CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = M : CodonNum = 211

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
M211S211SsyntcCtcT8858370.94576327153-27155
M211S211SsyntcCtcA885470.053107327153-27155
M211S211SsyntcCtcG88510.0011299427153-27155
M211S211deldelTCC---166166127153-27155
M211S211FnonsyntCctTc5858127153-27155
M211S211AnonsynTccGcc3131127153-27155
M211S211YnonsyntCctAc2929127153-27155
M211S211PnonsynTccCcc1717127153-27155
M211S211TnonsynTccAcc760.85714327153-27155
M211S211TnonsynTcCAcA710.14285727153-27155
M211S211del1deltCct-c640.66666727153-27155
M211S211del1delTcC-cA610.16666727153-27155
M211S211del1delTcc-cc610.16666727153-27155
M211S211RnonsynTCCCGG44127153-27155
M211S211NnonsynTCcAAc44127153-27155
M211S211XnonsyntCCtAA22127153-27155
M211S211KnonsynTCCAAG210.527153-27155
M211S211KnonsynTCCAAA210.527153-27155
M211S211CnonsyntCctGc11127153-27155
M211S211HnonsynTCcCAc11127153-27155

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
M211S211StcCtcT837885All0.00016
M211S211StcCtcA47885All0.000009
M211S211StcCtcG1885All0
M211S211StcCtcT209210B.1.1.70.000187
M211S211StcCtcA1210B.1.1.70.000001
M211S211delTCC---166166All0.000032
M211S211delTCC---147147B.1.177.210.011241
M211S211StcCtcT136136AY.30.001353
M211S211StcCtcT7878B.1.617.20.000294
M211S211StcCtcT3863AY.40.000059
M211S211StcCtcA2563AY.40.000039
M211S211FtCctTc5858All0.000011
M211S211StcCtcT5151C.36.30.028928
M211S211StcCtcT3637AY.390.00089
M211S211StcCtcA137AY.390.000025
M211S211StcCtcT2735B.1.20.000238
M211S211StcCtcA835B.1.20.00007
M211S211ATccGcc3131All0.000006
M211S211YtCctAc2929All0.000006
M211S211StcCtcT2525AY.250.00015
M211S211FtCctTc2323B.1.1.70.000021
M211S211StcCtcT2222AY.1140.005084
M211S211StcCtcT1718AY.440.000103
M211S211StcCtcA118AY.440.000006
M211S211StcCtcT1818B.1.5291
M211S211StcCtcT1818P.20.003359
M211S211PTccCcc1717All0.000003
M211S211delTCC---1616B.1.1.70.000014
M211S211StcCtcT1515AY.1190.00053
M211S211StcCtcT1414B.1.1.330.005892
M211S211ATccGcc1313B.1.1.70.000012
M211S211StcCtcT1111AY.430.000049
M211S211StcCtcT99AY.50.000186
M211S211StcCtcT88B.1.2430.000557
M211S211TTccAcc67All0.000001
M211S211TTcCAcA17All0
M211S211StcCtcT77AY.1030.000043
M211S211StcCtcT67AY.1170.000507
M211S211StcCtcA17AY.1170.000085
M211S211YtCctAc77B.10.000064
M211S211StcCtcA77B.1.258.210.054264
M211S211del1tCct-c46All0.000001
M211S211del1Tcc-cc16All0
M211S211del1TcC-cA16All0
M211S211YtCctAc66AY.1030.000037
M211S211FtCctTc66AY.40.000009
M211S211PTccCcc66B.1.1.70.000005
M211S211StcCtcT55B.1.10.000091
M211S211ATccGcc55B.1.2430.000348
M211S211YtCctAc440.222222
M211S211NTCcAAc44All0.000001
M211S211RTCCCGG44All0.000001
M211S211StcCtcT44AY.20.001425
M211S211StcCtcT44AY.740.000463
M211S211StcCtcT44AY.830.006897
M211S211FtCctTc44B.1.20.000035
M211S211TTccAcc230.111111
M211S211TTcCAcA130.055556
M211S211StcCtcT33AY.290.000047
M211S211RTCCCGG33B.10.000027
M211S211delTCC---33B.10.000027
M211S211StcCtcA13B.10.000009
M211S211StcCtcT13B.10.000009
M211S211StcCtcG13B.10.000009
M211S211StcCtcT33B.1.177.210.000229
M211S211StcCtcT33B.1.4290.000071
M211S211StcCtcT33B.1.5260.000071
M211S211ATccGcc33B.1.6370.000219
M211S211NTCcAAc220.111111
M211S211XtCCtAA22All0
M211S211KTCCAAG12All0
M211S211KTCCAAA12All0
M211S211StcCtcT22AY.230.000139
M211S211FtCctTc22AY.250.000012
M211S211PTccCcc22AY.250.000012
M211S211StcCtcT22AY.260.000057
M211S211FtCctTc22AY.30.00002
M211S211YtCctAc22AY.40.000003
M211S211StcCtcT22AY.4.30.001684
M211S211StcCtcT22AY.4.50.000215
M211S211StcCtcT22AY.460.000208
M211S211StcCtcT22AY.820.002714
M211S211StcCtcT22AY.9.10.000167
M211S211StcCtcT22B.1.1.3170.000823
M211S211StcCtcT22B.1.1.5190.000079
M211S211TTccAcc22B.1.1.70.000002
M211S211StcCtcT22B.1.1770.000026
M211S211StcCtcT22B.1.177.320.002699
M211S211StcCtcT22B.1.1990.008264
M211S211StcCtcT22B.1.2580.000133
M211S211NTCcAAc22B.1.466.20.000782
M211S211StcCtcT22B.1.5960.000174
M211S211YtCctAc22B.1.617.20.000008
M211S211FtCctTc22B.1.6280.000705
M211S211ATccGcc22B.60.00182
M211S211StcCtcT22P.10.000032
M211S211StcCtcA110.055556
M211S211PTccCcc110.055556
M211S211KTCCAAA110.055556
M211S211XtCCtAA110.055556
M211S211HTCcCAc110.055556
M211S211StcCtcT11A.230.010526
M211S211HTCcCAc11All0
M211S211CtCctGc11All0
M211S211del1tCct-c11AY.1030.000006
M211S211ATccGcc11AY.1030.000006
M211S211YtCctAc11AY.1050.000643
M211S211StcCtcT11AY.1160.000287
M211S211del1tCct-c11AY.1190.000035
M211S211FtCctTc11AY.130.000161
M211S211StcCtcA11AY.240.000431
M211S211YtCctAc11AY.260.000028
M211S211StcCtcT11AY.270.000065
M211S211FtCctTc11AY.290.000016
M211S211ATccGcc11AY.30.00001
M211S211StcCtcT11AY.3.10.000085
M211S211StcCtcT11AY.340.000097
M211S211StcCtcT11AY.350.000233
M211S211FtCctTc11AY.390.000025
M211S211PTccCcc11AY.39.10.00004
M211S211TTccAcc11AY.40.000002
M211S211PTccCcc11AY.40.000002
M211S211ATccGcc11AY.40.000002
M211S211StcCtcT11AY.410.000294
M211S211CtCctGc11AY.430.000004
M211S211YtCctAc11AY.430.000004
M211S211PTccCcc11AY.440.000006
M211S211YtCctAc11AY.440.000006
M211S211del1tCct-c11AY.440.000006
M211S211FtCctTc11AY.440.000006
M211S211StcCtcT11AY.470.000031
M211S211ATccGcc11AY.470.000031
M211S211FtCctTc11AY.470.000031
M211S211StcCtcT11AY.5.40.000277
M211S211YtCctAc11AY.520.000814
M211S211FtCctTc11AY.580.000907
M211S211StcCtcT11AY.60.000041
M211S211StcCtcT11AY.610.000105
M211S211FtCctTc11AY.750.000056
M211S211FtCctTc11AY.75.10.00018
M211S211FtCctTc11AY.820.001357
M211S211StcCtcT11AY.90.000068
M211S211StcCtcT11AY.920.000287
M211S211StcCtcT11AY.98.10.000048
M211S211StcCtcT11AY.99.20.000092
M211S211TTccAcc11B0.000128
M211S211StcCtcT11B0.000128
M211S211YtCctAc11B0.000128
M211S211FtCctTc11B.10.000009
M211S211XtCCtAA11B.10.000009
M211S211PTccCcc11B.10.000009
M211S211StcCtcT11B.1.1.1700.001247
M211S211ATccGcc11B.1.1.1760.000439
M211S211PTccCcc11B.1.1.2140.000055
M211S211FtCctTc11B.1.1.2140.000055
M211S211RTCCCGG11B.1.1.2650.003155
M211S211ATccGcc11B.1.1.3180.000302
M211S211PTccCcc11B.1.1.3180.000302
M211S211StcCtcT11B.1.1.440.00241
M211S211StcCtcT11B.1.1.4410.05
M211S211StcCtcT11B.1.1.500.000679
M211S211del1TcC-cA11B.1.1.70.000001
M211S211ATccGcc11B.1.1.830.00271
M211S211FtCctTc11B.1.1600.000031
M211S211ATccGcc11B.1.1770.000013
M211S211FtCctTc11B.1.177.210.000076
M211S211FtCctTc11B.1.2100.002132
M211S211StcCtcT11B.1.2150.009615
M211S211FtCctTc11B.1.2210.000071
M211S211StcCtcT11B.1.2340.000132
M211S211KTCCAAG11B.1.258.110.000396
M211S211StcCtcT11B.1.258.110.000396
M211S211YtCctAc11B.1.3010.005917
M211S211PTccCcc11B.1.3110.000275
M211S211FtCctTc11B.1.351.20.000303
M211S211YtCctAc11B.1.360.000146
M211S211FtCctTc11B.1.36.180.00042
M211S211del1Tcc-cc11B.1.3960.000706
M211S211StcCtcT11B.1.466.20.000391
M211S211StcCtcT11B.1.5250.000113
M211S211StcCtcT11B.1.5300.007143
M211S211PTccCcc11B.1.617.30.002985
M211S211StcCtcT11B.1.6210.000089
M211S211del1tCct-c11B.1.700.02439
M211S211StcCtcT11B.40.002208
M211S211StcCtcT11B.6.60.000889
M211S211StcCtcT11C.370.000116
M211S211StcCtcT11C.400.027778
M211S211FtCctTc11P.1.120.000484
M211S211StcCtcT11P.60.003145
M211S211FtCctTc11P.70.004367