CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = M : CodonNum = 197

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
M197S197NnonsynaGtaAt1649716497127111-27113
M197S197SsynagTagC255255127111-27113
M197S197deldelAGT---178178127111-27113
M197S197TnonsynaGtaCt112112127111-27113
M197S197InonsynaGtaTt6767127111-27113
M197S197RnonsynagTagG88127111-27113
M197S197GnonsynAgtGgt760.85714327111-27113
M197S197GnonsynAgTGgG710.14285727111-27113
M197S197YnonsynAGtTAt55127111-27113
M197S197CnonsynAgtTgt44127111-27113
M197S197del1delagTag-22127111-27113
M197S197del2delaGTa--11127111-27113
M197S197VnonsynAGTGTC11127111-27113

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
M197S197NaGtaAt1649716497All0.003155
M197S197NaGtaAt1549915499AY.750.868291
M197S197NaGtaAt709709B.1.617.20.00267
M197S197SagTagC255255All0.000049
M197S197delAGT---178178All0.000034
M197S197delAGT---147147B.1.177.210.011241
M197S197TaGtaCt112112All0.000021
M197S197NaGtaAt101101AY.1180.006328
M197S197IaGtaTt6767All0.000013
M197S197SagTagC4646AY.250.000277
M197S197SagTagC4040B.1.617.20.000151
M197S197SagTagC2929B.1.1.70.000026
M197S197SagTagC2727AY.40.000042
M197S197SagTagC2323AY.440.00014
M197S197TaGtaCt2121AY.40.000033
M197S197delAGT---2020B.1.1.70.000018
M197S197TaGtaCt1414B.1.1.70.000013
M197S197NaGtaAt1313AY.1030.000081
M197S197NaGtaAt1313AY.250.000078
M197S197NaGtaAt1313AY.620.005664
M197S197NaGtaAt1212A.20.007942
M197S197IaGtaTt1111B.1.1.70.00001
M197S197IaGtaTt1010AY.1180.000626
M197S197IaGtaTt1010AY.40.000016
M197S197NaGtaAt99AY.40.000014
M197S197NaGtaAt99AY.650.004797
M197S197NaGtaAt99B0.00115
M197S197SagTagC99B.1.177.170.007389
M197S197RagTagG88All0.000002
M197S197NaGtaAt88AY.440.000049
M197S197NaGtaAt88B.10.000073
M197S197TaGtaCt88B.1.1770.000105
M197S197GAgtGgt67All0.000001
M197S197GAgTGgG17All0
M197S197NaGtaAt77AY.260.000198
M197S197TaGtaCt77AY.430.000031
M197S197NaGtaAt66AY.130.000966
M197S197NaGtaAt66AY.75.10.001082
M197S197IaGtaTt66B.10.000055
M197S197RagTagG66B.1.1.2050.022305
M197S197NaGtaAt66B.1.36.350.015625
M197S197TaGtaCt66B.1.4160.007614
M197S197SagTagC66C.370.000696
M197S197YAGtTAt55All0.000001
M197S197SagTagC55AY.1020.000133
M197S197TaGtaCt55AY.1180.000313
M197S197SagTagC55AY.30.00005
M197S197NaGtaAt55AY.430.000022
M197S197NaGtaAt55AY.610.000524
M197S197SagTagC55AY.90.000338
M197S197SagTagC55B.1.1.5190.000199
M197S197TaGtaCt55C.390.09434
M197S197CAgtTgt44All0.000001
M197S197SagTagC44AY.1000.000184
M197S197SagTagC44AY.430.000018
M197S197NaGtaAt44AY.520.003257
M197S197TaGtaCt44AY.750.000224
M197S197YAGtTAt44AY.750.000224
M197S197NaGtaAt44AY.930.001092
M197S197delAGT---44B.10.000037
M197S197TaGtaCt44B.10.000037
M197S197NaGtaAt44B.1.10.000073
M197S197TaGtaCt44B.1.10.000073
M197S197SagTagC44B.1.20.000035
M197S197TaGtaCt44B.1.20.000035
M197S197NaGtaAt44B.1.2410.003247
M197S197NaGtaAt33AY.1000.000138
M197S197SagTagC33AY.1030.000019
M197S197IaGtaTt33AY.250.000018
M197S197SagTagC33AY.290.000047
M197S197NaGtaAt33AY.470.000093
M197S197SagTagC33AY.5.40.00083
M197S197NaGtaAt33AY.9.20.00011
M197S197NaGtaAt33AY.980.000237
M197S197TaGtaCt33B.1.6200.002838
M197S197del1agTag-22All0
M197S197NaGtaAt22AY.1170.000169
M197S197SagTagC22AY.1190.000071
M197S197SagTagC22AY.230.000139
M197S197NaGtaAt22AY.240.000862
M197S197CAgtTgt22AY.430.000009
M197S197GAgtGgt12AY.430.000004
M197S197GAgTGgG12AY.430.000004
M197S197TaGtaCt22AY.440.000012
M197S197NaGtaAt22AY.46.60.000144
M197S197IaGtaTt22AY.470.000062
M197S197NaGtaAt22AY.480.00093
M197S197SagTagC22AY.50.000041
M197S197NaGtaAt22AY.540.000191
M197S197delAGT---22AY.750.000112
M197S197IaGtaTt22AY.750.000112
M197S197GAgtGgt22B.10.000018
M197S197SagTagC22B.1.10.000036
M197S197IaGtaTt22B.1.177.40.000422
M197S197SagTagC22B.1.258.170.000208
M197S197IaGtaTt22D.20.00015
M197S197SagTagC22Q.80.00033
M197S197delAGT---11A0.000387
M197S197VAGTGTC11All0
M197S197del2aGTa--11All0
M197S197NaGtaAt11AY.100.00053
M197S197CAgtTgt11AY.100.00053
M197S197IaGtaTt11AY.1030.000006
M197S197TaGtaCt11AY.1030.000006
M197S197SagTagC11AY.1060.000335
M197S197NaGtaAt11AY.1100.000113
M197S197NaGtaAt11AY.1110.000183
M197S197SagTagC11AY.1170.000085
M197S197delAGT---11AY.1180.000063
M197S197YAGtTAt11AY.1180.000063
M197S197VAGTGTC11AY.1190.000035
M197S197SagTagC11AY.1200.000037
M197S197NaGtaAt11AY.120.2.10.000498
M197S197NaGtaAt11AY.16.10.00047
M197S197SagTagC11AY.200.000039
M197S197NaGtaAt11AY.230.00007
M197S197TaGtaCt11AY.250.000006
M197S197SagTagC11AY.260.000028
M197S197IaGtaTt11AY.270.000065
M197S197SagTagC11AY.270.000065
M197S197SagTagC11AY.29.10.000221
M197S197NaGtaAt11AY.30.00001
M197S197SagTagC11AY.330.000067
M197S197IaGtaTt11AY.390.000025
M197S197TaGtaCt11AY.4.10.000737
M197S197TaGtaCt11AY.4.20.000022
M197S197IaGtaTt11AY.4.50.000107
M197S197SagTagC11AY.400.000964
M197S197delAGT---11AY.430.000004
M197S197IaGtaTt11AY.430.000004
M197S197RagTagG11AY.430.000004
M197S197IaGtaTt11AY.440.000006
M197S197TaGtaCt11AY.46.10.001027
M197S197TaGtaCt11AY.46.60.000072
M197S197NaGtaAt11AY.50.000021
M197S197NaGtaAt11AY.600.000938
M197S197NaGtaAt11AY.690.000187
M197S197TaGtaCt11AY.700.000209
M197S197del1agTag-11AY.710.000475
M197S197SagTagC11AY.740.000116
M197S197del2aGTa--11AY.750.000056
M197S197SagTagC11AY.840.000437
M197S197NaGtaAt11AY.920.000287
M197S197NaGtaAt11AY.950.000761
M197S197TaGtaCt11B0.000128
M197S197SagTagC11B.10.000009
M197S197GAgtGgt11B.1.10.000018
M197S197IaGtaTt11B.1.10.000018
M197S197TaGtaCt11B.1.1.1530.001095
M197S197IaGtaTt11B.1.1.1610.003534
M197S197SagTagC11B.1.1.2140.000055
M197S197SagTagC11B.1.1.3060.000438
M197S197delAGT---11B.1.1.4200.001006
M197S197IaGtaTt11B.1.1.5190.00004
M197S197RagTagG11B.1.1.70.000001
M197S197NaGtaAt11B.1.1.70.000001
M197S197NaGtaAt11B.1.1600.000031
M197S197NaGtaAt11B.1.1770.000013
M197S197TaGtaCt11B.1.177.210.000076
M197S197TaGtaCt11B.1.177.730.000566
M197S197SagTagC11B.1.177.820.000477
M197S197TaGtaCt11B.1.177.840.006667
M197S197GAgtGgt11B.1.177.860.000183
M197S197NaGtaAt11B.1.20.000009
M197S197IaGtaTt11B.1.20.000009
M197S197TaGtaCt11B.1.2210.000071
M197S197TaGtaCt11B.1.2340.000132
M197S197TaGtaCt11B.1.258.110.000396
M197S197delAGT---11B.1.258.110.000396
M197S197TaGtaCt11B.1.2650.001271
M197S197IaGtaTt11B.1.351.20.000303
M197S197TaGtaCt11B.1.360.000146
M197S197TaGtaCt11B.1.3690.000285
M197S197TaGtaCt11B.1.3780.006849
M197S197NaGtaAt11B.1.3780.006849
M197S197NaGtaAt11B.1.3960.000706
M197S197SagTagC11B.1.3960.000706
M197S197TaGtaCt11B.1.4270.00005
M197S197SagTagC11B.1.4290.000024
M197S197IaGtaTt11B.1.4290.000024
M197S197IaGtaTt11B.1.466.20.000391
M197S197SagTagC11B.1.5260.000024
M197S197del1agTag-11B.1.5640.000426
M197S197IaGtaTt11B.1.5640.000426
M197S197NaGtaAt11B.1.5750.000303
M197S197GAgtGgt11B.1.5760.000907
M197S197IaGtaTt11B.1.5960.000087
M197S197TaGtaCt11B.1.5960.000087
M197S197SagTagC11B.1.5960.000087
M197S197SagTagC11B.1.6090.000479
M197S197NaGtaAt11B.1.617.10.000129
M197S197IaGtaTt11B.1.6210.000089
M197S197TaGtaCt11B.1.6370.000073
M197S197IaGtaTt11B.570.015152
M197S197SagTagC11D.20.000075
M197S197CAgtTgt11D.20.000075
M197S197NaGtaAt11P.10.000016
M197S197SagTagC11P.10.000016
M197S197TaGtaCt11P.10.000016
M197S197IaGtaTt11P.10.000016
M197S197TaGtaCt11P.1.20.001156
M197S197TaGtaCt11P.20.000187
M197S197IaGtaTt11R.10.00009