CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = M : CodonNum = 208

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
M	208	T208I		nonsyn	aCa	aTa	2199	2199	1	27144-27146
M	208	T208T		syn	acA	acT	621	422	0.679549	27144-27146
M	208	T208T		syn	acA	acG	621	180	0.289855	27144-27146
M	208	T208T		syn	acA	acC	621	19	0.0305958	27144-27146
M	208	T208del		del	ACA	---	174	174	1	27144-27146
M	208	T208K		nonsyn	aCa	aAa	103	103	1	27144-27146
M	208	T208R		nonsyn	aCa	aGa	44	44	1	27144-27146
M	208	T208S		nonsyn	Aca	Tca	44	44	1	27144-27146
M	208	T208A		nonsyn	Aca	Gca	35	35	1	27144-27146
M	208	T208P		nonsyn	Aca	Cca	11	11	1	27144-27146
M	208	T208L		nonsyn	ACA	CTT	3	1	0.333333	27144-27146
M	208	T208L		nonsyn	ACA	CTG	3	1	0.333333	27144-27146
M	208	T208L		nonsyn	ACa	TTa	3	1	0.333333	27144-27146
M	208	T208Y		nonsyn	ACA	TAC	1	1	1	27144-27146
M	208	T208X		nonsyn	ACA	TAG	1	1	1	27144-27146
M	208	T208Q		nonsyn	ACa	CAa	1	1	1	27144-27146

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
M	208	T208I	aCa	aTa	2199	2199	All	0.000421
M	208	T208T	acA	acT	422	621	All	0.000081
M	208	T208T	acA	acG	180	621	All	0.000034
M	208	T208T	acA	acC	19	621	All	0.000004
M	208	T208I	aCa	aTa	386	386	B.1.1.7	0.000346
M	208	T208T	acA	acT	240	240	B.1.221.4	1
M	208	T208I	aCa	aTa	190	190	B.1.517.1	1
M	208	T208del	ACA	---	174	174	All	0.000033
M	208	T208I	aCa	aTa	164	164	AY.4	0.000255
M	208	T208del	ACA	---	149	149	B.1.177.21	0.011394
M	208	T208I	aCa	aTa	129	129	AY.29	0.002035
M	208	T208I	aCa	aTa	105	105	AY.43	0.000465
M	208	T208K	aCa	aAa	103	103	All	0.00002
M	208	T208T	acA	acT	54	97	B.1.1.7	0.000048
M	208	T208T	acA	acG	43	97	B.1.1.7	0.000038
M	208	T208I	aCa	aTa	93	93	B.1.617.2	0.00035
M	208	T208I	aCa	aTa	87	87	AY.103	0.00054
M	208	T208I	aCa	aTa	66	66	B.1.1.519	0.002621
M	208	T208I	aCa	aTa	64	64	B.1.2	0.000564
M	208	T208T	acA	acG	48	62	AY.4	0.000075
M	208	T208T	acA	acT	14	62	AY.4	0.000022
M	208	T208I	aCa	aTa	55	55	AY.3	0.000547
M	208	T208I	aCa	aTa	49	49	AY.5	0.001012
M	208	T208K	aCa	aAa	48	48	AY.102	0.001273
M	208	T208I	aCa	aTa	46	46	AY.44	0.00028
M	208	T208S	Aca	Tca	44	44	All	0.000008
M	208	T208R	aCa	aGa	44	44	All	0.000008
M	208	T208I	aCa	aTa	43	43	AY.25	0.000259
M	208	T208I	aCa	aTa	42	42	B.1.177	0.000553
M	208	T208I	aCa	aTa	40	40	AY.7.1	0.004508
M	208	T208T	acA	acT	37	37	B.1.177	0.000487
M	208	T208I	aCa	aTa	36	36	B.1.351	0.00107
M	208	T208A	Aca	Gca	35	35	All	0.000007
M	208	T208I	aCa	aTa	31	31	B.1	0.000284
M	208	T208I	aCa	aTa	28	28	B.1.526	0.000658
M	208	T208I	aCa	aTa	27	27	AY.26	0.000764
M	208	T208T	acA	acG	16	22	B.1.617.2	0.00006
M	208	T208T	acA	acT	6	22	B.1.617.2	0.000023
M	208	T208I	aCa	aTa	19	19	AY.4.2	0.000412
M	208	T208del	ACA	---	19	19	B.1.1.7	0.000017
M	208	T208T	acA	acG	10	19	B.1.2	0.000088
M	208	T208T	acA	acT	5	19	B.1.2	0.000044
M	208	T208T	acA	acC	4	19	B.1.2	0.000035
M	208	T208I	aCa	aTa	18	18	AY.47	0.00056
M	208	T208I	aCa	aTa	16	16	AY.102	0.000424
M	208	T208R	aCa	aGa	15	15	AY.4	0.000023
M	208	T208I	aCa	aTa	15	15	AY.42	0.000603
M	208	T208T	acA	acT	13	15	AY.43	0.000058
M	208	T208T	acA	acG	2	15	AY.43	0.000009
M	208	T208I	aCa	aTa	15	15	B.1.1	0.000272
M	208	T208K	aCa	aAa	14	14	AY.46.4	0.002303
M	208	T208I	aCa	aTa	14	14	B.1.221	0.000994
M	208	T208T	acA	acG	12	13	AY.25	0.000072
M	208	T208T	acA	acC	1	13	AY.25	0.000006
M	208	T208I	aCa	aTa	12	12	AY.100	0.000552
M	208	T208S	Aca	Tca	12	12	B.1.1.7	0.000011
M	208	T208I	aCa	aTa	12	12	B.1.575	0.003641
M	208	T208I	aCa	aTa	12	12	P.1	0.000189
M	208	T208P	Aca	Cca	11	11	All	0.000002
M	208	T208T	acA	acC	7	11	AY.44	0.000043
M	208	T208T	acA	acG	3	11	AY.44	0.000018
M	208	T208T	acA	acT	1	11	AY.44	0.000006
M	208	T208I	aCa	aTa	11	11	AY.98	0.000869
M	208	T208K	aCa	aAa	11	11	B.1.617.2	0.000041
M	208	T208I	aCa	aTa	10	10	AY.117	0.000845
M	208	T208I	aCa	aTa	10	10	B.1.427	0.000505
M	208	T208S	Aca	Tca	10	10	B.1.429	0.000235
M	208	T208T	acA	acG	7	10	P.1	0.00011
M	208	T208T	acA	acC	2	10	P.1	0.000032
M	208	T208T	acA	acT	1	10	P.1	0.000016
M	208	T208I	aCa	aTa	9	9	AY.119	0.000318
M	208	T208T	acA	acG	9	9	AY.120	0.000335
M	208	T208I	aCa	aTa	9	9	AY.35	0.002097
M	208	T208A	Aca	Gca	9	9	B.1.1.7	0.000008
M	208	T208P	Aca	Cca	9	9	B.1.1.7	0.000008
M	208	T208I	aCa	aTa	9	9	B.1.621	0.000797
M	208	T208I	aCa	aTa	8	8	AY.39	0.000198
M	208	T208I	aCa	aTa	8	8	AY.7.2	0.004474
M	208	T208R	aCa	aGa	8	8	B.1.1.7	0.000007
M	208	T208I	aCa	aTa	8	8	B.1.637	0.000585
M	208	T208I	aCa	aTa	7	7	AY.20	0.000272
M	208	T208I	aCa	aTa	6	6	AY.120	0.000223
M	208	T208I	aCa	aTa	6	6	AY.23	0.000418
M	208	T208T	acA	acG	6	6	AY.78	0.009245
M	208	T208I	aCa	aTa	6	6	AY.9.2	0.00022
M	208	T208T	acA	acT	6	6	B.1.199	0.024793
M	208	T208S	Aca	Tca	6	6	B.1.526	0.000141
M	208	T208I	aCa	aTa	6	6	Q.1	0.000758
M	208	T208I	aCa	aTa	6	6	R.1	0.00054
M	208	T208I	aCa	aTa	5	5	AY.111	0.000916
M	208	T208I	aCa	aTa	5	5	AY.46.6	0.000361
M	208	T208I	aCa	aTa	5	5	AY.9	0.000338
M	208	T208I	aCa	aTa	5	5	AY.98.1	0.000242
M	208	T208I	aCa	aTa	5	5	AY.99.2	0.000461
M	208	T208I	aCa	aTa	5	5	B.1.1.10	0.005574
M	208	T208I	aCa	aTa	5	5	B.1.1.316	0.004625
M	208	T208K	aCa	aAa	5	5	B.1.1.7	0.000004
M	208	T208I	aCa	aTa	5	5	B.1.177.65	0.003327
M	208	T208A	Aca	Gca	5	5	B.1.258	0.000333
M	208	T208I	aCa	aTa	5	5	B.1.429	0.000118
M	208	T208R	aCa	aGa	5	5	B.1.617.2	0.000019
M	208	T208I	aCa	aTa	5	5	D.2	0.000375
M	208	T208I	aCa	aTa	5	5	P.1.14	0.000239
M	208	T208T	acA	acT	3	4	AY.103	0.000019
M	208	T208T	acA	acG	1	4	AY.103	0.000006
M	208	T208T	acA	acT	4	4	AY.12	0.001264
M	208	T208I	aCa	aTa	4	4	AY.121	0.000541
M	208	T208K	aCa	aAa	4	4	AY.44	0.000024
M	208	T208I	aCa	aTa	4	4	AY.58	0.00363
M	208	T208I	aCa	aTa	4	4	AY.74	0.000463
M	208	T208del	ACA	---	4	4	B.1	0.000037
M	208	T208T	acA	acG	2	4	B.1	0.000018
M	208	T208T	acA	acT	2	4	B.1	0.000018
M	208	T208T	acA	acG	2	4	B.1.1	0.000036
M	208	T208T	acA	acT	2	4	B.1.1	0.000036
M	208	T208I	aCa	aTa	4	4	B.1.1.141	0.008048
M	208	T208I	aCa	aTa	4	4	B.1.258	0.000266
M	208	T208A	Aca	Gca	4	4	B.1.619	0.003484
M	208	T208L	ACA	CTG	1	3	All	0
M	208	T208L	ACA	CTT	1	3	All	0
M	208	T208L	ACa	TTa	1	3	All	0
M	208	T208T	acA	acG	3	3	AY.100	0.000138
M	208	T208K	aCa	aAa	3	3	AY.113	0.000427
M	208	T208I	aCa	aTa	3	3	AY.118	0.000188
M	208	T208T	acA	acG	2	3	AY.23	0.000139
M	208	T208T	acA	acT	1	3	AY.23	0.00007
M	208	T208R	aCa	aGa	3	3	AY.25	0.000018
M	208	T208I	aCa	aTa	3	3	AY.29.1	0.000662
M	208	T208I	aCa	aTa	3	3	AY.33	0.0002
M	208	T208I	aCa	aTa	3	3	AY.36	0.000445
M	208	T208I	aCa	aTa	3	3	B.1.1.214	0.000166
M	208	T208I	aCa	aTa	3	3	B.1.1.347	0.054545
M	208	T208I	aCa	aTa	3	3	B.1.1.486	0.004732
M	208	T208I	aCa	aTa	3	3	B.1.177.7	0.000495
M	208	T208S	Aca	Tca	3	3	B.1.2	0.000026
M	208	T208I	aCa	aTa	3	3	B.1.36	0.000438
M	208	T208K	aCa	aAa	3	3	B.1.466.2	0.001174
M	208	T208T	acA	acT	3	3	B.1.525	0.000339
M	208	T208I	aCa	aTa	3	3	B.1.525	0.000339
M	208	T208I	aCa	aTa	3	3	B.1.626	0.017143
M	208	T208I	aCa	aTa	3	3	P.2	0.00056
M	208	T208I	aCa	aTa	2	2	A.27	0.003311
M	208	T208I	aCa	aTa	2	2	AD.2	0.000438
M	208	T208T	acA	acC	2	2	AY.106	0.00067
M	208	T208I	aCa	aTa	2	2	AY.2	0.000712
M	208	T208T	acA	acT	2	2	AY.20	0.000078
M	208	T208T	acA	acT	1	2	AY.26	0.000028
M	208	T208T	acA	acG	1	2	AY.26	0.000028
M	208	T208A	Aca	Gca	2	2	AY.27	0.000129
M	208	T208A	Aca	Gca	2	2	AY.29	0.000032
M	208	T208I	aCa	aTa	2	2	AY.34	0.000194
M	208	T208K	aCa	aAa	2	2	AY.39	0.000049
M	208	T208I	aCa	aTa	2	2	AY.39.1	0.000079
M	208	T208A	Aca	Gca	2	2	AY.4	0.000003
M	208	T208S	Aca	Tca	2	2	AY.4	0.000003
M	208	T208K	aCa	aAa	2	2	AY.4	0.000003
M	208	T208I	aCa	aTa	2	2	AY.45	0.000243
M	208	T208I	aCa	aTa	2	2	AY.46.4	0.000329
M	208	T208I	aCa	aTa	2	2	AY.48	0.00093
M	208	T208I	aCa	aTa	2	2	AY.5.3	0.000675
M	208	T208I	aCa	aTa	2	2	AY.54	0.000191
M	208	T208I	aCa	aTa	2	2	AY.62	0.000871
M	208	T208I	aCa	aTa	2	2	AY.70	0.000417
M	208	T208T	acA	acG	1	2	AY.84	0.000437
M	208	T208T	acA	acT	1	2	AY.84	0.000437
M	208	T208I	aCa	aTa	2	2	AY.85	0.000854
M	208	T208T	acA	acT	2	2	AY.98.1	0.000097
M	208	T208T	acA	acT	1	2	B	0.000128
M	208	T208T	acA	acG	1	2	B	0.000128
M	208	T208I	aCa	aTa	2	2	B.1.1.222	0.000408
M	208	T208T	acA	acT	2	2	B.1.1.326	0.003521
M	208	T208I	aCa	aTa	2	2	B.1.1.416	0.00181
M	208	T208I	aCa	aTa	2	2	B.1.160	0.000062
M	208	T208I	aCa	aTa	2	2	B.1.177.12	0.000303
M	208	T208I	aCa	aTa	2	2	B.1.210	0.004264
M	208	T208I	aCa	aTa	2	2	B.1.241	0.001623
M	208	T208T	acA	acG	2	2	B.1.258	0.000133
M	208	T208I	aCa	aTa	2	2	B.1.305	0.004301
M	208	T208T	acA	acG	2	2	B.1.36.10	0.009569
M	208	T208I	aCa	aTa	2	2	B.1.36.10	0.009569
M	208	T208I	aCa	aTa	2	2	B.1.413	0.008511
M	208	T208T	acA	acT	2	2	B.1.526	0.000047
M	208	T208I	aCa	aTa	2	2	B.1.551	0.002581
M	208	T208I	aCa	aTa	2	2	B.1.564	0.000852
M	208	T208I	aCa	aTa	2	2	B.1.595	0.000522
M	208	T208I	aCa	aTa	2	2	B.1.595.4	0.014599
M	208	T208T	acA	acT	2	2	B.1.617.1	0.000258
M	208	T208I	aCa	aTa	2	2	P.1.10	0.000539
M	208	T208S	Aca	Tca	2	2	P.1.14	0.000096
M	208	T208I	aCa	aTa	2	2	P.1.15	0.000465
M	208	T208I	aCa	aTa	2	2	P.1.17	0.000324
M	208	T208R	aCa	aGa	2	2	P.1.17	0.000324
M	208	T208I	aCa	aTa	2	2	P.1.4	0.001953
M	208	T208T	acA	acC	2	2	P.2	0.000373
M	208	T208I	aCa	aTa	2	2	Q.3	0.00029
M	208	T208K	aCa	aAa	1	1		0.055556
M	208	T208P	Aca	Cca	1	1		0.055556
M	208	T208Q	ACa	CAa	1	1		0.055556
M	208	T208del	ACA	---	1	1	A	0.000387
M	208	T208I	aCa	aTa	1	1	A	0.000387
M	208	T208T	acA	acT	1	1	A.1	0.000282
M	208	T208I	aCa	aTa	1	1	A.2.2	0.001689
M	208	T208T	acA	acT	1	1	A.2.5	0.000499
M	208	T208I	aCa	aTa	1	1	A.2.5.2	0.001572
M	208	T208I	aCa	aTa	1	1	A.21	0.00277
M	208	T208T	acA	acG	1	1	AD.2	0.000219
M	208	T208Q	ACa	CAa	1	1	All	0
M	208	T208Y	ACA	TAC	1	1	All	0
M	208	T208X	ACA	TAG	1	1	All	0
M	208	T208I	aCa	aTa	1	1	AU.3	0.00211
M	208	T208T	acA	acG	1	1	AY.102	0.000027
M	208	T208R	aCa	aGa	1	1	AY.107	0.000466
M	208	T208I	aCa	aTa	1	1	AY.109	0.00074
M	208	T208R	aCa	aGa	1	1	AY.111	0.000183
M	208	T208I	aCa	aTa	1	1	AY.113	0.000142
M	208	T208I	aCa	aTa	1	1	AY.114	0.000231
M	208	T208I	aCa	aTa	1	1	AY.116	0.000287
M	208	T208I	aCa	aTa	1	1	AY.12	0.000316
M	208	T208S	Aca	Tca	1	1	AY.120	0.000037
M	208	T208I	aCa	aTa	1	1	AY.120.1	0.000321
M	208	T208I	aCa	aTa	1	1	AY.14	0.000088
M	208	T208I	aCa	aTa	1	1	AY.16	0.00038
M	208	T208A	Aca	Gca	1	1	AY.19	0.00114
M	208	T208K	aCa	aAa	1	1	AY.20	0.000039
M	208	T208S	Aca	Tca	1	1	AY.23	0.00007
M	208	T208L	ACA	CTG	1	1	AY.25	0.000006
M	208	T208A	Aca	Gca	1	1	AY.25	0.000006
M	208	T208K	aCa	aAa	1	1	AY.26	0.000028
M	208	T208S	Aca	Tca	1	1	AY.26	0.000028
M	208	T208R	aCa	aGa	1	1	AY.27	0.000065
M	208	T208K	aCa	aAa	1	1	AY.3	0.00001
M	208	T208A	Aca	Gca	1	1	AY.3.1	0.000085
M	208	T208T	acA	acT	1	1	AY.3.1	0.000085
M	208	T208T	acA	acG	1	1	AY.39	0.000025
M	208	T208I	aCa	aTa	1	1	AY.39.2	0.001541
M	208	T208del	ACA	---	1	1	AY.4	0.000002
M	208	T208I	aCa	aTa	1	1	AY.41	0.000294
M	208	T208A	Aca	Gca	1	1	AY.42	0.00004
M	208	T208R	aCa	aGa	1	1	AY.43	0.000004
M	208	T208S	Aca	Tca	1	1	AY.44	0.000006
M	208	T208X	ACA	TAG	1	1	AY.44	0.000006
M	208	T208I	aCa	aTa	1	1	AY.46.2	0.000635
M	208	T208T	acA	acT	1	1	AY.47	0.000031
M	208	T208P	Aca	Cca	1	1	AY.47	0.000031
M	208	T208T	acA	acT	1	1	AY.5	0.000021
M	208	T208R	aCa	aGa	1	1	AY.50	0.000799
M	208	T208I	aCa	aTa	1	1	AY.56	0.001605
M	208	T208I	aCa	aTa	1	1	AY.59	0.00053
M	208	T208I	aCa	aTa	1	1	AY.6	0.000041
M	208	T208I	aCa	aTa	1	1	AY.61	0.000105
M	208	T208I	aCa	aTa	1	1	AY.64	0.000595
M	208	T208S	Aca	Tca	1	1	AY.67	0.000464
M	208	T208I	aCa	aTa	1	1	AY.73	0.000665
M	208	T208I	aCa	aTa	1	1	AY.75	0.000056
M	208	T208I	aCa	aTa	1	1	AY.75.1	0.00018
M	208	T208I	aCa	aTa	1	1	AY.79	0.001211
M	208	T208L	ACa	TTa	1	1	AY.82	0.001357
M	208	T208I	aCa	aTa	1	1	AY.89	0.004902
M	208	T208I	aCa	aTa	1	1	AY.9.1	0.000084
M	208	T208K	aCa	aAa	1	1	AY.9.1	0.000084
M	208	T208I	aCa	aTa	1	1	AY.92	0.000287
M	208	T208S	Aca	Tca	1	1	AY.96	0.002075
M	208	T208K	aCa	aAa	1	1	B	0.000128
M	208	T208R	aCa	aGa	1	1	B.1	0.000009
M	208	T208K	aCa	aAa	1	1	B.1	0.000009
M	208	T208K	aCa	aAa	1	1	B.1.1	0.000018
M	208	T208A	Aca	Gca	1	1	B.1.1	0.000018
M	208	T208I	aCa	aTa	1	1	B.1.1.186	0.003436
M	208	T208T	acA	acT	1	1	B.1.1.198	0.001468
M	208	T208I	aCa	aTa	1	1	B.1.1.226	0.005814
M	208	T208I	aCa	aTa	1	1	B.1.1.231	0.003096
M	208	T208I	aCa	aTa	1	1	B.1.1.240	0.004695
M	208	T208I	aCa	aTa	1	1	B.1.1.25	0.000569
M	208	T208I	aCa	aTa	1	1	B.1.1.270	0.010309
M	208	T208I	aCa	aTa	1	1	B.1.1.273	0.006757
M	208	T208I	aCa	aTa	1	1	B.1.1.277	0.000759
M	208	T208I	aCa	aTa	1	1	B.1.1.284	0.000107
M	208	T208I	aCa	aTa	1	1	B.1.1.311	0.000358
M	208	T208I	aCa	aTa	1	1	B.1.1.317	0.000412
M	208	T208I	aCa	aTa	1	1	B.1.1.318	0.000302
M	208	T208I	aCa	aTa	1	1	B.1.1.33	0.000421
M	208	T208I	aCa	aTa	1	1	B.1.1.332	0.03125
M	208	T208R	aCa	aGa	1	1	B.1.1.335	0.012987
M	208	T208T	acA	acT	1	1	B.1.1.37	0.000193
M	208	T208T	acA	acG	1	1	B.1.1.389	0.006061
M	208	T208A	Aca	Gca	1	1	B.1.1.48	0.002874
M	208	T208I	aCa	aTa	1	1	B.1.1.50	0.000679
M	208	T208A	Aca	Gca	1	1	B.1.1.519	0.00004
M	208	T208T	acA	acT	1	1	B.1.1.519	0.00004
M	208	T208T	acA	acG	1	1	B.1.1.63	0.000386
M	208	T208I	aCa	aTa	1	1	B.1.1.97	0.029412
M	208	T208I	aCa	aTa	1	1	B.1.110.3	0.000718
M	208	T208I	aCa	aTa	1	1	B.1.139	0.000733
M	208	T208I	aCa	aTa	1	1	B.1.147	0.000756
M	208	T208I	aCa	aTa	1	1	B.1.157	0.002985
M	208	T208R	aCa	aGa	1	1	B.1.160	0.000031
M	208	T208R	aCa	aGa	1	1	B.1.160.22	0.006757
M	208	T208S	Aca	Tca	1	1	B.1.177	0.000013
M	208	T208R	aCa	aGa	1	1	B.1.177	0.000013
M	208	T208A	Aca	Gca	1	1	B.1.177	0.000013
M	208	T208I	aCa	aTa	1	1	B.1.177.10	0.000878
M	208	T208I	aCa	aTa	1	1	B.1.177.17	0.000821
M	208	T208I	aCa	aTa	1	1	B.1.177.21	0.000076
M	208	T208I	aCa	aTa	1	1	B.1.177.30	0.002513
M	208	T208I	aCa	aTa	1	1	B.1.177.58	0.001332
M	208	T208T	acA	acT	1	1	B.1.177.60	0.000218
M	208	T208I	aCa	aTa	1	1	B.1.177.63	0.002703
M	208	T208I	aCa	aTa	1	1	B.1.177.68	0.015152
M	208	T208T	acA	acT	1	1	B.1.177.7	0.000165
M	208	T208A	Aca	Gca	1	1	B.1.177.75	0.001041
M	208	T208I	aCa	aTa	1	1	B.1.177.75	0.001041
M	208	T208I	aCa	aTa	1	1	B.1.177.77	0.000726
M	208	T208I	aCa	aTa	1	1	B.1.177.86	0.000183
M	208	T208I	aCa	aTa	1	1	B.1.179	0.003759
M	208	T208I	aCa	aTa	1	1	B.1.214.2	0.0006
M	208	T208K	aCa	aAa	1	1	B.1.221	0.000071
M	208	T208I	aCa	aTa	1	1	B.1.232	0.000537
M	208	T208T	acA	acG	1	1	B.1.234	0.000132
M	208	T208K	aCa	aAa	1	1	B.1.240	0.000216
M	208	T208I	aCa	aTa	1	1	B.1.243	0.00007
M	208	T208I	aCa	aTa	1	1	B.1.252	0.006623
M	208	T208I	aCa	aTa	1	1	B.1.258.7	0.001912
M	208	T208I	aCa	aTa	1	1	B.1.258.9	0.005
M	208	T208I	aCa	aTa	1	1	B.1.264	0.012346
M	208	T208I	aCa	aTa	1	1	B.1.279	0.000514
M	208	T208S	Aca	Tca	1	1	B.1.311	0.000275
M	208	T208I	aCa	aTa	1	1	B.1.311	0.000275
M	208	T208I	aCa	aTa	1	1	B.1.320	0.001245
M	208	T208I	aCa	aTa	1	1	B.1.325	0.006897
M	208	T208I	aCa	aTa	1	1	B.1.333	0.010526
M	208	T208I	aCa	aTa	1	1	B.1.349	0.000715
M	208	T208I	aCa	aTa	1	1	B.1.350	0.002933
M	208	T208R	aCa	aGa	1	1	B.1.351	0.00003
M	208	T208I	aCa	aTa	1	1	B.1.351.2	0.000303
M	208	T208I	aCa	aTa	1	1	B.1.36.18	0.00042
M	208	T208I	aCa	aTa	1	1	B.1.360	0.012658
M	208	T208I	aCa	aTa	1	1	B.1.362	0.001541
M	208	T208I	aCa	aTa	1	1	B.1.408	0.00369
M	208	T208L	ACA	CTT	1	1	B.1.429	0.000024
M	208	T208T	acA	acT	1	1	B.1.429	0.000024
M	208	T208I	aCa	aTa	1	1	B.1.436	0.001029
M	208	T208I	aCa	aTa	1	1	B.1.438.1	0.000107
M	208	T208T	acA	acC	1	1	B.1.466.2	0.000391
M	208	T208I	aCa	aTa	1	1	B.1.497	0.000315
M	208	T208I	aCa	aTa	1	1	B.1.509	0.000866
M	208	T208T	acA	acT	1	1	B.1.516	0.001957
M	208	T208I	aCa	aTa	1	1	B.1.517	0.000427
M	208	T208I	aCa	aTa	1	1	B.1.561	0.000397
M	208	T208I	aCa	aTa	1	1	B.1.568	0.001111
M	208	T208T	acA	acT	1	1	B.1.596	0.000087
M	208	T208I	aCa	aTa	1	1	B.1.609	0.000479
M	208	T208I	aCa	aTa	1	1	B.1.617.1	0.000129
M	208	T208A	Aca	Gca	1	1	B.1.617.2	0.000004
M	208	T208Y	ACA	TAC	1	1	B.1.617.2	0.000004
M	208	T208S	Aca	Tca	1	1	B.1.617.2	0.000004
M	208	T208T	acA	acT	1	1	B.1.618	0.004032
M	208	T208T	acA	acT	1	1	B.1.621	0.000089
M	208	T208I	aCa	aTa	1	1	B.1.628	0.000352
M	208	T208K	aCa	aAa	1	1	B.1.637	0.000073
M	208	T208I	aCa	aTa	1	1	B.1.81	0.021277
M	208	T208I	aCa	aTa	1	1	B.1.93	0.000934
M	208	T208I	aCa	aTa	1	1	B.3.1	0.001658
M	208	T208I	aCa	aTa	1	1	B.4.8	0.071429
M	208	T208I	aCa	aTa	1	1	C.37	0.000116
M	208	T208T	acA	acT	1	1	D.2	0.000075
M	208	T208A	Aca	Gca	1	1	P.1	0.000016
M	208	T208T	acA	acT	1	1	P.1.15	0.000232
M	208	T208T	acA	acG	1	1	Q.8	0.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.