28FttCttT11B.1.177.180.00116
M28F28FttCttT11B.1.177.200.001517
M28F28LTtCCtT11B.1.177.210.000076
M28F28FttCttT11B.1.177.320.00135
M28F28FttCttT11B.1.177.330.001645
M28F28FttCttT11B.1.177.450.000381
M28F28FttCttT11B.1.177.540.000606
M28F28FttCttT11B.1.177.570.000281
M28F28FttCttT11B.1.177.620.001192
M28F28FttCttT11B.1.177.720.00339
M28F28FttCttT11B.1.177.810.000189
M28F28LTtcCtc11B.1.177.840.006667
M28F28FttCttT11B.1.177.860.000183
M28F28FttCttT11B.1.1900.01
M28F28StTctCc11B.1.20.000009
M28F28FttCttT11B.1.214.20.0006
M28F28FttCttT11B.1.220.001318
M28F28FttCttT11B.1.2220.001692
M28F28LTtcCtc11B.1.2790.000514
M28F28FttCttT11B.1.2810.021739
M28F28FttCttT11B.1.3010.005917
M28F28FttCttT11B.1.3050.002151
M28F28StTctCc11B.1.3110.000275
M28F28FttCttT11B.1.36.10.00114
M28F28FttCttT11B.1.36.120.009615
M28F28LTtcCtc11B.1.36.180.00042
M28F28YtTctAc11B.1.3690.000285
M28F28FttCttT11B.1.3720.010989
M28F28FttCttT11B.1.4220.000812
M28F28FttCttT11B.1.4590.004082
M28F28FttCttT11B.1.466.20.000391
M28F28LTtcCtc11B.1.4680.005714
M28F28FttCttT11B.1.4700.001404
M28F28LTtcCtc11B.1.4970.000315
M28F28VTtcGtc11B.1.5170.000427
M28F28FttCttT11B.1.5250.000113
M28F28YtTctAc11B.1.5260.000024
M28F28LTtcCtc11B.1.5300.007143
M28F28LTtcCtc11B.1.5330.009615
M28F28FttCttT11B.1.5380.008065
M28F28FttCttT11B.1.5450.014493
M28F28FttCttT11B.1.5680.001111
M28F28StTctCc11B.1.5760.000907
M28F28delTTC---11B.1.5770.000687
M28F28FttCttT11B.1.5800.004065
M28F28LttCttA11B.1.5880.00091
M28F28LTtcCtc11B.1.6090.000479
M28F28delTTC---11B.1.6090.000479
M28F28FttCttT11B.1.6120.002653
M28F28del1ttCtt-11B.1.617.20.000004
M28F28FttCttT11B.1.6180.004032
M28F28FttCttT11B.1.621.10.000506
M28F28delTTC---11B.1.6270.00202
M28F28LTtcCtc11B.1.6280.000352
M28F28FttCttT11B.1.6280.000352
M28F28FttCttT11B.1.6370.000073
M28F28FttCttT11B.1.6380.052632
M28F28LttCttA11B.6.60.000889
M28F28FttCttT11C.360.000911
M28F28StTctCc11D.20.000075
M28F28FttCttT11D.20.000075
M28F28FttCttT11N.40.004255
M28F28LttCttA11P.1.10.000318
M28F28FttCttT11P.1.120.000484
M28F28delTTC---11P.1.150.000232
M28F28FttCttT11P.1.20.001156
M28F28LTtcCtc11P.20.000187
M28F28FttCttT11Q.40.000455
M28F28PTTcCCc11R.10.00009