CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = M : CodonNum = 214 & Codon = aCt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
M214S214TnonsynaGtaCt5858127162-27164

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
M214S214TaGtaCt5858All0.000011
M214S214TaGtaCt2121B.1.1.70.000019
M214S214TaGtaCt55AY.4.20.000108
M214S214TaGtaCt55AY.440.00003
M214S214TaGtaCt44AY.40.000006
M214S214TaGtaCt44B.1.177.810.000757
M214S214TaGtaCt22AY.250.000012
M214S214TaGtaCt22B.1.1770.000026
M214S214TaGtaCt22B.1.2210.000142
M214S214TaGtaCt22D.20.00015
M214S214TaGtaCt11AY.1000.000046
M214S214TaGtaCt11AY.1040.001984
M214S214TaGtaCt11AY.1130.000142
M214S214TaGtaCt11AY.350.000233
M214S214TaGtaCt11AY.430.000004
M214S214TaGtaCt11AY.470.000031
M214S214TaGtaCt11AY.610.000105
M214S214TaGtaCt11AY.7.10.000113
M214S214TaGtaCt11B.1.10.000018
M214S214TaGtaCt11B.1.177.170.000821
M214S214TaGtaCt11B.1.2430.00007

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.