CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = M : CodonNum = 26

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
M26F26FsynttCttT12521252126598-26600
M26F26LnonsynTtcCtc1731150.6647426598-26600
M26F26LnonsynttCttA173540.31213926598-26600
M26F26LnonsynttCttG17340.023121426598-26600
M26F26SnonsyntTctCc4646126598-26600
M26F26deldelTTC---4343126598-26600
M26F26CnonsyntTctGc2727126598-26600
M26F26VnonsynTtcGtc2121126598-26600
M26F26YnonsyntTctAc1515126598-26600
M26F26InonsynTtcAtc88126598-26600
M26F26DnonsynTTcGAc66126598-26600
M26F26del1delttCtt-540.826598-26600
M26F26del1delTtCCt-510.226598-26600
M26F26NnonsynTTcAAc33126598-26600
M26F26GnonsynTTCGGA22126598-26600
M26F26HnonsynTTcCAc22126598-26600
M26F26AnonsynTTCGCA11126598-26600
M26F26del2delTTc--c11126598-26600
M26F26KnonsynTTCAAG11126598-26600

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
M26F26FttCttT12521252All0.000239
M26F26FttCttT508508B.1.4740.965779
M26F26LTtcCtc115173All0.000022
M26F26LttCttA54173All0.00001
M26F26LttCttG4173All0.000001
M26F26FttCttT111111C.370.012883
M26F26FttCttT8080B.10.000733
M26F26FttCttT8080B.1.4270.00404
M26F26FttCttT6262B.1.2340.00818
M26F26LttCttA3761B.1.1.70.000033
M26F26LTtcCtc2461B.1.1.70.000021
M26F26FttCttT6161B.1.3690.017399
M26F26FttCttT5858B.1.1.70.000052
M26F26FttCttT5353AY.40.000082
M26F26StTctCc4646All0.000009
M26F26delTTC---4343All0.000008
M26F26StTctCc3030B.1.1.70.000027
M26F26CtTctGc2727All0.000005
M26F26FttCttT2626B.1.4290.000612
M26F26FttCttT2424AY.250.000144
M26F26VTtcGtc2121All0.000004
M26F26LTtcCtc2020B.1.4290.000471
M26F26CtTctGc1717B.1.1.70.000015
M26F26YtTctAc1515All0.000003
M26F26FttCttT1414AY.440.000085
M26F26FttCttT1414B.1.617.20.000053
M26F26LTtcCtc1212AY.250.000072
M26F26LTtcCtc1111AY.1030.000068
M26F26FttCttT1010B.1.3490.007148
M26F26LTtcCtc69AY.40.000009
M26F26LttCttA39AY.40.000005
M26F26ITtcAtc88All0.000002
M26F26FttCttT88AY.1190.000282
M26F26FttCttT88B.1.10.000145
M26F26YtTctAc77AY.40.000011
M26F26delTTC---77B.1.177.210.000535
M26F26FttCttT77B.1.5960.00061
M26F26CtTctGc77B.1.617.20.000026
M26F26DTTcGAc66All0.000001
M26F26LTtcCtc46AY.200.000155
M26F26LttCttA26AY.200.000078
M26F26LTtcCtc66B.10.000055
M26F26YtTctAc66B.1.1.70.000005
M26F26delTTC---66B.1.1.70.000005
M26F26del1ttCtt-45All0.000001
M26F26del1TtCCt-15All0
M26F26FttCttT55AY.1130.000712
M26F26FttCttT55AY.610.000524
M26F26VTtcGtc55B.1.1.70.000004
M26F26FttCttT55B.1.3510.000149
M26F26FttCttT55B.1.4130.021277
M26F26FttCttT44AY.4.20.000087
M26F26LttCttA34AY.430.000013
M26F26LTtcCtc14AY.430.000004
M26F26FttCttT44B.1.1.3350.051948
M26F26StTctCc44B.1.20.000035
M26F26FttCttT44B.1.20.000035
M26F26LTtcCtc44B.1.20.000035
M26F26FttCttT44B.1.5250.000453
M26F26NTTcAAc33All0.000001
M26F26FttCttT33AY.1000.000138
M26F26FttCttT33AY.200.000117
M26F26FttCttT33AY.330.0002
M26F26FttCttT33AY.360.000445
M26F26VTtcGtc33AY.40.000005
M26F26VTtcGtc33AY.430.000013
M26F26FttCttT33AY.430.000013
M26F26LttCttA33AY.99.20.000276
M26F26delTTC---33B.10.000027
M26F26FttCttT33B.1.1.5190.000119
M26F26delTTC---33B.1.20.000026
M26F26FttCttT33B.1.621.10.001517
M26F26LTtcCtc33B.1.6280.001057
M26F26FttCttT33B.1.6370.000219
M26F26FttCttT33C.37.10.007853
M26F26FttCttT33P.1.70.000958
M26F26GTTCGGA220.111111
M26F26HTTcCAc220.111111
M26F26delTTC---220.111111
M26F26FttCttT220.111111
M26F26LttCttG220.111111
M26F26GTTCGGA22All0
M26F26HTTcCAc22All0
M26F26FttCttT22AY.1210.000271
M26F26VTtcGtc22AY.240.000862
M26F26VTtcGtc22AY.250.000012
M26F26LttCttG22AY.260.000057
M26F26LTtcCtc22AY.30.00002
M26F26FttCttT22AY.390.000049
M26F26DTTcGAc22AY.430.000009
M26F26VTtcGtc22AY.470.000062
M26F26FttCttT22AY.750.000112
M26F26FttCttT22AY.75.10.000361
M26F26FttCttT22AY.9.20.000073
M26F26FttCttT22AY.950.001522
M26F26CtTctGc22AY.980.000158
M26F26FttCttT22AY.99.20.000184
M26F26StTctCc22B.10.000018
M26F26LTtcCtc12B.1.10.000018
M26F26LttCttA12B.1.10.000018
M26F26LttCttA22B.1.1.2770.001517
M26F26FttCttT22B.1.1.4640.002946
M26F26FttCttT22B.1.1770.000026
M26F26LTtcCtc22B.1.177.600.000437
M26F26FttCttT22B.1.177.70.00033
M26F26ITtcAtc22B.1.20.000018
M26F26FttCttT22B.1.438.10.000215
M26F26StTctCc22B.1.5960.000174
M26F26FttCttT22B.1.6090.000959
M26F26StTctCc22B.1.617.20.000008
M26F26LTtcCtc22B.1.617.20.000008
M26F26FttCttT22B.1.6210.000177
M26F26delTTC---22P.10.000032
M26F26LTtcCtc22P.10.000032
M26F26ATTCGCA11All0
M26F26del2TTc--c11All0
M26F26KTTCAAG11All0
M26F26FttCttT11AP.10.001502
M26F26FttCttT11AY.10.000396
M26F26FttCttT11AY.1020.000027
M26F26FttCttT11AY.1030.000006
M26F26StTctCc11AY.1030.000006
M26F26FttCttT11AY.1110.000183
M26F26ITtcAtc11AY.1130.000142
M26F26VTtcGtc11AY.1130.000142
M26F26delTTC---11AY.1200.000037
M26F26FttCttT11AY.1200.000037
M26F26LTtcCtc11AY.120.20.001285
M26F26delTTC---11AY.140.000088
M26F26FttCttT11AY.230.00007
M26F26LTtcCtc11AY.230.00007
M26F26FttCttT11AY.260.000028
M26F26FttCttT11AY.290.000016
M26F26LTtcCtc11AY.290.000016
M26F26NTTcAAc11AY.30.00001
M26F26DTTcGAc11AY.30.00001
M26F26FttCttT11AY.30.00001
M26F26VTtcGtc11AY.30.00001
M26F26ITtcAtc11AY.30.00001
M26F26LttCttA11AY.330.000067
M26F26delTTC---11AY.390.000025
M26F26StTctCc11AY.390.000025
M26F26delTTC---11AY.40.000002
M26F26LttCttA11AY.4.20.000022
M26F26delTTC---11AY.4.50.000107
M26F26ITtcAtc11AY.4.50.000107
M26F26delTTC---11AY.430.000004
M26F26del1TtCCt-11AY.440.000006
M26F26LTtcCtc11AY.440.000006
M26F26FttCttT11AY.450.000122
M26F26FttCttT11AY.50.000021
M26F26FttCttT11AY.60.000041
M26F26ITtcAtc11AY.670.000464
M26F26FttCttT11AY.680.000274
M26F26delTTC---11AY.680.000274
M26F26del2TTc--c11AY.750.000056
M26F26delTTC---11AY.840.000437
M26F26FttCttT11AY.880.000884
M26F26del1ttCtt-11AY.9.20.000037
M26F26YtTctAc11AY.940.000443
M26F26NTTcAAc11AY.990.001049
M26F26DTTcGAc11AY.990.001049
M26F26VTtcGtc11AY.990.001049
M26F26ITtcAtc11AY.990.001049
M26F26del1ttCtt-11B0.000128
M26F26del1ttCtt-11B.10.000009
M26F26DTTcGAc11B.10.000009
M26F26ATTCGCA11B.1.10.000018
M26F26FttCttT11B.1.1.10.000327
M26F26FttCttT11B.1.1.100.001115
M26F26LTtcCtc11B.1.1.2140.000055
M26F26FttCttT11B.1.1.250.000569
M26F26LttCttA11B.1.1.280.000311
M26F26delTTC---11B.1.1.2880.001916
M26F26FttCttT11B.1.1.3020.002075
M26F26LTtcCtc11B.1.1.3060.000438
M26F26delTTC---11B.1.1.3120.001912
M26F26delTTC---11B.1.1.3430.020833
M26F26KTTCAAG11B.1.1.70.000001
M26F26del1ttCtt-11B.1.1.70.000001
M26F26FttCttT11B.1.1.700.000341
M26F26delTTC---11B.1.1.700.000341
M26F26FttCttT11B.1.1570.002985
M26F26FttCttT11B.1.1600.000031
M26F26delTTC---11B.1.160.330.004425
M26F26delTTC---11B.1.1610.017241
M26F26StTctCc11B.1.177.210.000076
M26F26FttCttT11B.1.177.210.000076
M26F26LTtcCtc11B.1.177.440.000519
M26F26FttCttT11B.1.177.600.000218
M26F26FttCttT11B.1.177.620.001192
M26F26LTtcCtc11B.1.177.860.000183
M26F26FttCttT11B.1.2210.000071
M26F26StTctCc11B.1.2210.000071
M26F26FttCttT11B.1.2370.004975
M26F26LTtcCtc11B.1.2410.000812
M26F26FttCttT11B.1.2430.00007
M26F26FttCttT11B.1.351.20.000303
M26F26NTTcAAc11B.1.360.000146
M26F26delTTC---11B.1.3960.000706
M26F26LTtcCtc11B.1.4090.000781
M26F26FttCttT11B.1.4170.028571
M26F26FttCttT11B.1.466.20.000391
M26F26ITtcAtc11B.1.4970.000315
M26F26LTtcCtc11B.1.5260.000024
M26F26delTTC---11B.1.5770.000687
M26F26delTTC---11B.1.5950.000261
M26F26LTtcCtc11B.1.5960.000087
M26F26delTTC---11B.1.6090.000479
M26F26FttCttT11B.1.617.10.000129
M26F26DTTcGAc11B.1.617.20.000004
M26F26VTtcGtc11B.1.617.20.000004
M26F26YtTctAc11B.1.617.20.000004
M26F26delTTC---11B.1.6270.00202
M26F26StTctCc11B.400.000364
M26F26LTtcCtc11B.6.60.000889
M26F26CtTctGc11C.370.000116
M26F26StTctCc11D.20.000075
M26F26FttCttT11P.10.000016
M26F26LTtcCtc11P.1.140.000048
M26F26delTTC---11P.1.150.000232
M26F26FttCttT11P.1.150.000232
M26F26LTtcCtc11R.10.00009