CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
M | 2 | A2S | nonsyn | Gca | Tca | 16170 | 16013 | 0.990291 | 26526-26528 | |
M | 2 | A2S | nonsyn | GcA | TcT | 16170 | 156 | 0.0096475 | 26526-26528 | |
M | 2 | A2S | nonsyn | GcA | TcC | 16170 | 1 | 0.0000618429 | 26526-26528 | |
M | 2 | A2V | nonsyn | gCa | gTa | 7870 | 7865 | 0.999365 | 26526-26528 | |
M | 2 | A2V | nonsyn | gCA | gTG | 7870 | 2 | 0.00025413 | 26526-26528 | |
M | 2 | A2V | nonsyn | gCA | gTT | 7870 | 2 | 0.00025413 | 26526-26528 | |
M | 2 | A2V | nonsyn | gCA | gTC | 7870 | 1 | 0.000127065 | 26526-26528 | |
M | 2 | A2A | syn | gcA | gcT | 4040 | 2817 | 0.697277 | 26526-26528 | |
M | 2 | A2A | syn | gcA | gcG | 4040 | 1164 | 0.288119 | 26526-26528 | |
M | 2 | A2A | syn | gcA | gcC | 4040 | 59 | 0.014604 | 26526-26528 | |
M | 2 | A2T | nonsyn | Gca | Aca | 1341 | 1341 | 1 | 26526-26528 | |
M | 2 | A2P | nonsyn | Gca | Cca | 66 | 66 | 1 | 26526-26528 | |
M | 2 | A2del | del | GCA | --- | 46 | 46 | 1 | 26526-26528 | |
M | 2 | A2E | nonsyn | gCa | gAa | 28 | 27 | 0.964286 | 26526-26528 | |
M | 2 | A2E | nonsyn | gCA | gAG | 28 | 1 | 0.0357143 | 26526-26528 | |
M | 2 | A2L | nonsyn | GCa | TTa | 21 | 21 | 1 | 26526-26528 | |
M | 2 | A2del1 | del | gcA | gc- | 15 | 8 | 0.533333 | 26526-26528 | |
M | 2 | A2del1 | del | gCa | g-a | 15 | 3 | 0.2 | 26526-26528 | |
M | 2 | A2del1 | del | Gca | -ca | 15 | 2 | 0.133333 | 26526-26528 | |
M | 2 | A2del1 | del | GcA | Ac- | 15 | 1 | 0.0666667 | 26526-26528 | |
M | 2 | A2del1 | del | GcA | Tc- | 15 | 1 | 0.0666667 | 26526-26528 | |
M | 2 | A2G | nonsyn | gCa | gGa | 9 | 9 | 1 | 26526-26528 | |
M | 2 | A2I | nonsyn | GCa | ATa | 2 | 2 | 1 | 26526-26528 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
M | 2 | A2S | Gca | Tca | 16013 | 16170 | All | 0.003063 |
M | 2 | A2S | GcA | TcT | 156 | 16170 | All | 0.00003 |
M | 2 | A2S | GcA | TcC | 1 | 16170 | All | 0 |
M | 2 | A2V | gCa | gTa | 7865 | 7870 | All | 0.001504 |
M | 2 | A2V | gCA | gTT | 2 | 7870 | All | 0 |
M | 2 | A2V | gCA | gTG | 2 | 7870 | All | 0 |
M | 2 | A2V | gCA | gTC | 1 | 7870 | All | 0 |
M | 2 | A2S | Gca | Tca | 7693 | 7843 | B.1.1.7 | 0.006887 |
M | 2 | A2S | GcA | TcT | 150 | 7843 | B.1.1.7 | 0.000134 |
M | 2 | A2A | gcA | gcT | 2817 | 4040 | All | 0.000539 |
M | 2 | A2A | gcA | gcG | 1164 | 4040 | All | 0.000223 |
M | 2 | A2A | gcA | gcC | 59 | 4040 | All | 0.000011 |
M | 2 | A2T | Gca | Aca | 1341 | 1341 | All | 0.000256 |
M | 2 | A2V | gCa | gTa | 1319 | 1320 | AY.118 | 0.082634 |
M | 2 | A2V | gCA | gTG | 1 | 1320 | AY.118 | 0.000063 |
M | 2 | A2S | Gca | Tca | 1266 | 1266 | AY.4.2 | 0.027458 |
M | 2 | A2A | gcA | gcG | 986 | 1228 | B.1.1.7 | 0.000883 |
M | 2 | A2A | gcA | gcT | 237 | 1228 | B.1.1.7 | 0.000212 |
M | 2 | A2A | gcA | gcC | 5 | 1228 | B.1.1.7 | 0.000004 |
M | 2 | A2V | gCa | gTa | 963 | 965 | B.1.1.7 | 0.000862 |
M | 2 | A2V | gCA | gTT | 2 | 965 | B.1.1.7 | 0.000002 |
M | 2 | A2A | gcA | gcT | 926 | 929 | AY.5 | 0.019121 |
M | 2 | A2A | gcA | gcG | 3 | 929 | AY.5 | 0.000062 |
M | 2 | A2S | Gca | Tca | 846 | 846 | AY.4 | 0.001317 |
M | 2 | A2S | Gca | Tca | 662 | 662 | AY.11 | 0.886212 |
M | 2 | A2V | gCa | gTa | 621 | 621 | AY.4 | 0.000967 |
M | 2 | A2T | Gca | Aca | 620 | 620 | P.1.13 | 0.557053 |
M | 2 | A2S | Gca | Tca | 600 | 601 | B.1.617.2 | 0.002259 |
M | 2 | A2S | GcA | TcT | 1 | 601 | B.1.617.2 | 0.000004 |
M | 2 | A2V | gCa | gTa | 488 | 488 | B.1.617.2 | 0.001838 |
M | 2 | A2V | gCa | gTa | 357 | 357 | B.1.448 | 0.937008 |
M | 2 | A2S | Gca | Tca | 348 | 348 | AY.43 | 0.001542 |
M | 2 | A2S | Gca | Tca | 308 | 308 | AY.44 | 0.001875 |
M | 2 | A2V | gCa | gTa | 307 | 307 | AY.3 | 0.003054 |
M | 2 | A2V | gCa | gTa | 307 | 307 | AY.47 | 0.009549 |
M | 2 | A2S | Gca | Tca | 256 | 256 | P.1.17 | 0.041411 |
M | 2 | A2S | Gca | Tca | 253 | 253 | D.2 | 0.018985 |
M | 2 | A2A | gcA | gcT | 195 | 250 | B.1.617.2 | 0.000734 |
M | 2 | A2A | gcA | gcG | 52 | 250 | B.1.617.2 | 0.000196 |
M | 2 | A2A | gcA | gcC | 3 | 250 | B.1.617.2 | 0.000011 |
M | 2 | A2A | gcA | gcT | 222 | 228 | AY.4 | 0.000346 |
M | 2 | A2A | gcA | gcG | 6 | 228 | AY.4 | 0.000009 |
M | 2 | A2S | Gca | Tca | 210 | 210 | AY.33 | 0.014023 |
M | 2 | A2V | gCa | gTa | 210 | 210 | B.1.1.429 | 0.967742 |
M | 2 | A2T | Gca | Aca | 209 | 209 | B.1.1.519 | 0.0083 |
M | 2 | A2V | gCa | gTa | 209 | 209 | B.1.177 | 0.002752 |
M | 2 | A2V | gCa | gTa | 192 | 193 | B.1 | 0.001759 |
M | 2 | A2V | gCA | gTC | 1 | 193 | B.1 | 0.000009 |
M | 2 | A2S | Gca | Tca | 190 | 190 | AY.100 | 0.008741 |
M | 2 | A2V | gCa | gTa | 190 | 190 | S.1 | 0.940594 |
M | 2 | A2S | Gca | Tca | 167 | 167 | AY.103 | 0.001037 |
M | 2 | A2T | Gca | Aca | 167 | 167 | AY.42 | 0.006718 |
M | 2 | A2A | gcA | gcT | 145 | 150 | AY.43 | 0.000642 |
M | 2 | A2A | gcA | gcG | 5 | 150 | AY.43 | 0.000022 |
M | 2 | A2S | Gca | Tca | 144 | 144 | B.1.1.210 | 0.822857 |
M | 2 | A2V | gCa | gTa | 144 | 144 | B.1.1.217 | 0.523636 |
M | 2 | A2S | Gca | Tca | 140 | 140 | B.1.422 | 0.113729 |
M | 2 | A2S | Gca | Tca | 139 | 139 | AY.3 | 0.001383 |
M | 2 | A2A | gcA | gcT | 135 | 136 | B.1.177 | 0.001778 |
M | 2 | A2A | gcA | gcG | 1 | 136 | B.1.177 | 0.000013 |
M | 2 | A2V | gCa | gTa | 132 | 132 | B.1.1.236 | 0.910345 |
M | 2 | A2V | gCa | gTa | 128 | 128 | B.1.1.50 | 0.086897 |
M | 2 | A2S | Gca | Tca | 128 | 128 | B.1.2 | 0.001127 |
M | 2 | A2S | Gca | Tca | 127 | 127 | AY.26 | 0.003595 |
M | 2 | A2S | Gca | Tca | 117 | 117 | B.1 | 0.001072 |
M | 2 | A2A | gcA | gcT | 113 | 113 | B.1.243 | 0.007863 |
M | 2 | A2V | gCa | gTa | 110 | 110 | B.1.620 | 0.104068 |
M | 2 | A2S | Gca | Tca | 109 | 109 | B.1.177 | 0.001435 |
M | 2 | A2V | gCa | gTa | 109 | 109 | B.1.2 | 0.00096 |
M | 2 | A2V | gCa | gTa | 103 | 103 | AY.103 | 0.00064 |
M | 2 | A2V | gCa | gTa | 101 | 101 | AY.98.1 | 0.004892 |
M | 2 | A2V | gCa | gTa | 99 | 99 | B.1.554 | 0.436123 |
M | 2 | A2V | gCa | gTa | 97 | 97 | B.1.1 | 0.00176 |
M | 2 | A2S | Gca | Tca | 93 | 93 | AY.25 | 0.000559 |
M | 2 | A2S | Gca | Tca | 92 | 92 | B.1.526 | 0.002162 |
M | 2 | A2S | Gca | Tca | 91 | 91 | AY.39 | 0.002249 |
M | 2 | A2V | gCa | gTa | 88 | 88 | B.1.637 | 0.00643 |
M | 2 | A2V | gCa | gTa | 86 | 86 | AY.25 | 0.000517 |
M | 2 | A2V | gCa | gTa | 84 | 84 | AY.44 | 0.000511 |
M | 2 | A2S | Gca | Tca | 82 | 82 | B.1.1 | 0.001488 |
M | 2 | A2S | Gca | Tca | 82 | 82 | P.1 | 0.001292 |
M | 2 | A2V | gCa | gTa | 78 | 78 | B.1.221 | 0.005541 |
M | 2 | A2V | gCa | gTa | 76 | 76 | P.1 | 0.001197 |
M | 2 | A2S | Gca | Tca | 75 | 75 | AY.39.1 | 0.002971 |
M | 2 | A2P | Gca | Cca | 66 | 66 | All | 0.000013 |
M | 2 | A2A | gcA | gcT | 65 | 65 | AY.100 | 0.00299 |
M | 2 | A2S | Gca | Tca | 65 | 65 | B.1.1.519 | 0.002581 |
M | 2 | A2V | gCa | gTa | 62 | 62 | AY.43 | 0.000275 |
M | 2 | A2A | gcA | gcT | 58 | 61 | AY.25 | 0.000349 |
M | 2 | A2A | gcA | gcG | 2 | 61 | AY.25 | 0.000012 |
M | 2 | A2A | gcA | gcC | 1 | 61 | AY.25 | 0.000006 |
M | 2 | A2S | Gca | Tca | 59 | 59 | AY.4.5 | 0.006342 |
M | 2 | A2S | Gca | Tca | 59 | 59 | B.1.637 | 0.004311 |
M | 2 | A2T | Gca | Aca | 58 | 58 | B.1.1.7 | 0.000052 |
M | 2 | A2A | gcA | gcT | 58 | 58 | B.1.234 | 0.007653 |
M | 2 | A2S | Gca | Tca | 56 | 56 | AY.47 | 0.001742 |
M | 2 | A2V | gCa | gTa | 56 | 56 | P.1.14 | 0.002677 |
M | 2 | A2V | gCa | gTa | 54 | 54 | AY.20 | 0.002099 |
M | 2 | A2V | gCa | gTa | 53 | 53 | AY.29 | 0.000836 |
M | 2 | A2A | gcA | gcT | 50 | 51 | AY.44 | 0.000304 |
M | 2 | A2A | gcA | gcC | 1 | 51 | AY.44 | 0.000006 |
M | 2 | A2A | gcA | gcT | 29 | 49 | AY.103 | 0.00018 |
M | 2 | A2A | gcA | gcC | 15 | 49 | AY.103 | 0.000093 |
M | 2 | A2A | gcA | gcG | 5 | 49 | AY.103 | 0.000031 |
M | 2 | A2del | GCA | --- | 46 | 46 | All | 0.000009 |
M | 2 | A2S | Gca | Tca | 45 | 45 | B.1.351 | 0.001338 |
M | 2 | A2S | Gca | Tca | 44 | 44 | AY.54 | 0.004195 |
M | 2 | A2A | gcA | gcG | 39 | 44 | Q.8 | 0.006431 |
M | 2 | A2A | gcA | gcT | 5 | 44 | Q.8 | 0.000825 |
M | 2 | A2S | Gca | Tca | 42 | 42 | AY.20 | 0.001632 |
M | 2 | A2S | Gca | Tca | 42 | 42 | AY.74 | 0.004857 |
M | 2 | A2S | Gca | Tca | 41 | 41 | AY.102 | 0.001087 |
M | 2 | A2S | Gca | Tca | 41 | 41 | AY.6 | 0.001686 |
M | 2 | A2V | gCa | gTa | 40 | 40 | C.37 | 0.004643 |
M | 2 | A2V | gCa | gTa | 38 | 38 | B.1.258.17 | 0.003951 |
M | 2 | A2T | Gca | Aca | 37 | 37 | AY.75 | 0.002073 |
M | 2 | A2A | gcA | gcT | 32 | 37 | B.1 | 0.000293 |
M | 2 | A2A | gcA | gcG | 3 | 37 | B.1 | 0.000027 |
M | 2 | A2A | gcA | gcC | 2 | 37 | B.1 | 0.000018 |
M | 2 | A2A | gcA | gcT | 36 | 36 | AY.121 | 0.004871 |
M | 2 | A2S | Gca | Tca | 35 | 35 | AY.5 | 0.000723 |
M | 2 | A2S | Gca | Tca | 34 | 34 | AY.3.1 | 0.002899 |
M | 2 | A2A | gcA | gcT | 32 | 34 | B.1.2 | 0.000282 |
M | 2 | A2A | gcA | gcG | 2 | 34 | B.1.2 | 0.000018 |
M | 2 | A2V | gCa | gTa | 33 | 33 | AY.119 | 0.001165 |
M | 2 | A2A | gcA | gcT | 32 | 33 | AY.20 | 0.001244 |
M | 2 | A2A | gcA | gcG | 1 | 33 | AY.20 | 0.000039 |
M | 2 | A2S | Gca | Tca | 32 | 32 | AY.13 | 0.005151 |
M | 2 | A2T | Gca | Aca | 32 | 32 | AY.4 | 0.00005 |
M | 2 | A2V | gCa | gTa | 32 | 32 | B.1.1.519 | 0.001271 |
M | 2 | A2V | gCa | gTa | 31 | 31 | AY.102 | 0.000822 |
M | 2 | A2A | gcA | gcT | 30 | 30 | AY.5.4 | 0.008301 |
M | 2 | A2E | gCa | gAa | 27 | 28 | All | 0.000005 |
M | 2 | A2E | gCA | gAG | 1 | 28 | All | 0 |
M | 2 | A2S | Gca | Tca | 28 | 28 | B.1.396 | 0.01976 |
M | 2 | A2S | Gca | Tca | 27 | 27 | AY.119 | 0.000953 |
M | 2 | A2V | gCa | gTa | 27 | 27 | AY.39 | 0.000667 |
M | 2 | A2S | Gca | Tca | 27 | 27 | B.1.258 | 0.001797 |
M | 2 | A2A | gcA | gcT | 26 | 26 | B.1.351 | 0.000773 |
M | 2 | A2A | gcA | gcT | 23 | 26 | B.1.526 | 0.000541 |
M | 2 | A2A | gcA | gcG | 3 | 26 | B.1.526 | 0.000071 |
M | 2 | A2A | gcA | gcT | 25 | 25 | AY.22 | 0.052301 |
M | 2 | A2S | Gca | Tca | 25 | 25 | AY.28 | 0.047259 |
M | 2 | A2A | gcA | gcT | 25 | 25 | B.1.1.519 | 0.000993 |
M | 2 | A2V | gCa | gTa | 25 | 25 | B.1.177.82 | 0.011933 |
M | 2 | A2S | Gca | Tca | 24 | 24 | AY.61 | 0.002515 |
M | 2 | A2S | Gca | Tca | 23 | 23 | AY.121 | 0.003112 |
M | 2 | A2S | Gca | Tca | 23 | 23 | AY.29 | 0.000363 |
M | 2 | A2P | Gca | Cca | 22 | 22 | AY.4 | 0.000034 |
M | 2 | A2V | gCa | gTa | 22 | 22 | B.1.1.282 | 0.255814 |
M | 2 | A2L | GCa | TTa | 21 | 21 | All | 0.000004 |
M | 2 | A2A | gcA | gcT | 21 | 21 | AY.119 | 0.000741 |
M | 2 | A2S | Gca | Tca | 21 | 21 | AY.98.1 | 0.001017 |
M | 2 | A2S | Gca | Tca | 21 | 21 | B.1.1.277 | 0.015933 |
M | 2 | A2S | Gca | Tca | 21 | 21 | B.1.429 | 0.000494 |
M | 2 | A2V | gCa | gTa | 21 | 21 | B.1.526 | 0.000494 |
M | 2 | A2S | Gca | Tca | 21 | 21 | B.1.621 | 0.001859 |
M | 2 | A2V | gCa | gTa | 18 | 18 | A.2 | 0.011913 |
M | 2 | A2S | Gca | Tca | 17 | 18 | AY.120 | 0.000632 |
M | 2 | A2S | GcA | TcT | 1 | 18 | AY.120 | 0.000037 |
M | 2 | A2A | gcA | gcT | 16 | 18 | AY.23 | 0.001116 |
M | 2 | A2A | gcA | gcG | 2 | 18 | AY.23 | 0.000139 |
M | 2 | A2V | gCa | gTa | 18 | 18 | B.1.177.81 | 0.003408 |
M | 2 | A2S | Gca | Tca | 18 | 18 | B.1.36.31 | 0.031524 |
M | 2 | A2S | Gca | Tca | 18 | 18 | B.1.438.1 | 0.001931 |
M | 2 | A2V | gCa | gTa | 17 | 17 | AY.120.1 | 0.005457 |
M | 2 | A2T | Gca | Aca | 17 | 17 | AY.25 | 0.000102 |
M | 2 | A2T | Gca | Aca | 17 | 17 | AY.39 | 0.00042 |
M | 2 | A2V | gCa | gTa | 17 | 17 | AY.42 | 0.000684 |
M | 2 | A2S | Gca | Tca | 17 | 17 | AY.92 | 0.004884 |
M | 2 | A2A | gcA | gcT | 15 | 17 | B.1.1 | 0.000272 |
M | 2 | A2A | gcA | gcG | 2 | 17 | B.1.1 | 0.000036 |
M | 2 | A2S | Gca | Tca | 17 | 17 | B.1.177.82 | 0.008115 |
M | 2 | A2S | Gca | Tca | 17 | 17 | Q.1 | 0.002148 |
M | 2 | A2S | Gca | Tca | 16 | 16 | AY.106 | 0.005358 |
M | 2 | A2T | Gca | Aca | 16 | 16 | AY.120 | 0.000595 |
M | 2 | A2S | Gca | Tca | 16 | 16 | AY.75 | 0.000896 |
M | 2 | A2V | gCa | gTa | 16 | 16 | AY.9.1 | 0.00134 |
M | 2 | A2T | Gca | Aca | 16 | 16 | B.1.617.2 | 0.00006 |
M | 2 | A2A | gcA | gcT | 9 | 16 | P.1.1 | 0.002859 |
M | 2 | A2A | gcA | gcG | 6 | 16 | P.1.1 | 0.001906 |
M | 2 | A2A | gcA | gcC | 1 | 16 | P.1.1 | 0.000318 |
M | 2 | A2del1 | gcA | gc- | 8 | 15 | All | 0.000002 |
M | 2 | A2del1 | gCa | g-a | 3 | 15 | All | 0.000001 |
M | 2 | A2del1 | Gca | -ca | 2 | 15 | All | 0 |
M | 2 | A2del1 | GcA | Tc- | 1 | 15 | All | 0 |
M | 2 | A2del1 | GcA | Ac- | 1 | 15 | All | 0 |
M | 2 | A2S | Gca | Tca | 15 | 15 | AY.42 | 0.000603 |
M | 2 | A2S | Gca | Tca | 15 | 15 | AY.45 | 0.001825 |
M | 2 | A2V | gCa | gTa | 14 | 14 | AY.14 | 0.001232 |
M | 2 | A2S | Gca | Tca | 14 | 14 | AY.23 | 0.000976 |
M | 2 | A2S | Gca | Tca | 13 | 14 | AY.9 | 0.000879 |
M | 2 | A2S | GcA | TcC | 1 | 14 | AY.9 | 0.000068 |
M | 2 | A2A | gcA | gcT | 14 | 14 | B.1.1.432 | 0.017722 |
M | 2 | A2V | gCa | gTa | 14 | 14 | B.1.427 | 0.000707 |
M | 2 | A2V | gCa | gTa | 14 | 14 | B.1.438.1 | 0.001502 |
M | 2 | A2S | Gca | Tca | 13 | 13 | AY.14 | 0.001144 |
M | 2 | A2A | gcA | gcT | 13 | 13 | AY.26 | 0.000368 |
M | 2 | A2A | gcA | gcT | 9 | 13 | AY.3 | 0.00009 |
M | 2 | A2A | gcA | gcC | 3 | 13 | AY.3 | 0.00003 |
M | 2 | A2A | gcA | gcG | 1 | 13 | AY.3 | 0.00001 |
M | 2 | A2S | Gca | Tca | 13 | 13 | AY.46.6 | 0.000939 |
M | 2 | A2V | gCa | gTa | 13 | 13 | AY.5.3 | 0.004386 |
M | 2 | A2S | Gca | Tca | 13 | 13 | AY.9.2 | 0.000477 |
M | 2 | A2V | gCa | gTa | 13 | 13 | B.1.240 | 0.002802 |
M | 2 | A2S | Gca | Tca | 13 | 13 | B.1.311 | 0.003569 |
M | 2 | A2S | Gca | Tca | 13 | 13 | B.1.36 | 0.001897 |
M | 2 | A2V | gCa | gTa | 13 | 13 | B.1.391 | 0.014656 |
M | 2 | A2A | gcA | gcT | 13 | 13 | P.1 | 0.000205 |
M | 2 | A2V | gCa | gTa | 12 | 12 | AY.39.1 | 0.000475 |
M | 2 | A2T | Gca | Aca | 12 | 12 | AY.44 | 0.000073 |
M | 2 | A2S | Gca | Tca | 12 | 12 | AY.99.2 | 0.001106 |
M | 2 | A2S | Gca | Tca | 12 | 12 | B.1.326 | 0.090909 |
M | 2 | A2S | Gca | Tca | 12 | 12 | B.1.525 | 0.001358 |
M | 2 | A2V | gCa | gTa | 11 | 11 | AY.1 | 0.004353 |
M | 2 | A2S | Gca | Tca | 11 | 11 | AY.113 | 0.001566 |
M | 2 | A2V | gCa | gTa | 11 | 11 | AY.6 | 0.000452 |
M | 2 | A2S | Gca | Tca | 11 | 11 | B.1.1.318 | 0.003319 |
M | 2 | A2L | GCa | TTa | 11 | 11 | B.1.1.368 | 0.033951 |
M | 2 | A2S | Gca | Tca | 11 | 11 | B.1.1.483 | 0.423077 |
M | 2 | A2V | gCa | gTa | 11 | 11 | B.1.258 | 0.000732 |
M | 2 | A2V | gCa | gTa | 11 | 11 | B.1.351.2 | 0.003328 |
M | 2 | A2T | Gca | Aca | 11 | 11 | B.1.429 | 0.000259 |
M | 2 | A2S | Gca | Tca | 11 | 11 | B.1.617.1 | 0.001419 |
M | 2 | A2A | gcA | gcT | 10 | 10 | AY.102 | 0.000265 |
M | 2 | A2S | Gca | Tca | 10 | 10 | AY.118 | 0.000626 |
M | 2 | A2A | gcA | gcT | 10 | 10 | AY.36 | 0.001482 |
M | 2 | A2V | gCa | gTa | 10 | 10 | AY.37 | 0.003161 |
M | 2 | A2V | gCa | gTa | 10 | 10 | AY.45 | 0.001217 |
M | 2 | A2A | gcA | gcT | 10 | 10 | B.1.1.47 | 0.053476 |
M | 2 | A2S | Gca | Tca | 10 | 10 | B.1.160 | 0.000312 |
M | 2 | A2S | Gca | Tca | 10 | 10 | P.1.14 | 0.000478 |
M | 2 | A2V | gCa | gTa | 10 | 10 | Q.8 | 0.001649 |
M | 2 | A2S | Gca | Tca | 9 | 9 | AA.2 | 0.069231 |
M | 2 | A2G | gCa | gGa | 9 | 9 | All | 0.000002 |
M | 2 | A2S | Gca | Tca | 9 | 9 | AY.16 | 0.003417 |
M | 2 | A2V | gCa | gTa | 9 | 9 | AY.26 | 0.000255 |
M | 2 | A2V | gCa | gTa | 9 | 9 | AY.4.2 | 0.000195 |
M | 2 | A2S | Gca | Tca | 9 | 9 | AY.46 | 0.000937 |
M | 2 | A2V | gCa | gTa | 9 | 9 | AY.9.2 | 0.000331 |
M | 2 | A2V | gCa | gTa | 9 | 9 | B | 0.00115 |
M | 2 | A2V | gCa | gTa | 9 | 9 | B.1.1.222 | 0.001836 |
M | 2 | A2S | Gca | Tca | 9 | 9 | B.1.1.28 | 0.002801 |
M | 2 | A2S | Gca | Tca | 9 | 9 | B.1.1.33 | 0.003788 |
M | 2 | A2S | Gca | Tca | 9 | 9 | B.1.1.369 | 0.004016 |
M | 2 | A2S | Gca | Tca | 9 | 9 | B.1.258.17 | 0.000936 |
M | 2 | A2S | Gca | Tca | 9 | 9 | B.1.369 | 0.002567 |
M | 2 | A2S | Gca | Tca | 9 | 9 | B.1.595 | 0.002349 |
M | 2 | A2A | gcA | gcT | 8 | 9 | C.37 | 0.000929 |
M | 2 | A2A | gcA | gcG | 1 | 9 | C.37 | 0.000116 |
M | 2 | A2S | Gca | Tca | 9 | 9 | P.1.1 | 0.002859 |
M | 2 | A2T | Gca | Aca | 8 | 8 | A.21 | 0.022161 |
M | 2 | A2S | Gca | Tca | 8 | 8 | AY.117 | 0.000676 |
M | 2 | A2V | gCa | gTa | 8 | 8 | AY.23 | 0.000558 |
M | 2 | A2A | gcA | gcT | 7 | 8 | AY.39 | 0.000173 |
M | 2 | A2A | gcA | gcG | 1 | 8 | AY.39 | 0.000025 |
M | 2 | A2A | gcA | gcC | 6 | 8 | AY.46.6 | 0.000433 |
M | 2 | A2A | gcA | gcG | 2 | 8 | AY.46.6 | 0.000144 |
M | 2 | A2S | Gca | Tca | 8 | 8 | AY.98 | 0.000632 |
M | 2 | A2V | gCa | gTa | 8 | 8 | B.1.1.434 | 0.002788 |
M | 2 | A2V | gCa | gTa | 8 | 8 | B.1.160 | 0.00025 |
M | 2 | A2V | gCa | gTa | 8 | 8 | B.1.177.21 | 0.000612 |
M | 2 | A2V | gCa | gTa | 8 | 8 | B.1.177.60 | 0.001747 |
M | 2 | A2S | Gca | Tca | 8 | 8 | B.1.177.73 | 0.00453 |
M | 2 | A2S | Gca | Tca | 7 | 8 | B.1.243 | 0.000487 |
M | 2 | A2S | GcA | TcT | 1 | 8 | B.1.243 | 0.00007 |
M | 2 | A2A | gcA | gcC | 8 | 8 | B.1.400 | 0.003432 |
M | 2 | A2V | gCa | gTa | 8 | 8 | B.1.596 | 0.000697 |
M | 2 | A2T | Gca | Aca | 8 | 8 | P.1 | 0.000126 |
M | 2 | A2S | Gca | Tca | 8 | 8 | P.2 | 0.001493 |
M | 2 | A2V | gCa | gTa | 7 | 7 | AC.1 | 0.259259 |
M | 2 | A2A | gcA | gcT | 5 | 7 | AY.117 | 0.000423 |
M | 2 | A2A | gcA | gcG | 2 | 7 | AY.117 | 0.000169 |
M | 2 | A2T | Gca | Aca | 7 | 7 | AY.4.2 | 0.000152 |
M | 2 | A2A | gcA | gcT | 6 | 7 | AY.42 | 0.000241 |
M | 2 | A2A | gcA | gcC | 1 | 7 | AY.42 | 0.00004 |
M | 2 | A2V | gCa | gTa | 7 | 7 | AY.54 | 0.000667 |
M | 2 | A2A | gcA | gcT | 7 | 7 | AY.78 | 0.010786 |
M | 2 | A2A | gcA | gcT | 4 | 7 | AY.9.1 | 0.000335 |
M | 2 | A2A | gcA | gcG | 3 | 7 | AY.9.1 | 0.000251 |
M | 2 | A2V | gCa | gTa | 7 | 7 | AY.92 | 0.002011 |
M | 2 | A2S | Gca | Tca | 7 | 7 | B.1.1.243 | 0.028571 |
M | 2 | A2V | gCa | gTa | 7 | 7 | B.1.1.291 | 0.005197 |
M | 2 | A2S | Gca | Tca | 7 | 7 | B.1.195 | 0.035176 |
M | 2 | A2T | Gca | Aca | 7 | 7 | B.1.2 | 0.000062 |
M | 2 | A2V | gCa | gTa | 7 | 7 | B.1.438 | 0.045752 |
M | 2 | A2S | Gca | Tca | 7 | 7 | B.1.468 | 0.04 |
M | 2 | A2V | gCa | gTa | 7 | 7 | B.1.575 | 0.002124 |
M | 2 | A2V | gCa | gTa | 7 | 7 | B.1.621 | 0.00062 |
M | 2 | A2A | gcA | gcC | 4 | 7 | B.1.637 | 0.000292 |
M | 2 | A2A | gcA | gcT | 2 | 7 | B.1.637 | 0.000146 |
M | 2 | A2A | gcA | gcG | 1 | 7 | B.1.637 | 0.000073 |
M | 2 | A2V | gCa | gTa | 6 | 6 | AY.100 | 0.000276 |
M | 2 | A2T | Gca | Aca | 6 | 6 | AY.20 | 0.000233 |
M | 2 | A2E | gCa | gAa | 6 | 6 | AY.4 | 0.000009 |
M | 2 | A2V | gCa | gTa | 6 | 6 | AY.46.6 | 0.000433 |
M | 2 | A2V | gCa | gTa | 6 | 6 | AY.5 | 0.000124 |
M | 2 | A2S | Gca | Tca | 6 | 6 | AY.71 | 0.00285 |
M | 2 | A2S | Gca | Tca | 6 | 6 | AY.73 | 0.003992 |
M | 2 | A2del | GCA | --- | 6 | 6 | B.1 | 0.000055 |
M | 2 | A2L | GCa | TTa | 6 | 6 | B.1 | 0.000055 |
M | 2 | A2T | Gca | Aca | 6 | 6 | B.1.1 | 0.000109 |
M | 2 | A2S | Gca | Tca | 6 | 6 | B.1.1.214 | 0.000333 |
M | 2 | A2V | gCa | gTa | 6 | 6 | B.1.1.225 | 0.043165 |
M | 2 | A2S | Gca | Tca | 6 | 6 | B.1.1.298 | 0.005172 |
M | 2 | A2V | gCa | gTa | 6 | 6 | B.1.1.306 | 0.00263 |
M | 2 | A2V | gCa | gTa | 6 | 6 | B.1.1.442 | 0.111111 |
M | 2 | A2del | GCA | --- | 6 | 6 | B.1.1.7 | 0.000005 |
M | 2 | A2P | Gca | Cca | 6 | 6 | B.1.1.7 | 0.000005 |
M | 2 | A2V | gCa | gTa | 6 | 6 | B.1.177.32 | 0.008097 |
M | 2 | A2A | gcA | gcT | 6 | 6 | B.1.177.54 | 0.003639 |
M | 2 | A2S | Gca | Tca | 6 | 6 | B.1.234 | 0.000792 |
M | 2 | A2V | gCa | gTa | 6 | 6 | B.1.351 | 0.000178 |
M | 2 | A2V | gCa | gTa | 6 | 6 | B.1.369 | 0.001711 |
M | 2 | A2A | gcA | gcG | 6 | 6 | B.1.517 | 0.002562 |
M | 2 | A2V | gCa | gTa | 6 | 6 | B.1.628 | 0.002114 |
M | 2 | A2V | gCa | gTa | 6 | 6 | B.1.97 | 0.153846 |
M | 2 | A2V | gCa | gTa | 6 | 6 | R.1 | 0.00054 |
M | 2 | A2S | Gca | Tca | 5 | 5 | A | 0.001935 |
M | 2 | A2T | Gca | Aca | 5 | 5 | AY.103 | 0.000031 |
M | 2 | A2T | Gca | Aca | 5 | 5 | AY.117 | 0.000423 |
M | 2 | A2V | gCa | gTa | 5 | 5 | AY.121 | 0.000677 |
M | 2 | A2V | gCa | gTa | 5 | 5 | AY.3.1 | 0.000426 |
M | 2 | A2V | gCa | gTa | 5 | 5 | AY.30 | 0.001979 |
M | 2 | A2T | Gca | Aca | 5 | 5 | AY.43 | 0.000022 |
M | 2 | A2V | gCa | gTa | 5 | 5 | AY.46 | 0.00052 |
M | 2 | A2S | Gca | Tca | 5 | 5 | AY.46.5 | 0.000992 |
M | 2 | A2A | gcA | gcT | 5 | 5 | AY.47 | 0.000156 |
M | 2 | A2S | Gca | Tca | 5 | 5 | AY.51 | 0.004545 |
M | 2 | A2S | Gca | Tca | 5 | 5 | AY.70 | 0.001043 |
M | 2 | A2V | gCa | gTa | 5 | 5 | AY.98 | 0.000395 |
M | 2 | A2S | Gca | Tca | 5 | 5 | B | 0.000639 |
M | 2 | A2A | gcA | gcT | 5 | 5 | B.1.1.216 | 0.004452 |
M | 2 | A2S | Gca | Tca | 5 | 5 | B.1.1.253 | 0.012531 |
M | 2 | A2V | gCa | gTa | 5 | 5 | B.1.1.28 | 0.001556 |
M | 2 | A2S | Gca | Tca | 5 | 5 | B.1.1.286 | 0.014493 |
M | 2 | A2V | gCa | gTa | 5 | 5 | B.1.1.416 | 0.004525 |
M | 2 | A2A | gcA | gcT | 5 | 5 | B.1.177.33 | 0.008224 |
M | 2 | A2S | Gca | Tca | 5 | 5 | B.1.177.4 | 0.001055 |
M | 2 | A2S | Gca | Tca | 5 | 5 | B.1.221 | 0.000355 |
M | 2 | A2V | gCa | gTa | 5 | 5 | B.1.234 | 0.00066 |
M | 2 | A2A | gcA | gcC | 3 | 5 | B.1.429 | 0.000071 |
M | 2 | A2A | gcA | gcG | 2 | 5 | B.1.429 | 0.000047 |
M | 2 | A2S | Gca | Tca | 5 | 5 | B.1.466.2 | 0.001956 |
M | 2 | A2V | gCa | gTa | 5 | 5 | B.1.486 | 0.555556 |
M | 2 | A2V | gCa | gTa | 5 | 5 | B.1.497 | 0.001574 |
M | 2 | A2S | Gca | Tca | 5 | 5 | B.1.523 | 0.012255 |
M | 2 | A2P | Gca | Cca | 5 | 5 | B.1.617.2 | 0.000019 |
M | 2 | A2S | Gca | Tca | 5 | 5 | P.1.10 | 0.001347 |
M | 2 | A2V | gCa | gTa | 5 | 5 | P.1.15 | 0.001162 |
M | 2 | A2V | gCa | gTa | 5 | 5 | Q.1 | 0.000632 |
M | 2 | A2V | gCa | gTa | 5 | 5 | Q.4 | 0.002274 |
M | 2 | A2S | Gca | Tca | 4 | 4 | A.2.5 | 0.001996 |
M | 2 | A2S | Gca | Tca | 4 | 4 | AD.2 | 0.000876 |
M | 2 | A2S | Gca | Tca | 4 | 4 | AE.8 | 0.001956 |
M | 2 | A2S | Gca | Tca | 4 | 4 | AY.10 | 0.00212 |
M | 2 | A2V | gCa | gTa | 4 | 4 | AY.10 | 0.00212 |
M | 2 | A2S | Gca | Tca | 4 | 4 | AY.110 | 0.000451 |
M | 2 | A2S | Gca | Tca | 4 | 4 | AY.111 | 0.000733 |
M | 2 | A2V | gCa | gTa | 4 | 4 | AY.113 | 0.00057 |
M | 2 | A2S | Gca | Tca | 4 | 4 | AY.116 | 0.001147 |
M | 2 | A2V | gCa | gTa | 4 | 4 | AY.117 | 0.000338 |
M | 2 | A2S | Gca | Tca | 4 | 4 | AY.19 | 0.004561 |
M | 2 | A2V | gCa | gTa | 4 | 4 | AY.33 | 0.000267 |
M | 2 | A2S | Gca | Tca | 4 | 4 | AY.34 | 0.000388 |
M | 2 | A2A | gcA | gcT | 3 | 4 | AY.39.1 | 0.000119 |
M | 2 | A2A | gcA | gcG | 1 | 4 | AY.39.1 | 0.00004 |
M | 2 | A2del | GCA | --- | 4 | 4 | AY.4 | 0.000006 |
M | 2 | A2A | gcA | gcT | 4 | 4 | AY.4.2 | 0.000087 |
M | 2 | A2S | Gca | Tca | 4 | 4 | AY.4.2.1 | 0.000596 |
M | 2 | A2A | gcA | gcG | 3 | 4 | AY.54 | 0.000286 |
M | 2 | A2A | gcA | gcT | 1 | 4 | AY.54 | 0.000095 |
M | 2 | A2S | Gca | Tca | 4 | 4 | AY.69 | 0.000747 |
M | 2 | A2A | gcA | gcG | 3 | 4 | AY.9 | 0.000203 |
M | 2 | A2A | gcA | gcT | 1 | 4 | AY.9 | 0.000068 |
M | 2 | A2S | Gca | Tca | 4 | 4 | AY.99 | 0.004197 |
M | 2 | A2V | gCa | gTa | 4 | 4 | B.1.1.1 | 0.001307 |
M | 2 | A2V | gCa | gTa | 4 | 4 | B.1.1.189 | 0.006051 |
M | 2 | A2S | Gca | Tca | 4 | 4 | B.1.1.25 | 0.002274 |
M | 2 | A2del1 | gcA | gc- | 4 | 4 | B.1.1.306 | 0.001754 |
M | 2 | A2S | Gca | Tca | 4 | 4 | B.1.1.306 | 0.001754 |
M | 2 | A2V | gCa | gTa | 4 | 4 | B.1.1.33 | 0.001684 |
M | 2 | A2T | Gca | Aca | 4 | 4 | B.1.160 | 0.000125 |
M | 2 | A2A | gcA | gcT | 4 | 4 | B.1.177.21 | 0.000306 |
M | 2 | A2V | gCa | gTa | 4 | 4 | B.1.177.34 | 0.210526 |
M | 2 | A2T | Gca | Aca | 4 | 4 | B.1.177.54 | 0.002426 |
M | 2 | A2E | gCa | gAa | 4 | 4 | B.1.2 | 0.000035 |
M | 2 | A2S | Gca | Tca | 4 | 4 | B.1.214.2 | 0.002398 |
M | 2 | A2V | gCa | gTa | 4 | 4 | B.1.243 | 0.000278 |
M | 2 | A2V | gCa | gTa | 4 | 4 | B.1.324 | 0.006421 |
M | 2 | A2S | Gca | Tca | 4 | 4 | B.1.340 | 0.017167 |
M | 2 | A2P | Gca | Cca | 4 | 4 | B.1.351 | 0.000119 |
M | 2 | A2S | Gca | Tca | 4 | 4 | B.1.36.29 | 0.002069 |
M | 2 | A2T | Gca | Aca | 4 | 4 | B.1.36.31 | 0.007005 |
M | 2 | A2S | Gca | Tca | 4 | 4 | B.1.427 | 0.000202 |
M | 2 | A2V | gCa | gTa | 4 | 4 | B.1.523 | 0.009804 |
M | 2 | A2S | Gca | Tca | 4 | 4 | B.1.596 | 0.000349 |
M | 2 | A2A | gcA | gcT | 4 | 4 | B.1.620 | 0.003784 |
M | 2 | A2S | Gca | Tca | 4 | 4 | B.1.627 | 0.008081 |
M | 2 | A2V | gCa | gTa | 3 | 3 | A | 0.001161 |
M | 2 | A2A | gcA | gcT | 3 | 3 | A.28 | 0.007937 |
M | 2 | A2V | gCa | gTa | 3 | 3 | AD.2 | 0.000657 |
M | 2 | A2V | gCa | gTa | 3 | 3 | AE.8 | 0.001467 |
M | 2 | A2S | Gca | Tca | 3 | 3 | AY.108 | 0.003308 |
M | 2 | A2S | Gca | Tca | 3 | 3 | AY.114 | 0.000693 |
M | 2 | A2S | Gca | Tca | 3 | 3 | AY.116.1 | 0.000934 |
M | 2 | A2T | Gca | Aca | 3 | 3 | AY.119 | 0.000106 |
M | 2 | A2S | GcA | TcT | 3 | 3 | AY.22 | 0.006276 |
M | 2 | A2T | Gca | Aca | 3 | 3 | AY.23 | 0.000209 |
M | 2 | A2S | Gca | Tca | 3 | 3 | AY.27 | 0.000194 |
M | 2 | A2V | gCa | gTa | 3 | 3 | AY.27 | 0.000194 |
M | 2 | A2A | gcA | gcT | 3 | 3 | AY.29 | 0.000047 |
M | 2 | A2S | Gca | Tca | 3 | 3 | AY.32 | 0.001597 |
M | 2 | A2S | Gca | Tca | 3 | 3 | AY.36 | 0.000445 |
M | 2 | A2A | gcA | gcT | 3 | 3 | AY.46 | 0.000312 |
M | 2 | A2S | Gca | Tca | 3 | 3 | AY.46.3 | 0.002801 |
M | 2 | A2S | Gca | Tca | 3 | 3 | AY.48 | 0.001395 |
M | 2 | A2T | Gca | Aca | 3 | 3 | AY.61 | 0.000314 |
M | 2 | A2V | gCa | gTa | 3 | 3 | AY.7 | 0.000588 |
M | 2 | A2S | Gca | Tca | 3 | 3 | AY.7.1 | 0.000338 |
M | 2 | A2V | gCa | gTa | 3 | 3 | AY.75 | 0.000168 |
M | 2 | A2V | gCa | gTa | 3 | 3 | AY.75.1 | 0.000541 |
M | 2 | A2T | Gca | Aca | 3 | 3 | AY.84 | 0.001312 |
M | 2 | A2T | Gca | Aca | 3 | 3 | AY.97 | 0.005102 |
M | 2 | A2V | gCa | gTa | 3 | 3 | AY.99.2 | 0.000276 |
M | 2 | A2T | Gca | Aca | 3 | 3 | B.1 | 0.000027 |
M | 2 | A2P | Gca | Cca | 3 | 3 | B.1 | 0.000027 |
M | 2 | A2V | gCa | gTa | 3 | 3 | B.1.1.141 | 0.006036 |
M | 2 | A2S | Gca | Tca | 3 | 3 | B.1.1.216 | 0.002671 |
M | 2 | A2S | Gca | Tca | 3 | 3 | B.1.1.222 | 0.000612 |
M | 2 | A2S | Gca | Tca | 3 | 3 | B.1.1.294 | 0.003797 |
M | 2 | A2A | gcA | gcT | 3 | 3 | B.1.1.311 | 0.001074 |
M | 2 | A2V | gCa | gTa | 3 | 3 | B.1.1.317 | 0.001235 |
M | 2 | A2S | Gca | Tca | 3 | 3 | B.1.1.385 | 0.013393 |
M | 2 | A2V | gCa | gTa | 3 | 3 | B.1.1.51 | 0.005155 |
M | 2 | A2S | Gca | Tca | 3 | 3 | B.1.177.21 | 0.000229 |
M | 2 | A2V | gCa | gTa | 3 | 3 | B.1.177.30 | 0.007538 |
M | 2 | A2V | gCa | gTa | 3 | 3 | B.1.177.54 | 0.001819 |
M | 2 | A2V | gCa | gTa | 3 | 3 | B.1.177.56 | 0.002003 |
M | 2 | A2V | gCa | gTa | 3 | 3 | B.1.429 | 0.000071 |
M | 2 | A2S | Gca | Tca | 3 | 3 | B.1.466 | 0.069767 |
M | 2 | A2S | Gca | Tca | 3 | 3 | B.1.561 | 0.001191 |
M | 2 | A2A | gcA | gcT | 3 | 3 | B.1.575.1 | 0.007317 |
M | 2 | A2V | gCa | gTa | 3 | 3 | B.1.617.1 | 0.000387 |
M | 2 | A2S | Gca | Tca | 3 | 3 | B.1.628 | 0.001057 |
M | 2 | A2V | gCa | gTa | 3 | 3 | B.1.638 | 0.157895 |
M | 2 | A2V | gCa | gTa | 3 | 3 | B.1.9.5 | 0.017045 |
M | 2 | A2S | Gca | Tca | 3 | 3 | C.36 | 0.002732 |
M | 2 | A2S | Gca | Tca | 3 | 3 | C.37 | 0.000348 |
M | 2 | A2V | gCa | gTa | 3 | 3 | P.1.12 | 0.001452 |
M | 2 | A2S | Gca | Tca | 3 | 3 | P.1.4 | 0.00293 |
M | 2 | A2S | Gca | Tca | 3 | 3 | P.3 | 0.004785 |
M | 2 | A2S | Gca | Tca | 3 | 3 | Q.7 | 0.003333 |
M | 2 | A2A | gcA | gcT | 3 | 3 | R.1 | 0.00027 |
M | 2 | A2del | GCA | --- | 2 | 2 | 0.111111 | |
M | 2 | A2S | Gca | Tca | 2 | 2 | A.1 | 0.000564 |
M | 2 | A2V | gCa | gTa | 2 | 2 | A.5 | 0.003846 |
M | 2 | A2A | gcA | gcT | 2 | 2 | AD.2 | 0.000438 |
M | 2 | A2I | GCa | ATa | 2 | 2 | All | 0 |
M | 2 | A2A | gcA | gcT | 2 | 2 | AY.108 | 0.002205 |
M | 2 | A2V | gCa | gTa | 2 | 2 | AY.110 | 0.000225 |
M | 2 | A2A | gcA | gcC | 2 | 2 | AY.114 | 0.000462 |
M | 2 | A2S | Gca | Tca | 2 | 2 | AY.12 | 0.000632 |
M | 2 | A2V | gCa | gTa | 2 | 2 | AY.13 | 0.000322 |
M | 2 | A2A | gcA | gcT | 2 | 2 | AY.16 | 0.000759 |
M | 2 | A2S | Gca | Tca | 2 | 2 | AY.16.1 | 0.00094 |
M | 2 | A2A | gcA | gcT | 2 | 2 | AY.23.1 | 0.000835 |
M | 2 | A2S | Gca | Tca | 2 | 2 | AY.23.1 | 0.000835 |
M | 2 | A2P | Gca | Cca | 2 | 2 | AY.3 | 0.00002 |
M | 2 | A2V | gCa | gTa | 2 | 2 | AY.34 | 0.000194 |
M | 2 | A2T | Gca | Aca | 2 | 2 | AY.35 | 0.000466 |
M | 2 | A2S | Gca | Tca | 2 | 2 | AY.37 | 0.000632 |
M | 2 | A2S | Gca | Tca | 2 | 2 | AY.4.3 | 0.001684 |
M | 2 | A2del | GCA | --- | 2 | 2 | AY.4.5 | 0.000215 |
M | 2 | A2E | gCa | gAa | 2 | 2 | AY.43 | 0.000009 |
M | 2 | A2del | GCA | --- | 2 | 2 | AY.43 | 0.000009 |
M | 2 | A2A | gcA | gcT | 2 | 2 | AY.45 | 0.000243 |
M | 2 | A2S | Gca | Tca | 2 | 2 | AY.46.1 | 0.002053 |
M | 2 | A2E | gCa | gAa | 2 | 2 | AY.46.2 | 0.001271 |
M | 2 | A2V | gCa | gTa | 2 | 2 | AY.46.4 | 0.000329 |
M | 2 | A2del | GCA | --- | 2 | 2 | AY.46.6 | 0.000144 |
M | 2 | A2S | Gca | Tca | 2 | 2 | AY.5.3 | 0.000675 |
M | 2 | A2V | gCa | gTa | 2 | 2 | AY.5.4 | 0.000553 |
M | 2 | A2S | Gca | Tca | 2 | 2 | AY.5.4 | 0.000553 |
M | 2 | A2A | gcA | gcT | 2 | 2 | AY.51 | 0.001818 |
M | 2 | A2A | gcA | gcT | 2 | 2 | AY.55 | 0.001835 |
M | 2 | A2T | Gca | Aca | 2 | 2 | AY.56 | 0.00321 |
M | 2 | A2S | Gca | Tca | 2 | 2 | AY.59 | 0.001059 |
M | 2 | A2V | gCa | gTa | 2 | 2 | AY.59 | 0.001059 |
M | 2 | A2A | gcA | gcT | 2 | 2 | AY.61 | 0.00021 |
M | 2 | A2V | gCa | gTa | 2 | 2 | AY.61 | 0.00021 |
M | 2 | A2S | Gca | Tca | 2 | 2 | AY.62 | 0.000871 |
M | 2 | A2S | Gca | Tca | 2 | 2 | AY.68 | 0.000547 |
M | 2 | A2V | gCa | gTa | 2 | 2 | AY.69 | 0.000373 |
M | 2 | A2A | gcA | gcT | 2 | 2 | AY.75 | 0.000112 |
M | 2 | A2S | Gca | Tca | 2 | 2 | AY.75.1 | 0.000361 |
M | 2 | A2V | gCa | gTa | 2 | 2 | AY.82 | 0.002714 |
M | 2 | A2A | gcA | gcT | 1 | 2 | AY.84 | 0.000437 |
M | 2 | A2A | gcA | gcC | 1 | 2 | AY.84 | 0.000437 |
M | 2 | A2S | Gca | Tca | 2 | 2 | AY.85 | 0.000854 |
M | 2 | A2V | gCa | gTa | 2 | 2 | AY.85 | 0.000854 |
M | 2 | A2V | gCa | gTa | 2 | 2 | AY.9 | 0.000135 |
M | 2 | A2T | Gca | Aca | 2 | 2 | AY.9 | 0.000135 |
M | 2 | A2S | Gca | Tca | 2 | 2 | AY.9.1 | 0.000167 |
M | 2 | A2V | gCa | gTa | 2 | 2 | AY.90 | 0.001369 |
M | 2 | A2S | Gca | Tca | 2 | 2 | AY.90 | 0.001369 |
M | 2 | A2A | gcA | gcT | 1 | 2 | B | 0.000128 |
M | 2 | A2A | gcA | gcG | 1 | 2 | B | 0.000128 |
M | 2 | A2S | Gca | Tca | 2 | 2 | B.1.1.1 | 0.000653 |
M | 2 | A2S | Gca | Tca | 2 | 2 | B.1.1.164 | 0.010309 |
M | 2 | A2A | gcA | gcT | 2 | 2 | B.1.1.244 | 0.030769 |
M | 2 | A2V | gCa | gTa | 2 | 2 | B.1.1.25 | 0.001137 |
M | 2 | A2S | Gca | Tca | 2 | 2 | B.1.1.263 | 0.003115 |
M | 2 | A2V | gCa | gTa | 2 | 2 | B.1.1.265 | 0.006309 |
M | 2 | A2V | gCa | gTa | 2 | 2 | B.1.1.269 | 0.002706 |
M | 2 | A2S | Gca | Tca | 2 | 2 | B.1.1.280 | 0.006173 |
M | 2 | A2V | gCa | gTa | 2 | 2 | B.1.1.301 | 0.002358 |
M | 2 | A2S | Gca | Tca | 2 | 2 | B.1.1.344 | 0.021505 |
M | 2 | A2S | Gca | Tca | 2 | 2 | B.1.1.348 | 0.001592 |
M | 2 | A2A | gcA | gcG | 2 | 2 | B.1.1.351 | 0.005587 |
M | 2 | A2V | gCa | gTa | 2 | 2 | B.1.1.37 | 0.000386 |
M | 2 | A2A | gcA | gcG | 1 | 2 | B.1.1.37 | 0.000193 |
M | 2 | A2A | gcA | gcT | 1 | 2 | B.1.1.37 | 0.000193 |
M | 2 | A2A | gcA | gcT | 2 | 2 | B.1.1.416 | 0.00181 |
M | 2 | A2A | gcA | gcT | 2 | 2 | B.1.1.420 | 0.002012 |
M | 2 | A2V | gCa | gTa | 2 | 2 | B.1.1.432 | 0.002532 |
M | 2 | A2S | Gca | Tca | 2 | 2 | B.1.1.434 | 0.000697 |
M | 2 | A2P | Gca | Cca | 2 | 2 | B.1.1.44 | 0.004819 |
M | 2 | A2S | Gca | Tca | 2 | 2 | B.1.1.462 | 0.017241 |
M | 2 | A2S | Gca | Tca | 2 | 2 | B.1.1.50 | 0.001358 |
M | 2 | A2V | gCa | gTa | 2 | 2 | B.1.1.523 | 0.003125 |
M | 2 | A2S | Gca | Tca | 2 | 2 | B.1.1.63 | 0.000772 |
M | 2 | A2del1 | Gca | -ca | 2 | 2 | B.1.1.7 | 0.000002 |
M | 2 | A2V | gCa | gTa | 2 | 2 | B.1.1.70 | 0.000682 |
M | 2 | A2S | Gca | Tca | 2 | 2 | B.1.139 | 0.001466 |
M | 2 | A2A | gcA | gcT | 2 | 2 | B.1.160 | 0.000062 |
M | 2 | A2T | Gca | Aca | 2 | 2 | B.1.177 | 0.000026 |
M | 2 | A2V | gCa | gTa | 2 | 2 | B.1.177.19 | 0.002861 |
M | 2 | A2S | Gca | Tca | 2 | 2 | B.1.177.2 | 0.009091 |
M | 2 | A2T | Gca | Aca | 2 | 2 | B.1.177.57 | 0.000562 |
M | 2 | A2V | gCa | gTa | 2 | 2 | B.1.177.75 | 0.002081 |
M | 2 | A2S | Gca | Tca | 2 | 2 | B.1.177.77 | 0.001452 |
M | 2 | A2S | Gca | Tca | 2 | 2 | B.1.177.83 | 0.002963 |
M | 2 | A2S | Gca | Tca | 2 | 2 | B.1.177.86 | 0.000367 |
M | 2 | A2P | Gca | Cca | 2 | 2 | B.1.2 | 0.000018 |
M | 2 | A2G | gCa | gGa | 2 | 2 | B.1.2 | 0.000018 |
M | 2 | A2V | gCa | gTa | 2 | 2 | B.1.206 | 0.001631 |
M | 2 | A2A | gcA | gcT | 2 | 2 | B.1.223 | 0.005556 |
M | 2 | A2S | Gca | Tca | 2 | 2 | B.1.232 | 0.001075 |
M | 2 | A2A | gcA | gcG | 2 | 2 | B.1.258.3 | 0.00335 |
M | 2 | A2S | Gca | Tca | 2 | 2 | B.1.279 | 0.001027 |
M | 2 | A2V | gCa | gTa | 2 | 2 | B.1.311 | 0.000549 |
M | 2 | A2S | Gca | Tca | 2 | 2 | B.1.36.27 | 0.001527 |
M | 2 | A2S | Gca | Tca | 2 | 2 | B.1.375 | 0.001639 |
M | 2 | A2A | gcA | gcT | 2 | 2 | B.1.409 | 0.001563 |
M | 2 | A2T | Gca | Aca | 2 | 2 | B.1.427 | 0.000101 |
M | 2 | A2A | gcA | gcT | 2 | 2 | B.1.427 | 0.000101 |
M | 2 | A2A | gcA | gcT | 2 | 2 | B.1.428 | 0.002041 |
M | 2 | A2A | gcA | gcT | 2 | 2 | B.1.433 | 0.00639 |
M | 2 | A2S | Gca | Tca | 2 | 2 | B.1.456 | 0.006536 |
M | 2 | A2P | Gca | Cca | 2 | 2 | B.1.466.2 | 0.000782 |
M | 2 | A2S | Gca | Tca | 2 | 2 | B.1.497 | 0.00063 |
M | 2 | A2V | gCa | gTa | 2 | 2 | B.1.511 | 0.068966 |
M | 2 | A2S | Gca | Tca | 2 | 2 | B.1.524 | 0.002813 |
M | 2 | A2V | gCa | gTa | 2 | 2 | B.1.525 | 0.000226 |
M | 2 | A2V | gCa | gTa | 2 | 2 | B.1.561 | 0.000794 |
M | 2 | A2S | Gca | Tca | 2 | 2 | B.1.576 | 0.001813 |
M | 2 | A2V | gCa | gTa | 2 | 2 | B.1.582 | 0.000981 |
M | 2 | A2V | gCa | gTa | 2 | 2 | B.1.588 | 0.00182 |
M | 2 | A2A | gcA | gcT | 2 | 2 | B.1.617.1 | 0.000258 |
M | 2 | A2E | gCa | gAa | 2 | 2 | B.1.617.2 | 0.000008 |
M | 2 | A2del | GCA | --- | 2 | 2 | B.1.617.2 | 0.000008 |
M | 2 | A2S | Gca | Tca | 2 | 2 | B.1.617.3 | 0.00597 |
M | 2 | A2S | Gca | Tca | 2 | 2 | B.1.621.1 | 0.001012 |
M | 2 | A2P | Gca | Cca | 2 | 2 | B.1.628 | 0.000705 |
M | 2 | A2V | gCa | gTa | 1 | 2 | B.4 | 0.002208 |
M | 2 | A2V | gCA | gTG | 1 | 2 | B.4 | 0.002208 |
M | 2 | A2S | Gca | Tca | 2 | 2 | C.36.3 | 0.001134 |
M | 2 | A2V | gCa | gTa | 2 | 2 | K.2 | 0.08 |
M | 2 | A2del | GCA | --- | 2 | 2 | P.1 | 0.000032 |
M | 2 | A2P | Gca | Cca | 2 | 2 | P.1 | 0.000032 |
M | 2 | A2T | Gca | Aca | 2 | 2 | P.1.15 | 0.000465 |
M | 2 | A2S | Gca | Tca | 2 | 2 | P.1.15 | 0.000465 |
M | 2 | A2S | Gca | Tca | 2 | 2 | P.1.16 | 0.000748 |
M | 2 | A2S | Gca | Tca | 2 | 2 | P.1.2 | 0.002312 |
M | 2 | A2P | Gca | Cca | 2 | 2 | P.1.9 | 0.009615 |
M | 2 | A2V | gCa | gTa | 2 | 2 | P.2 | 0.000373 |
M | 2 | A2S | Gca | Tca | 2 | 2 | XA | 0.044444 |
M | 2 | A2E | gCa | gAa | 1 | 1 | 0.055556 | |
M | 2 | A2A | gcA | gcG | 1 | 1 | 0.055556 | |
M | 2 | A2S | Gca | Tca | 1 | 1 | A.2.2 | 0.001689 |
M | 2 | A2A | gcA | gcG | 1 | 1 | A.2.5 | 0.000499 |
M | 2 | A2S | Gca | Tca | 1 | 1 | A.2.5.2 | 0.001572 |
M | 2 | A2S | Gca | Tca | 1 | 1 | A.21 | 0.00277 |
M | 2 | A2A | gcA | gcT | 1 | 1 | A.21 | 0.00277 |
M | 2 | A2S | Gca | Tca | 1 | 1 | A.23.1 | 0.000704 |
M | 2 | A2V | gCa | gTa | 1 | 1 | A.27 | 0.001656 |
M | 2 | A2A | gcA | gcT | 1 | 1 | AU.2 | 0.002421 |
M | 2 | A2del | GCA | --- | 1 | 1 | AY.100 | 0.000046 |
M | 2 | A2V | gCa | gTa | 1 | 1 | AY.101 | 0.00049 |
M | 2 | A2A | gcA | gcT | 1 | 1 | AY.101 | 0.00049 |
M | 2 | A2E | gCa | gAa | 1 | 1 | AY.101 | 0.00049 |
M | 2 | A2T | Gca | Aca | 1 | 1 | AY.102 | 0.000027 |
M | 2 | A2E | gCa | gAa | 1 | 1 | AY.102 | 0.000027 |
M | 2 | A2E | gCa | gAa | 1 | 1 | AY.103 | 0.000006 |
M | 2 | A2V | gCa | gTa | 1 | 1 | AY.104 | 0.001984 |
M | 2 | A2S | Gca | Tca | 1 | 1 | AY.105 | 0.000643 |
M | 2 | A2A | gcA | gcT | 1 | 1 | AY.106 | 0.000335 |
M | 2 | A2S | Gca | Tca | 1 | 1 | AY.107 | 0.000466 |
M | 2 | A2del | GCA | --- | 1 | 1 | AY.108 | 0.001103 |
M | 2 | A2E | gCa | gAa | 1 | 1 | AY.110 | 0.000113 |
M | 2 | A2A | gcA | gcG | 1 | 1 | AY.111 | 0.000183 |
M | 2 | A2T | Gca | Aca | 1 | 1 | AY.113 | 0.000142 |
M | 2 | A2S | Gca | Tca | 1 | 1 | AY.115 | 0.005208 |
M | 2 | A2V | gCa | gTa | 1 | 1 | AY.116 | 0.000287 |
M | 2 | A2T | Gca | Aca | 1 | 1 | AY.116 | 0.000287 |
M | 2 | A2V | gCa | gTa | 1 | 1 | AY.116.1 | 0.000311 |
M | 2 | A2del | GCA | --- | 1 | 1 | AY.118 | 0.000063 |
M | 2 | A2T | Gca | Aca | 1 | 1 | AY.118 | 0.000063 |
M | 2 | A2A | gcA | gcT | 1 | 1 | AY.12 | 0.000316 |
M | 2 | A2V | gCa | gTa | 1 | 1 | AY.12 | 0.000316 |
M | 2 | A2A | gcA | gcT | 1 | 1 | AY.120 | 0.000037 |
M | 2 | A2del | GCA | --- | 1 | 1 | AY.120 | 0.000037 |
M | 2 | A2V | gCa | gTa | 1 | 1 | AY.120 | 0.000037 |
M | 2 | A2S | Gca | Tca | 1 | 1 | AY.120.1 | 0.000321 |
M | 2 | A2A | gcA | gcG | 1 | 1 | AY.120.1 | 0.000321 |
M | 2 | A2V | gCa | gTa | 1 | 1 | AY.120.2 | 0.001285 |
M | 2 | A2T | Gca | Aca | 1 | 1 | AY.121 | 0.000135 |
M | 2 | A2P | Gca | Cca | 1 | 1 | AY.13 | 0.000161 |
M | 2 | A2T | Gca | Aca | 1 | 1 | AY.16 | 0.00038 |
M | 2 | A2V | gCa | gTa | 1 | 1 | AY.2 | 0.000356 |
M | 2 | A2S | Gca | Tca | 1 | 1 | AY.2 | 0.000356 |
M | 2 | A2E | gCa | gAa | 1 | 1 | AY.20 | 0.000039 |
M | 2 | A2V | gCa | gTa | 1 | 1 | AY.24 | 0.000431 |
M | 2 | A2del | GCA | --- | 1 | 1 | AY.25 | 0.000006 |
M | 2 | A2A | gcA | gcT | 1 | 1 | AY.27 | 0.000065 |
M | 2 | A2A | gcA | gcG | 1 | 1 | AY.28 | 0.00189 |
M | 2 | A2E | gCa | gAa | 1 | 1 | AY.29 | 0.000016 |
M | 2 | A2G | gCa | gGa | 1 | 1 | AY.29 | 0.000016 |
M | 2 | A2T | Gca | Aca | 1 | 1 | AY.29 | 0.000016 |
M | 2 | A2V | gCa | gTa | 1 | 1 | AY.29.1 | 0.000221 |
M | 2 | A2A | gcA | gcT | 1 | 1 | AY.3.1 | 0.000085 |
M | 2 | A2A | gcA | gcG | 1 | 1 | AY.33 | 0.000067 |
M | 2 | A2S | Gca | Tca | 1 | 1 | AY.35 | 0.000233 |
M | 2 | A2V | gCa | gTa | 1 | 1 | AY.36 | 0.000148 |
M | 2 | A2del1 | gcA | gc- | 1 | 1 | AY.4 | 0.000002 |
M | 2 | A2P | Gca | Cca | 1 | 1 | AY.4.2 | 0.000022 |
M | 2 | A2A | gcA | gcT | 1 | 1 | AY.4.2.1 | 0.000149 |
M | 2 | A2S | Gca | Tca | 1 | 1 | AY.4.4 | 0.000409 |
M | 2 | A2V | gCa | gTa | 1 | 1 | AY.40 | 0.000964 |
M | 2 | A2A | gcA | gcT | 1 | 1 | AY.41 | 0.000294 |
M | 2 | A2G | gCa | gGa | 1 | 1 | AY.43 | 0.000004 |
M | 2 | A2del1 | GcA | Ac- | 1 | 1 | AY.44 | 0.000006 |
M | 2 | A2del | GCA | --- | 1 | 1 | AY.44 | 0.000006 |
M | 2 | A2T | Gca | Aca | 1 | 1 | AY.46.1 | 0.001027 |
M | 2 | A2A | gcA | gcT | 1 | 1 | AY.46.1 | 0.001027 |
M | 2 | A2del | GCA | --- | 1 | 1 | AY.46.2 | 0.000635 |
M | 2 | A2V | gCa | gTa | 1 | 1 | AY.46.2 | 0.000635 |
M | 2 | A2S | Gca | Tca | 1 | 1 | AY.46.4 | 0.000165 |
M | 2 | A2V | gCa | gTa | 1 | 1 | AY.46.5 | 0.000198 |
M | 2 | A2A | gcA | gcG | 1 | 1 | AY.48 | 0.000465 |
M | 2 | A2E | gCa | gAa | 1 | 1 | AY.5 | 0.000021 |
M | 2 | A2T | Gca | Aca | 1 | 1 | AY.5 | 0.000021 |
M | 2 | A2S | Gca | Tca | 1 | 1 | AY.50 | 0.000799 |
M | 2 | A2V | gCa | gTa | 1 | 1 | AY.53 | 0.000288 |
M | 2 | A2S | Gca | Tca | 1 | 1 | AY.53 | 0.000288 |
M | 2 | A2S | Gca | Tca | 1 | 1 | AY.58 | 0.000907 |
M | 2 | A2A | gcA | gcT | 1 | 1 | AY.59 | 0.00053 |
M | 2 | A2A | gcA | gcT | 1 | 1 | AY.6 | 0.000041 |
M | 2 | A2V | gCa | gTa | 1 | 1 | AY.63 | 0.000387 |
M | 2 | A2A | gcA | gcT | 1 | 1 | AY.63 | 0.000387 |
M | 2 | A2V | gCa | gTa | 1 | 1 | AY.64 | 0.000595 |
M | 2 | A2S | Gca | Tca | 1 | 1 | AY.64 | 0.000595 |
M | 2 | A2T | Gca | Aca | 1 | 1 | AY.65 | 0.000533 |
M | 2 | A2S | Gca | Tca | 1 | 1 | AY.65 | 0.000533 |
M | 2 | A2S | Gca | Tca | 1 | 1 | AY.67 | 0.000464 |
M | 2 | A2del | GCA | --- | 1 | 1 | AY.68 | 0.000274 |
M | 2 | A2V | gCa | gTa | 1 | 1 | AY.68 | 0.000274 |
M | 2 | A2A | gcA | gcT | 1 | 1 | AY.7 | 0.000196 |
M | 2 | A2V | gCa | gTa | 1 | 1 | AY.7.1 | 0.000113 |
M | 2 | A2V | gCa | gTa | 1 | 1 | AY.71 | 0.000475 |
M | 2 | A2V | gCa | gTa | 1 | 1 | AY.72 | 0.001361 |
M | 2 | A2A | gcA | gcT | 1 | 1 | AY.74 | 0.000116 |
M | 2 | A2A | gcA | gcC | 1 | 1 | AY.75.1 | 0.00018 |
M | 2 | A2S | Gca | Tca | 1 | 1 | AY.77 | 0.001127 |
M | 2 | A2V | gCa | gTa | 1 | 1 | AY.80 | 0.001129 |
M | 2 | A2A | gcA | gcT | 1 | 1 | AY.81 | 0.001992 |
M | 2 | A2S | Gca | Tca | 1 | 1 | AY.86 | 0.00083 |
M | 2 | A2V | gCa | gTa | 1 | 1 | AY.87 | 0.000833 |
M | 2 | A2del | GCA | --- | 1 | 1 | AY.9 | 0.000068 |
M | 2 | A2T | Gca | Aca | 1 | 1 | AY.92 | 0.000287 |
M | 2 | A2S | Gca | Tca | 1 | 1 | AY.95 | 0.000761 |
M | 2 | A2A | gcA | gcT | 1 | 1 | AY.98.1 | 0.000048 |
M | 2 | A2S | Gca | Tca | 1 | 1 | AY.99.1 | 0.001553 |
M | 2 | A2S | Gca | Tca | 1 | 1 | AZ.1 | 0.000867 |
M | 2 | A2V | gCa | gTa | 1 | 1 | AZ.5 | 0.003509 |
M | 2 | A2del1 | gcA | gc- | 1 | 1 | B | 0.000128 |
M | 2 | A2I | GCa | ATa | 1 | 1 | B.1 | 0.000009 |
M | 2 | A2G | gCa | gGa | 1 | 1 | B.1 | 0.000009 |
M | 2 | A2E | gCA | gAG | 1 | 1 | B.1 | 0.000009 |
M | 2 | A2P | Gca | Cca | 1 | 1 | B.1.1 | 0.000018 |
M | 2 | A2del | GCA | --- | 1 | 1 | B.1.1.139 | 0.022727 |
M | 2 | A2P | Gca | Cca | 1 | 1 | B.1.1.153 | 0.001095 |
M | 2 | A2V | gCa | gTa | 1 | 1 | B.1.1.170 | 0.001247 |
M | 2 | A2S | Gca | Tca | 1 | 1 | B.1.1.189 | 0.001513 |
M | 2 | A2V | gCa | gTa | 1 | 1 | B.1.1.192 | 0.002309 |
M | 2 | A2V | gCa | gTa | 1 | 1 | B.1.1.214 | 0.000055 |
M | 2 | A2P | Gca | Cca | 1 | 1 | B.1.1.214 | 0.000055 |
M | 2 | A2V | gCa | gTa | 1 | 1 | B.1.1.220 | 0.001859 |
M | 2 | A2T | Gca | Aca | 1 | 1 | B.1.1.222 | 0.000204 |
M | 2 | A2L | GCa | TTa | 1 | 1 | B.1.1.229 | 0.005747 |
M | 2 | A2V | gCa | gTa | 1 | 1 | B.1.1.243 | 0.004082 |
M | 2 | A2A | gcA | gcG | 1 | 1 | B.1.1.25 | 0.000569 |
M | 2 | A2P | Gca | Cca | 1 | 1 | B.1.1.258 | 0.003257 |
M | 2 | A2V | gCa | gTa | 1 | 1 | B.1.1.26 | 0.005236 |
M | 2 | A2S | Gca | Tca | 1 | 1 | B.1.1.269 | 0.001353 |
M | 2 | A2del | GCA | --- | 1 | 1 | B.1.1.288 | 0.001916 |
M | 2 | A2A | gcA | gcG | 1 | 1 | B.1.1.306 | 0.000438 |
M | 2 | A2I | GCa | ATa | 1 | 1 | B.1.1.306 | 0.000438 |
M | 2 | A2V | gCa | gTa | 1 | 1 | B.1.1.31 | 0.066667 |
M | 2 | A2S | Gca | Tca | 1 | 1 | B.1.1.311 | 0.000358 |
M | 2 | A2V | gCa | gTa | 1 | 1 | B.1.1.312 | 0.001912 |
M | 2 | A2S | Gca | Tca | 1 | 1 | B.1.1.312 | 0.001912 |
M | 2 | A2A | gcA | gcG | 1 | 1 | B.1.1.312 | 0.001912 |
M | 2 | A2S | Gca | Tca | 1 | 1 | B.1.1.317 | 0.000412 |
M | 2 | A2T | Gca | Aca | 1 | 1 | B.1.1.318 | 0.000302 |
M | 2 | A2A | gcA | gcT | 1 | 1 | B.1.1.326 | 0.001761 |
M | 2 | A2S | Gca | Tca | 1 | 1 | B.1.1.332 | 0.03125 |
M | 2 | A2A | gcA | gcT | 1 | 1 | B.1.1.337 | 0.003597 |
M | 2 | A2A | gcA | gcT | 1 | 1 | B.1.1.369 | 0.000446 |
M | 2 | A2S | Gca | Tca | 1 | 1 | B.1.1.37 | 0.000193 |
M | 2 | A2S | Gca | Tca | 1 | 1 | B.1.1.389 | 0.006061 |
M | 2 | A2S | Gca | Tca | 1 | 1 | B.1.1.39 | 0.00051 |
M | 2 | A2A | gcA | gcT | 1 | 1 | B.1.1.398 | 0.003226 |
M | 2 | A2S | Gca | Tca | 1 | 1 | B.1.1.409 | 0.002833 |
M | 2 | A2T | Gca | Aca | 1 | 1 | B.1.1.409 | 0.002833 |
M | 2 | A2S | Gca | Tca | 1 | 1 | B.1.1.413 | 0.006897 |
M | 2 | A2S | Gca | Tca | 1 | 1 | B.1.1.416 | 0.000905 |
M | 2 | A2S | Gca | Tca | 1 | 1 | B.1.1.417 | 0.002703 |
M | 2 | A2A | gcA | gcT | 1 | 1 | B.1.1.430 | 0.041667 |
M | 2 | A2V | gCa | gTa | 1 | 1 | B.1.1.435 | 0.034483 |
M | 2 | A2S | Gca | Tca | 1 | 1 | B.1.1.449 | 0.022727 |
M | 2 | A2S | Gca | Tca | 1 | 1 | B.1.1.486 | 0.001577 |
M | 2 | A2S | Gca | Tca | 1 | 1 | B.1.1.507 | 0.008696 |
M | 2 | A2S | Gca | Tca | 1 | 1 | B.1.1.58 | 0.005376 |
M | 2 | A2V | gCa | gTa | 1 | 1 | B.1.1.58 | 0.005376 |
M | 2 | A2S | Gca | Tca | 1 | 1 | B.1.1.61 | 0.008772 |
M | 2 | A2A | gcA | gcC | 1 | 1 | B.1.1.63 | 0.000386 |
M | 2 | A2L | GCa | TTa | 1 | 1 | B.1.1.7 | 0.000001 |
M | 2 | A2S | Gca | Tca | 1 | 1 | B.1.1.70 | 0.000341 |
M | 2 | A2T | Gca | Aca | 1 | 1 | B.1.1.70 | 0.000341 |
M | 2 | A2S | Gca | Tca | 1 | 1 | B.1.110.3 | 0.000718 |
M | 2 | A2V | gCa | gTa | 1 | 1 | B.1.111 | 0.001175 |
M | 2 | A2S | Gca | Tca | 1 | 1 | B.1.12 | 0.008 |
M | 2 | A2S | Gca | Tca | 1 | 1 | B.1.128 | 0.000635 |
M | 2 | A2P | Gca | Cca | 1 | 1 | B.1.128 | 0.000635 |
M | 2 | A2del | GCA | --- | 1 | 1 | B.1.139 | 0.000733 |
M | 2 | A2V | gCa | gTa | 1 | 1 | B.1.146 | 0.004237 |
M | 2 | A2V | gCa | gTa | 1 | 1 | B.1.147 | 0.000756 |
M | 2 | A2S | Gca | Tca | 1 | 1 | B.1.147 | 0.000756 |
M | 2 | A2V | gCa | gTa | 1 | 1 | B.1.160.28 | 0.002924 |
M | 2 | A2S | Gca | Tca | 1 | 1 | B.1.160.28 | 0.002924 |
M | 2 | A2V | gCa | gTa | 1 | 1 | B.1.160.8 | 0.001289 |
M | 2 | A2S | Gca | Tca | 1 | 1 | B.1.160.9 | 0.007194 |
M | 2 | A2del | GCA | --- | 1 | 1 | B.1.177 | 0.000013 |
M | 2 | A2del | GCA | --- | 1 | 1 | B.1.177.16 | 0.000664 |
M | 2 | A2del | GCA | --- | 1 | 1 | B.1.177.17 | 0.000821 |
M | 2 | A2V | gCa | gTa | 1 | 1 | B.1.177.41 | 0.0025 |
M | 2 | A2A | gcA | gcT | 1 | 1 | B.1.177.45 | 0.000381 |
M | 2 | A2S | Gca | Tca | 1 | 1 | B.1.177.5 | 0.001242 |
M | 2 | A2V | gCa | gTa | 1 | 1 | B.1.177.51 | 0.004566 |
M | 2 | A2A | gcA | gcT | 1 | 1 | B.1.177.55 | 0.002331 |
M | 2 | A2V | gCa | gTa | 1 | 1 | B.1.177.57 | 0.000281 |
M | 2 | A2S | Gca | Tca | 1 | 1 | B.1.177.63 | 0.002703 |
M | 2 | A2V | gCa | gTa | 1 | 1 | B.1.177.65 | 0.000665 |
M | 2 | A2S | Gca | Tca | 1 | 1 | B.1.177.65 | 0.000665 |
M | 2 | A2A | gcA | gcT | 1 | 1 | B.1.177.73 | 0.000566 |
M | 2 | A2S | Gca | Tca | 1 | 1 | B.1.177.75 | 0.001041 |
M | 2 | A2S | Gca | Tca | 1 | 1 | B.1.177.81 | 0.000189 |
M | 2 | A2A | gcA | gcT | 1 | 1 | B.1.177.86 | 0.000183 |
M | 2 | A2S | Gca | Tca | 1 | 1 | B.1.177.87 | 0.000728 |
M | 2 | A2del | GCA | --- | 1 | 1 | B.1.177.87 | 0.000728 |
M | 2 | A2del1 | gcA | gc- | 1 | 1 | B.1.2 | 0.000009 |
M | 2 | A2G | gCa | gGa | 1 | 1 | B.1.210 | 0.002132 |
M | 2 | A2S | Gca | Tca | 1 | 1 | B.1.210 | 0.002132 |
M | 2 | A2V | gCa | gTa | 1 | 1 | B.1.214.2 | 0.0006 |
M | 2 | A2S | Gca | Tca | 1 | 1 | B.1.219 | 0.009434 |
M | 2 | A2V | gCa | gTa | 1 | 1 | B.1.223 | 0.002778 |
M | 2 | A2T | Gca | Aca | 1 | 1 | B.1.227 | 0.047619 |
M | 2 | A2S | Gca | Tca | 1 | 1 | B.1.229 | 0.009709 |
M | 2 | A2P | Gca | Cca | 1 | 1 | B.1.234 | 0.000132 |
M | 2 | A2V | gCa | gTa | 1 | 1 | B.1.236 | 0.002053 |
M | 2 | A2A | gcA | gcT | 1 | 1 | B.1.237 | 0.004975 |
M | 2 | A2S | Gca | Tca | 1 | 1 | B.1.240 | 0.000216 |
M | 2 | A2T | Gca | Aca | 1 | 1 | B.1.243 | 0.00007 |
M | 2 | A2del1 | gCa | g-a | 1 | 1 | B.1.243 | 0.00007 |
M | 2 | A2P | Gca | Cca | 1 | 1 | B.1.243 | 0.00007 |
M | 2 | A2P | Gca | Cca | 1 | 1 | B.1.258 | 0.000067 |
M | 2 | A2A | gcA | gcT | 1 | 1 | B.1.258 | 0.000067 |
M | 2 | A2T | Gca | Aca | 1 | 1 | B.1.258.17 | 0.000104 |
M | 2 | A2G | gCa | gGa | 1 | 1 | B.1.258.6 | 0.019608 |
M | 2 | A2V | gCa | gTa | 1 | 1 | B.1.265 | 0.001271 |
M | 2 | A2S | Gca | Tca | 1 | 1 | B.1.291 | 0.019231 |
M | 2 | A2S | Gca | Tca | 1 | 1 | B.1.305 | 0.002151 |
M | 2 | A2A | gcA | gcT | 1 | 1 | B.1.311 | 0.000275 |
M | 2 | A2S | Gca | Tca | 1 | 1 | B.1.329 | 0.000608 |
M | 2 | A2V | gCa | gTa | 1 | 1 | B.1.335 | 0.010309 |
M | 2 | A2S | Gca | Tca | 1 | 1 | B.1.336 | 0.002439 |
M | 2 | A2S | Gca | Tca | 1 | 1 | B.1.346 | 0.001311 |
M | 2 | A2del1 | gCa | g-a | 1 | 1 | B.1.349 | 0.000715 |
M | 2 | A2del1 | gCa | g-a | 1 | 1 | B.1.351 | 0.00003 |
M | 2 | A2T | Gca | Aca | 1 | 1 | B.1.351 | 0.00003 |
M | 2 | A2A | gcA | gcT | 1 | 1 | B.1.351.2 | 0.000303 |
M | 2 | A2E | gCa | gAa | 1 | 1 | B.1.351.2 | 0.000303 |
M | 2 | A2S | Gca | Tca | 1 | 1 | B.1.351.5 | 0.0006 |
M | 2 | A2V | gCa | gTa | 1 | 1 | B.1.356 | 0.001727 |
M | 2 | A2V | gCa | gTa | 1 | 1 | B.1.36 | 0.000146 |
M | 2 | A2S | Gca | Tca | 1 | 1 | B.1.36.1 | 0.00114 |
M | 2 | A2A | gcA | gcT | 1 | 1 | B.1.36.1 | 0.00114 |
M | 2 | A2V | gCa | gTa | 1 | 1 | B.1.36.29 | 0.000517 |
M | 2 | A2S | Gca | Tca | 1 | 1 | B.1.36.35 | 0.002604 |
M | 2 | A2V | gCa | gTa | 1 | 1 | B.1.361 | 0.001289 |
M | 2 | A2V | gCa | gTa | 1 | 1 | B.1.362 | 0.001541 |
M | 2 | A2A | gcA | gcT | 1 | 1 | B.1.397 | 0.004854 |
M | 2 | A2S | Gca | Tca | 1 | 1 | B.1.399 | 0.001934 |
M | 2 | A2A | gcA | gcT | 1 | 1 | B.1.404 | 0.001302 |
M | 2 | A2S | Gca | Tca | 1 | 1 | B.1.408 | 0.00369 |
M | 2 | A2S | Gca | Tca | 1 | 1 | B.1.411 | 0.003704 |
M | 2 | A2V | gCa | gTa | 1 | 1 | B.1.416 | 0.001269 |
M | 2 | A2V | gCa | gTa | 1 | 1 | B.1.428 | 0.00102 |
M | 2 | A2P | Gca | Cca | 1 | 1 | B.1.429 | 0.000024 |
M | 2 | A2S | Gca | Tca | 1 | 1 | B.1.432 | 0.011236 |
M | 2 | A2V | gCa | gTa | 1 | 1 | B.1.433 | 0.003195 |
M | 2 | A2S | Gca | Tca | 1 | 1 | B.1.436 | 0.001029 |
M | 2 | A2V | gCa | gTa | 1 | 1 | B.1.437 | 0.020833 |
M | 2 | A2A | gcA | gcT | 1 | 1 | B.1.44 | 0.008333 |
M | 2 | A2V | gCa | gTa | 1 | 1 | B.1.453 | 0.003236 |
M | 2 | A2A | gcA | gcT | 1 | 1 | B.1.459 | 0.004082 |
M | 2 | A2A | gcA | gcT | 1 | 1 | B.1.463 | 0.008065 |
M | 2 | A2V | gCa | gTa | 1 | 1 | B.1.466.2 | 0.000391 |
M | 2 | A2T | Gca | Aca | 1 | 1 | B.1.466.2 | 0.000391 |
M | 2 | A2V | gCa | gTa | 1 | 1 | B.1.505 | 0.004386 |
M | 2 | A2V | gCa | gTa | 1 | 1 | B.1.517 | 0.000427 |
M | 2 | A2S | Gca | Tca | 1 | 1 | B.1.551 | 0.00129 |
M | 2 | A2V | gCa | gTa | 1 | 1 | B.1.558 | 0.004566 |
M | 2 | A2del | GCA | --- | 1 | 1 | B.1.561 | 0.000397 |
M | 2 | A2S | Gca | Tca | 1 | 1 | B.1.564 | 0.000426 |
M | 2 | A2E | gCa | gAa | 1 | 1 | B.1.564 | 0.000426 |
M | 2 | A2T | Gca | Aca | 1 | 1 | B.1.567 | 0.003333 |
M | 2 | A2S | Gca | Tca | 1 | 1 | B.1.568 | 0.001111 |
M | 2 | A2S | Gca | Tca | 1 | 1 | B.1.571 | 0.009709 |
M | 2 | A2S | Gca | Tca | 1 | 1 | B.1.575.1 | 0.002439 |
M | 2 | A2S | Gca | Tca | 1 | 1 | B.1.587 | 0.001898 |
M | 2 | A2V | gCa | gTa | 1 | 1 | B.1.595 | 0.000261 |
M | 2 | A2P | Gca | Cca | 1 | 1 | B.1.596 | 0.000087 |
M | 2 | A2T | Gca | Aca | 1 | 1 | B.1.596 | 0.000087 |
M | 2 | A2A | gcA | gcT | 1 | 1 | B.1.596.1 | 0.009346 |
M | 2 | A2S | Gca | Tca | 1 | 1 | B.1.599 | 0.00365 |
M | 2 | A2S | Gca | Tca | 1 | 1 | B.1.601 | 0.030303 |
M | 2 | A2L | GCa | TTa | 1 | 1 | B.1.617.2 | 0.000004 |
M | 2 | A2del1 | gcA | gc- | 1 | 1 | B.1.617.2 | 0.000004 |
M | 2 | A2S | Gca | Tca | 1 | 1 | B.1.619.1 | 0.000641 |
M | 2 | A2A | gcA | gcC | 1 | 1 | B.1.621 | 0.000089 |
M | 2 | A2V | gCa | gTa | 1 | 1 | B.1.623 | 0.000536 |
M | 2 | A2V | gCa | gTa | 1 | 1 | B.1.627 | 0.00202 |
M | 2 | A2A | gcA | gcG | 1 | 1 | B.1.630 | 0.005236 |
M | 2 | A2S | Gca | Tca | 1 | 1 | B.1.630 | 0.005236 |
M | 2 | A2T | Gca | Aca | 1 | 1 | B.1.637 | 0.000073 |
M | 2 | A2E | gCa | gAa | 1 | 1 | B.1.78 | 0.008547 |
M | 2 | A2V | gCa | gTa | 1 | 1 | B.11 | 0.005128 |
M | 2 | A2V | gCa | gTa | 1 | 1 | B.27 | 0.015385 |
M | 2 | A2S | Gca | Tca | 1 | 1 | B.27 | 0.015385 |
M | 2 | A2V | gCa | gTa | 1 | 1 | B.3.1 | 0.001658 |
M | 2 | A2A | gcA | gcG | 1 | 1 | B.4 | 0.002208 |
M | 2 | A2A | gcA | gcT | 1 | 1 | B.4.8 | 0.071429 |
M | 2 | A2S | Gca | Tca | 1 | 1 | B.55 | 0.00295 |
M | 2 | A2A | gcA | gcT | 1 | 1 | B.6 | 0.00091 |
M | 2 | A2S | Gca | Tca | 1 | 1 | B.6.6 | 0.000889 |
M | 2 | A2G | gCa | gGa | 1 | 1 | B.60 | 0.015873 |
M | 2 | A2V | gCa | gTa | 1 | 1 | C.1 | 0.002392 |
M | 2 | A2S | Gca | Tca | 1 | 1 | C.13 | 0.025641 |
M | 2 | A2V | gCa | gTa | 1 | 1 | C.16 | 0.00106 |
M | 2 | A2V | gCa | gTa | 1 | 1 | C.27 | 0.018519 |
M | 2 | A2S | Gca | Tca | 1 | 1 | C.30 | 0.001727 |
M | 2 | A2A | gcA | gcG | 1 | 1 | C.35 | 0.000774 |
M | 2 | A2T | Gca | Aca | 1 | 1 | C.36.3 | 0.000567 |
M | 2 | A2V | gCa | gTa | 1 | 1 | C.39 | 0.018868 |
M | 2 | A2V | gCa | gTa | 1 | 1 | D.2 | 0.000075 |
M | 2 | A2T | Gca | Aca | 1 | 1 | D.2 | 0.000075 |
M | 2 | A2del1 | GcA | Tc- | 1 | 1 | P.1 | 0.000016 |
M | 2 | A2L | GCa | TTa | 1 | 1 | P.1 | 0.000016 |
M | 2 | A2G | gCa | gGa | 1 | 1 | P.1.1 | 0.000318 |
M | 2 | A2T | Gca | Aca | 1 | 1 | P.1.12 | 0.000484 |
M | 2 | A2A | gcA | gcT | 1 | 1 | P.1.15 | 0.000232 |
M | 2 | A2del | GCA | --- | 1 | 1 | P.1.15 | 0.000232 |
M | 2 | A2S | Gca | Tca | 1 | 1 | P.1.17.1 | 0.000875 |
M | 2 | A2V | gCa | gTa | 1 | 1 | P.1.2 | 0.001156 |
M | 2 | A2S | Gca | Tca | 1 | 1 | P.1.7 | 0.000319 |
M | 2 | A2T | Gca | Aca | 1 | 1 | P.1.7 | 0.000319 |
M | 2 | A2S | Gca | Tca | 1 | 1 | P.1.8 | 0.004785 |
M | 2 | A2A | gcA | gcT | 1 | 1 | P.2 | 0.000187 |
M | 2 | A2S | Gca | Tca | 1 | 1 | Q.3 | 0.000145 |
M | 2 | A2S | Gca | Tca | 1 | 1 | Q.4 | 0.000455 |
M | 2 | A2S | Gca | Tca | 1 | 1 | Q.8 | 0.000165 |
M | 2 | A2S | Gca | Tca | 1 | 1 | R.1 | 0.00009 |
M | 2 | A2T | Gca | Aca | 1 | 1 | R.1 | 0.00009 |
M | 2 | A2A | gcA | gcG | 1 | 1 | W.4 | 0.001351 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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