CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = M : CodonNum = 215

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
M215D215DsyngaCgaT13431343127165-27167
M215D215YnonsynGacTac186186127165-27167
M215D215deldelGAC---156156127165-27167
M215D215NnonsynGacAac128128127165-27167
M215D215GnonsyngAcgGc37350.94594627165-27167
M215D215GnonsyngACgGA3720.054054127165-27167
M215D215HnonsynGacCac2222127165-27167
M215D215EnonsyngaCgaA13110.84615427165-27167
M215D215EnonsyngaCgaG1320.15384627165-27167
M215D215del1delGac-ac930.33333327165-27167
M215D215del1delGaC-aT920.22222227165-27167
M215D215del1delGaC-aG920.22222227165-27167
M215D215del1delGAC-NN910.11111127165-27167
M215D215del1delgAcg-c910.11111127165-27167
M215D215KnonsynGaCAaG860.7527165-27167
M215D215KnonsynGaCAaA820.2527165-27167
M215D215AnonsyngAcgCc66127165-27167
M215D215VnonsyngAcgTc44127165-27167
M215D215SnonsynGAcAGc22127165-27167
M215D215XnonsynGaCTaA22127165-27167
M215D215del2delGAc--c210.527165-27167
M215D215del2delGAC--T210.527165-27167
M215D215RnonsynGACAGA11127165-27167

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
M215D215DgaCgaT13431343All0.000257
M215D215YGacTac186186All0.000036
M215D215DgaCgaT175175AY.1030.001087
M215D215DgaCgaT169169AY.230.011788
M215D215delGAC---156156All0.00003
M215D215DgaCgaT156156AY.430.000691
M215D215DgaCgaT142142B.1.1.70.000127
M215D215delGAC---138138B.1.177.210.010553
M215D215NGacAac128128All0.000024
M215D215DgaCgaT123123B.1.617.20.000463
M215D215DgaCgaT7676AY.40.000118
M215D215NGacAac7373B.1.5790.820225
M215D215DgaCgaT4545AY.250.000271
M215D215DgaCgaT4242AY.30.000418
M215D215DgaCgaT4040AY.440.000243
M215D215DgaCgaT3838B.1.1600.001185
M215D215GgAcgGc3537All0.000007
M215D215GgACgGA237All0
M215D215DgaCgaT3535AY.420.001408
M215D215YGacTac2727AY.40.000042
M215D215YGacTac2727B.1.1.70.000024
M215D215NGacAac2424B.1.5260.000564
M215D215HGacCac2222All0.000004
M215D215DgaCgaT2222B.1.20.000194
M215D215YGacTac1919B.1.2430.001322
M215D215DgaCgaT1717AY.200.000661
M215D215NGacAac1414B.1.1.70.000013
M215D215EgaCgaA1113All0.000002
M215D215EgaCgaG213All0
M215D215YGacTac1313B.10.000119
M215D215delGAC---1313B.1.1.70.000012
M215D215DgaCgaT1212B.10.00011
M215D215YGacTac1111AY.250.000066
M215D215YGacTac1111B.1.617.20.000041
M215D215del1Gac-ac39All0.000001
M215D215del1GaC-aT29All0
M215D215del1GaC-aG29All0
M215D215del1gAcg-c19All0
M215D215del1GAC-NN19All0
M215D215DgaCgaT99AY.390.000222
M215D215DgaCgaT99AY.39.10.000357
M215D215DgaCgaT99B.1.10.000163
M215D215KGaCAaG68All0.000001
M215D215KGaCAaA28All0
M215D215DgaCgaT88AY.330.000534
M215D215DgaCgaT88AY.98.10.000387
M215D215DgaCgaT77AY.1020.000186
M215D215DgaCgaT77AY.4.2.10.001043
M215D215DgaCgaT77AY.410.002058
M215D215GgAcgGc77AY.430.000031
M215D215AgAcgCc66All0.000001
M215D215DgaCgaT66AY.1000.000276
M215D215GgAcgGc66AY.980.000474
M215D215HGacCac66B.1.1.70.000005
M215D215DgaCgaT66B.1.4290.000141
M215D215YGacTac55AY.1030.000031
M215D215DgaCgaT55AY.130.000805
M215D215DgaCgaT55AY.4.20.000108
M215D215YGacTac55AY.430.000022
M215D215YGacTac55AY.440.00003
M215D215KGaCAaG55B.1.177.210.000382
M215D215GgAcgGc55B.1.617.20.000019
M215D215DgaCgaT55B.1.6190.004355
M215D215DgaCgaT55B.1.6370.000365
M215D215VgAcgTc44All0.000001
M215D215YGacTac44AY.1170.000338
M215D215DgaCgaT44AY.1200.000149
M215D215HGacCac44AY.30.00004
M215D215YGacTac44AY.390.000099
M215D215DgaCgaT44AY.470.000124
M215D215DgaCgaT44AY.610.000419
M215D215NGacAac44B.10.000037
M215D215DgaCgaT44B.1.1770.000053
M215D215DgaCgaT44B.1.3910.00451
M215D215DgaCgaT44B.1.5250.000453
M215D215DgaCgaT44B.1.5260.000094
M215D215YGacTac44D.20.0003
M215D215DgaCgaT44Q.40.001819
M215D215DgaCgaT33AY.260.000085
M215D215YGacTac33AY.290.000047
M215D215GgAcgGc33AY.40.000005
M215D215AgAcgCc33AY.4.20.000065
M215D215GgAcgGc33AY.440.000018
M215D215NGacAac33AY.440.000018
M215D215DgaCgaT33AY.460.000312
M215D215DgaCgaT33AY.50.000062
M215D215DgaCgaT33AY.9.10.000251
M215D215delGAC---33B.10.000027
M215D215del1GaC-aG23B.1.177.210.000153
M215D215del1GAC-NN13B.1.177.210.000076
M215D215YGacTac33B.1.177.370.081081
M215D215DgaCgaT33B.1.2430.000209
M215D215DgaCgaT33B.1.258.170.000312
M215D215DgaCgaT33B.1.3510.000089
M215D215HGacCac33D.20.000225
M215D215DgaCgaT33P.10.000047
M215D215EgaCgaA220.111111
M215D215GgAcgGc120.055556
M215D215GgACgGA120.055556
M215D215DgaCgaT22A.20.001324
M215D215XGaCTaA22All0
M215D215SGAcAGc22All0
M215D215del2GAc--c12All0
M215D215del2GAC--T12All0
M215D215DgaCgaT22AY.1170.000169
M215D215DgaCgaT22AY.1190.000071
M215D215YGacTac22AY.140.000176
M215D215YGacTac22AY.30.00002
M215D215DgaCgaT22AY.34.10.00102
M215D215AgAcgCc22AY.40.000003
M215D215NGacAac22AY.430.000009
M215D215VgAcgTc22AY.430.000009
M215D215delGAC---22AY.440.000012
M215D215YGacTac22AY.450.000243
M215D215YGacTac22AY.46.60.000144
M215D215NGacAac22AY.470.000062
M215D215DgaCgaT22AY.5.40.000553
M215D215YGacTac22AY.540.000191
M215D215YGacTac22AY.610.00021
M215D215DgaCgaT22AY.750.000112
M215D215DgaCgaT22AY.980.000158
M215D215del1Gac-ac22B0.000256
M215D215DgaCgaT22B0.000256
M215D215HGacCac22B.10.000018
M215D215DgaCgaT22B.1.1.390.001019
M215D215DgaCgaT22B.1.1.5190.000079
M215D215GgAcgGc22B.1.1.70.000002
M215D215EgaCgaA22B.1.1.70.000002
M215D215del1GaC-aT22B.1.1.70.000002
M215D215KGaCAaG12B.1.1.70.000001
M215D215KGaCAaA12B.1.1.70.000001
M215D215YGacTac22B.1.1770.000026
M215D215DgaCgaT22B.1.220.002635
M215D215DgaCgaT22B.1.2210.000142
M215D215DgaCgaT22B.1.360.000292
M215D215DgaCgaT22B.1.438.10.000215
M215D215DgaCgaT22B.1.4590.008163
M215D215DgaCgaT22B.1.5320.012422
M215D215EgaCgaA22B.1.617.20.000008
M215D215DgaCgaT22B.6.60.001778
M215D215YGacTac22P.10.000032
M215D215DgaCgaT22P.1.60.003891
M215D215DgaCgaT22Q.30.00029
M215D215KGaCAaA110.055556
M215D215YGacTac110.055556
M215D215XGaCTaA110.055556
M215D215RGACAGA110.055556
M215D215NGacAac110.055556
M215D215SGAcAGc110.055556
M215D215DgaCgaT11A.10.000282
M215D215DgaCgaT11A.2.50.000499
M215D215DgaCgaT11AE.80.000489
M215D215RGACAGA11All0
M215D215HGacCac11AY.1020.000027
M215D215NGacAac11AY.1030.000006
M215D215DgaCgaT11AY.1060.000335
M215D215DgaCgaT11AY.1100.000113
M215D215YGacTac11AY.1100.000113
M215D215DgaCgaT11AY.1140.000231
M215D215YGacTac11AY.1190.000035
M215D215NGacAac11AY.1200.000037
M215D215HGacCac11AY.1200.000037
M215D215YGacTac11AY.1200.000037
M215D215DgaCgaT11AY.120.20.001285
M215D215DgaCgaT11AY.120.2.10.000498
M215D215YGacTac11AY.1210.000135
M215D215DgaCgaT11AY.160.00038
M215D215DgaCgaT11AY.20.000356
M215D215YGacTac11AY.200.000039
M215D215DgaCgaT11AY.23.10.000417
M215D215del1gAcg-c11AY.250.000006
M215D215AgAcgCc11AY.250.000006
M215D215NGacAac11AY.250.000006
M215D215YGacTac11AY.260.000028
M215D215DgaCgaT11AY.290.000016
M215D215EgaCgaA11AY.30.00001
M215D215GgAcgGc11AY.30.00001
M215D215DgaCgaT11AY.340.000097
M215D215DgaCgaT11AY.370.000316
M215D215HGacCac11AY.40.000002
M215D215DgaCgaT11AY.400.000964
M215D215HGacCac11AY.410.000294
M215D215YGacTac11AY.420.00004
M215D215SGAcAGc11AY.440.000006
M215D215DgaCgaT11AY.450.000122
M215D215YGacTac11AY.460.000104
M215D215GgAcgGc11AY.460.000104
M215D215DgaCgaT11AY.46.60.000072
M215D215YGacTac11AY.470.000031
M215D215DgaCgaT11AY.480.000465
M215D215YGacTac11AY.50.000021
M215D215YGacTac11AY.520.000814
M215D215DgaCgaT11AY.570.000656
M215D215DgaCgaT11AY.60.000041
M215D215YGacTac11AY.60.000041
M215D215DgaCgaT11AY.620.000436
M215D215DgaCgaT11AY.630.000387
M215D215DgaCgaT11AY.700.000209
M215D215YGacTac11AY.740.000116
M215D215DgaCgaT11AY.740.000116
M215D215DgaCgaT11AY.75.10.00018
M215D215DgaCgaT11AY.760.004831
M215D215DgaCgaT11AY.880.000884
M215D215YGacTac11AY.9.20.000037
M215D215DgaCgaT11AY.91.10.004065
M215D215YGacTac11AY.99.20.000092
M215D215DgaCgaT11AZ.20.000821
M215D215YGacTac11B0.000128
M215D215GgACgGA11B0.000128
M215D215del2GAC--T11B.10.000009
M215D215del1Gac-ac11B.10.000009
M215D215EgaCgaA11B.10.000009
M215D215YGacTac11B.1.10.000018
M215D215VgAcgTc11B.1.10.000018
M215D215EgaCgaA11B.1.10.000018
M215D215HGacCac11B.1.10.000018
M215D215VgAcgTc11B.1.1.1940.00495
M215D215DgaCgaT11B.1.1.2140.000055
M215D215HGacCac11B.1.1.2840.000107
M215D215DgaCgaT11B.1.1.2840.000107
M215D215DgaCgaT11B.1.1.370.000193
M215D215DgaCgaT11B.1.1.500.000679
M215D215EgaCgaA11B.1.1.5190.00004
M215D215del2GAc--c11B.1.1.70.000001
M215D215DgaCgaT11B.1.1490.003425
M215D215EgaCgaG11B.1.1770.000013
M215D215GgAcgGc11B.1.177.210.000076
M215D215DgaCgaT11B.1.177.810.000189
M215D215EgaCgaA11B.1.20.000009
M215D215GgAcgGc11B.1.20.000009
M215D215EgaCgaG11B.1.2580.000067
M215D215DgaCgaT11B.1.2580.000067
M215D215XGaCTaA11B.1.258.110.000396
M215D215NGacAac11B.1.258.110.000396
M215D215DgaCgaT11B.1.258.120.007874
M215D215DgaCgaT11B.1.258.30.001675
M215D215YGacTac11B.1.258.40.003448
M215D215DgaCgaT11B.1.2790.000514
M215D215DgaCgaT11B.1.2840.013158
M215D215YGacTac11B.1.3010.005917
M215D215DgaCgaT11B.1.3110.000275
M215D215YGacTac11B.1.3510.00003
M215D215GgAcgGc11B.1.3510.00003
M215D215DgaCgaT11B.1.36.360.000602
M215D215DgaCgaT11B.1.3690.000285
M215D215DgaCgaT11B.1.3890.001002
M215D215GgAcgGc11B.1.4000.000429
M215D215DgaCgaT11B.1.4000.000429
M215D215DgaCgaT11B.1.4270.00005
M215D215YGacTac11B.1.4270.00005
M215D215HGacCac11B.1.4290.000024
M215D215DgaCgaT11B.1.4510.008197
M215D215YGacTac11B.1.4600.017857
M215D215GgAcgGc11B.1.4700.001404
M215D215YGacTac11B.1.5170.000427
M215D215DgaCgaT11B.1.5490.007194
M215D215DgaCgaT11B.1.5750.000303
M215D215DgaCgaT11B.1.5950.000261
M215D215DgaCgaT11B.1.5960.000087
M215D215YGacTac11B.1.5960.000087
M215D215YGacTac11B.1.6120.002653
M215D215NGacAac11B.1.617.20.000004
M215D215DgaCgaT11B.1.6210.000089
M215D215YGacTac11B.1.6230.000536
M215D215DgaCgaT11B.1.9.50.005682
M215D215DgaCgaT11B.400.000364
M215D215DgaCgaT11B.60.00091
M215D215DgaCgaT11C.370.000116
M215D215DgaCgaT11C.37.10.002618
M215D215YGacTac11P.1.100.000269
M215D215DgaCgaT11P.1.120.000484
M215D215YGacTac11P.1.170.000162
M215D215DgaCgaT11P.1.70.000319
M215D215GgAcgGc11P.20.000187
M215D215DgaCgaT11Q.80.000165
M215D215DgaCgaT11R.10.00009