CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = M : CodonNum = 203

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
M203N203NsynaaCaaT72137213127129-27131
M203N203deldelAAC---173173127129-27131
M203N203TnonsynaAcaCc970.77777827129-27131
M203N203KnonsynaaCaaA960.66666727129-27131
M203N203KnonsynaaCaaG930.33333327129-27131
M203N203TnonsynaACaCT920.22222227129-27131
M203N203SnonsynaAcaGc77127129-27131
M203N203InonsynaAcaTc55127129-27131
M203N203YnonsynAacTac44127129-27131
M203N203GnonsynAAcGGc22127129-27131
M203N203del1delAac-ac210.527129-27131
M203N203del1delAaC-aT210.527129-27131
M203N203DnonsynAacGac11127129-27131
M203N203RnonsynaACaGA11127129-27131
M203N203WnonsynAACTGG11127129-27131
M203N203HnonsynAacCac11127129-27131

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
M203N203NaaCaaT72137213All0.00138
M203N203NaaCaaT978978AY.580.887477
M203N203NaaCaaT745745B.1.1.70.000667
M203N203NaaCaaT494494AY.40.000769
M203N203NaaCaaT422422B.1.617.20.001589
M203N203NaaCaaT351351B.1.20.003091
M203N203NaaCaaT309309B.1.1600.009637
M203N203NaaCaaT292292B.10.002675
M203N203NaaCaaT266266AY.30.002646
M203N203NaaCaaT247247B.1.1770.003252
M203N203NaaCaaT193193B.1.160.150.955446
M203N203delAAC---173173All0.000033
M203N203NaaCaaT168168AY.390.004152
M203N203NaaCaaT156156AY.430.000691
M203N203NaaCaaT152152AY.4.30.127946
M203N203NaaCaaT151151B.1.258.140.148039
M203N203delAAC---147147B.1.177.210.011241
M203N203NaaCaaT135135AY.1070.062908
M203N203NaaCaaT120120AY.250.000722
M203N203NaaCaaT110110AY.9.20.00404
M203N203NaaCaaT105105B.1.177.860.019263
M203N203NaaCaaT102102AY.1030.000633
M203N203NaaCaaT9898AY.440.000597
M203N203NaaCaaT8989B.1.6370.006503
M203N203NaaCaaT7878B.1.2430.005428
M203N203NaaCaaT6868B.1.36.360.040939
M203N203NaaCaaT6262B.1.5260.001457
M203N203NaaCaaT5050C.370.005803
M203N203NaaCaaT4646B.1.1.580.247312
M203N203NaaCaaT3939AY.4.20.000846
M203N203NaaCaaT3939B.1.10.000707
M203N203NaaCaaT3838B.1.258.30.063652
M203N203NaaCaaT3535B.1.3510.00104
M203N203NaaCaaT3535B.1.4290.000824
M203N203NaaCaaT3232B.1.3990.061896
M203N203NaaCaaT2727AY.200.001049
M203N203NaaCaaT2727AY.750.001513
M203N203NaaCaaT2727B.1.6210.00239
M203N203NaaCaaT2727P.10.000425
M203N203NaaCaaT2424AY.98.10.001162
M203N203NaaCaaT2424B.1.177.580.031957
M203N203NaaCaaT2323AY.1180.001441
M203N203NaaCaaT2222AY.4.50.002365
M203N203NaaCaaT2121AY.470.000653
M203N203NaaCaaT2020AY.50.000413
M203N203delAAC---1818B.1.1.70.000016
M203N203NaaCaaT1616AY.300.006332
M203N203NaaCaaT1616B.1.4270.000808
M203N203NaaCaaT1616C.1.20.068085
M203N203NaaCaaT1515B.1.177.440.007784
M203N203NaaCaaT1515B.1.5820.00736
M203N203NaaCaaT1515B.1.617.10.001934
M203N203NaaCaaT1414B.1.1.1890.02118
M203N203NaaCaaT1313AY.116.10.004049
M203N203NaaCaaT1313AY.75.10.002344
M203N203NaaCaaT1313B.1.177.810.002461
M203N203NaaCaaT1313B.1.5960.001133
M203N203NaaCaaT1212AY.1010.005885
M203N203NaaCaaT1212AY.290.000189
M203N203NaaCaaT1212AY.320.00639
M203N203NaaCaaT1212B.1.1.5190.000477
M203N203NaaCaaT1212B.1.360.001751
M203N203NaaCaaT1111AY.450.001339
M203N203NaaCaaT1111AY.46.40.00181
M203N203NaaCaaT1111B.1.4430.051402
M203N203NaaCaaT1111P.1.140.000526
M203N203NaaCaaT1010AY.460.001041
M203N203NaaCaaT1010B.1.1.4340.003486
M203N203NaaCaaT1010B.1.5250.001132
M203N203TaAcaCc79All0.000001
M203N203KaaCaaA69All0.000001
M203N203KaaCaaG39All0.000001
M203N203TaACaCT29All0
M203N203NaaCaaT99AY.1000.000414
M203N203NaaCaaT99AY.420.000362
M203N203NaaCaaT99AY.680.002464
M203N203NaaCaaT99AY.90.000608
M203N203NaaCaaT99AY.9.10.000754
M203N203NaaCaaT99B.1.1.4120.068702
M203N203NaaCaaT99B.1.2340.001187
M203N203NaaCaaT99B.1.621.10.004552
M203N203NaaCaaT88AY.260.000226
M203N203NaaCaaT88AY.39.10.000317
M203N203NaaCaaT88B.1.5800.03252
M203N203NaaCaaT88Q.10.001011
M203N203SaAcaGc77All0.000001
M203N203NaaCaaT77AY.1190.000247
M203N203NaaCaaT77AY.340.000679
M203N203NaaCaaT77AY.46.50.001389
M203N203NaaCaaT77AY.910.005113
M203N203NaaCaaT77B.1.4010.057377
M203N203NaaCaaT66AY.100.00318
M203N203NaaCaaT66AY.1170.000507
M203N203NaaCaaT66AY.1200.000223
M203N203NaaCaaT66AY.99.20.000553
M203N203NaaCaaT66B.1.1.2220.001224
M203N203NaaCaaT66B.1.1.2840.000644
M203N203NaaCaaT66B.1.214.20.003597
M203N203NaaCaaT66B.1.4000.002574
M203N203NaaCaaT66P.1.170.000971
M203N203NaaCaaT66Q.80.000989
M203N203IaAcaTc55All0.000001
M203N203NaaCaaT55AY.230.000349
M203N203NaaCaaT55AY.330.000334
M203N203NaaCaaT55AY.490.015974
M203N203NaaCaaT55B.1.258.160.008183
M203N203NaaCaaT55B.1.258.170.00052
M203N203NaaCaaT55B.1.36.10.005701
M203N203NaaCaaT55B.1.5640.002129
M203N203NaaCaaT55B.1.5950.001305
M203N203NaaCaaT55P.20.000933
M203N203YAacTac44All0.000001
M203N203NaaCaaT44B0.000511
M203N203NaaCaaT44B.1.1.2140.000222
M203N203NaaCaaT44B.1.1.3160.0037
M203N203NaaCaaT44B.1.1.700.001364
M203N203NaaCaaT44B.1.1470.003023
M203N203NaaCaaT44B.1.177.730.002265
M203N203NaaCaaT44B.1.4990.004202
M203N203NaaCaaT44B.1.5750.001214
M203N203NaaCaaT44B.1.617.30.01194
M203N203NaaCaaT33AY.270.000194
M203N203NaaCaaT33AY.520.002443
M203N203NaaCaaT33AY.670.001393
M203N203NaaCaaT33AY.710.001425
M203N203NaaCaaT33AY.850.001282
M203N203delAAC---33B.10.000027
M203N203NaaCaaT33B.1.1.3120.005736
M203N203NaaCaaT33B.1.1.370.000579
M203N203NaaCaaT33B.1.177.600.000655
M203N203NaaCaaT33B.1.2320.001612
M203N203NaaCaaT33B.1.2580.0002
M203N203NaaCaaT33B.1.258.20.013514
M203N203NaaCaaT33B.1.5510.003871
M203N203NaaCaaT33P.1.70.000958
M203N203NaaCaaT33P.60.009434
M203N203NaaCaaT22A.10.000564
M203N203NaaCaaT22A.2.50.000998
M203N203TaAcaCc22A.2.5.20.003145
M203N203GAAcGGc22All0
M203N203del1Aac-ac12All0
M203N203del1AaC-aT12All0
M203N203NaaCaaT22AY.1140.000462
M203N203NaaCaaT22AY.1210.000271
M203N203NaaCaaT22AY.360.000296
M203N203NaaCaaT22AY.370.000632
M203N203NaaCaaT22AY.4.2.10.000298
M203N203NaaCaaT22AY.410.000588
M203N203NaaCaaT22AY.540.000191
M203N203NaaCaaT22AY.840.000875
M203N203NaaCaaT22AY.980.000158
M203N203TaAcaCc22B.10.000018
M203N203NaaCaaT22B.1.1.100.00223
M203N203NaaCaaT22B.1.1.1120.117647
M203N203NaaCaaT22B.1.1.2160.001781
M203N203NaaCaaT22B.1.1.2430.008163
M203N203NaaCaaT22B.1.1.280.000622
M203N203NaaCaaT22B.1.1.3060.000877
M203N203NaaCaaT22B.1.1.3930.222222
M203N203NaaCaaT22B.1.1.4020.022222
M203N203NaaCaaT22B.1.1.4160.00181
M203N203NaaCaaT22B.1.1.4850.033333
M203N203NaaCaaT22B.1.177.620.002384
M203N203NaaCaaT22B.1.36.290.001035
M203N203NaaCaaT22B.1.36.80.002
M203N203NaaCaaT22B.1.3610.002577
M203N203NaaCaaT22B.1.3810.015625
M203N203NaaCaaT22B.1.4360.002058
M203N203KaaCaaA22B.1.466.20.000782
M203N203HAacCac110.055556
M203N203delAAC---11A0.000387
M203N203NaaCaaT11A0.000387
M203N203NaaCaaT11A.190.009434
M203N203DAacGac11A.2.40.003367
M203N203NaaCaaT11A.2.5.20.001572
M203N203NaaCaaT11A.2.5.30.010309
M203N203NaaCaaT11A.23.10.000704
M203N203NaaCaaT11AE.60.038462
M203N203DAacGac11All0
M203N203WAACTGG11All0
M203N203HAacCac11All0
M203N203RaACaGA11All0
M203N203SaAcaGc11AY.1000.000046
M203N203NaaCaaT11AY.1020.000027
M203N203SaAcaGc11AY.1030.000006
M203N203GAAcGGc11AY.1030.000006
M203N203NaaCaaT11AY.1050.000643
M203N203NaaCaaT11AY.1080.001103
M203N203NaaCaaT11AY.1130.000142
M203N203NaaCaaT11AY.1150.005208
M203N203NaaCaaT11AY.1160.000287
M203N203NaaCaaT11AY.120.000316
M203N203SaAcaGc11AY.120.10.000321
M203N203NaaCaaT11AY.130.000161
M203N203NaaCaaT11AY.160.00038
M203N203NaaCaaT11AY.190.00114
M203N203TaACaCT11AY.250.000006
M203N203del1AaC-aT11AY.30.00001
M203N203NaaCaaT11AY.3.10.000085
M203N203NaaCaaT11AY.34.10.00051
M203N203NaaCaaT11AY.4.40.000409
M203N203NaaCaaT11AY.400.000964
M203N203WAACTGG11AY.420.00004
M203N203RaACaGA11AY.430.000004
M203N203delAAC---11AY.430.000004
M203N203SaAcaGc11AY.430.000004
M203N203TaAcaCc11AY.440.000006
M203N203GAAcGGc11AY.440.000006
M203N203SaAcaGc11AY.440.000006
M203N203KaaCaaG11AY.440.000006
M203N203NaaCaaT11AY.46.30.000934
M203N203NaaCaaT11AY.46.60.000072
M203N203NaaCaaT11AY.480.000465
M203N203NaaCaaT11AY.5.30.000337
M203N203NaaCaaT11AY.510.000909
M203N203NaaCaaT11AY.530.000288
M203N203KaaCaaA11AY.580.000907
M203N203NaaCaaT11AY.590.00053
M203N203NaaCaaT11AY.60.000041
M203N203NaaCaaT11AY.610.000105
M203N203NaaCaaT11AY.640.000595
M203N203NaaCaaT11AY.650.000533
M203N203SaAcaGc11AY.680.000274
M203N203NaaCaaT11AY.700.000209
M203N203YAacTac11AY.75.10.00018
M203N203NaaCaaT11AY.790.001211
M203N203NaaCaaT11AY.880.000884
M203N203NaaCaaT11AY.960.002075
M203N203KaaCaaG11AY.980.000079
M203N203NaaCaaT11AZ.10.000867
M203N203YAacTac11B0.000128
M203N203KaaCaaA11B.10.000009
M203N203SaAcaGc11B.10.000009
M203N203IaAcaTc11B.10.000009
M203N203NaaCaaT11B.1.1.10.000327
M203N203NaaCaaT11B.1.1.1300.015385
M203N203NaaCaaT11B.1.1.250.000569
M203N203NaaCaaT11B.1.1.270.00565
M203N203NaaCaaT11B.1.1.2770.000759
M203N203NaaCaaT11B.1.1.3110.000358
M203N203NaaCaaT11B.1.1.3180.000302
M203N203NaaCaaT11B.1.1.3480.000796
M203N203NaaCaaT11B.1.1.3490.010309
M203N203NaaCaaT11B.1.1.3510.002793
M203N203NaaCaaT11B.1.1.3530.020833
M203N203NaaCaaT11B.1.1.3690.000446
M203N203NaaCaaT11B.1.1.4210.030303
M203N203NaaCaaT11B.1.1.4480.002033
M203N203NaaCaaT11B.1.1.500.000679
M203N203NaaCaaT11B.1.1.5230.001563
M203N203IaAcaTc11B.1.1.70.000001
M203N203del1Aac-ac11B.1.1.70.000001
M203N203NaaCaaT11B.1.1110.001175
M203N203NaaCaaT11B.1.1340.005464
M203N203NaaCaaT11B.1.1570.002985
M203N203IaAcaTc11B.1.1600.000031
M203N203NaaCaaT11B.1.160.140.002119
M203N203NaaCaaT11B.1.177.170.000821
M203N203TaACaCT11B.1.177.210.000076
M203N203NaaCaaT11B.1.177.210.000076
M203N203NaaCaaT11B.1.177.350.000691
M203N203NaaCaaT11B.1.177.360.016129
M203N203NaaCaaT11B.1.177.40.000211
M203N203NaaCaaT11B.1.177.650.000665
M203N203KaaCaaA11B.1.177.760.002494
M203N203NaaCaaT11B.1.177.90.001332
M203N203NaaCaaT11B.1.2060.000816
M203N203NaaCaaT11B.1.2140.003663
M203N203NaaCaaT11B.1.2180.005155
M203N203KaaCaaA11B.1.2210.000071
M203N203NaaCaaT11B.1.2220.001692
M203N203delAAC---11B.1.2340.000132
M203N203delAAC---11B.1.258.110.000396
M203N203NaaCaaT11B.1.2840.013158
M203N203NaaCaaT11B.1.3110.000275
M203N203TaAcaCc11B.1.3130.006579
M203N203NaaCaaT11B.1.3490.000715
M203N203delAAC---11B.1.3510.00003
M203N203NaaCaaT11B.1.351.20.000303
M203N203NaaCaaT11B.1.36.180.00042
M203N203NaaCaaT11B.1.3690.000285
M203N203NaaCaaT11B.1.4260.001009
M203N203NaaCaaT11B.1.438.10.000107
M203N203NaaCaaT11B.1.4530.003236
M203N203NaaCaaT11B.1.4620.007246
M203N203NaaCaaT11B.1.4680.005714
M203N203NaaCaaT11B.1.4730.019231
M203N203NaaCaaT11B.1.5430.01
M203N203NaaCaaT11B.1.5460.003704
M203N203NaaCaaT11B.1.5580.004566
M203N203YAacTac11B.1.5960.000087
M203N203NaaCaaT11B.1.5990.00365
M203N203IaAcaTc11B.1.5990.00365
M203N203NaaCaaT11B.1.6090.000479
M203N203YAacTac11B.1.617.20.000004
M203N203TaAcaCc11B.1.617.20.000004
M203N203KaaCaaG11B.1.6210.000089
M203N203NaaCaaT11B.1.6280.000352
M203N203NaaCaaT11B.1.960.018868
M203N203NaaCaaT11B.30.000831
M203N203NaaCaaT11C.10.002392
M203N203NaaCaaT11C.350.000774
M203N203NaaCaaT11C.37.10.002618
M203N203NaaCaaT11D.20.000075
M203N203IaAcaTc11D.20.000075
M203N203NaaCaaT11P.1.120.000484
M203N203NaaCaaT11P.1.150.000232
M203N203NaaCaaT11P.1.60.001946
M203N203NaaCaaT11P.30.001595
M203N203NaaCaaT11Q.30.000145
M203N203NaaCaaT11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.