CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = M : CodonNum = 196

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
M196Y196YsyntaCtaT15671567127108-27110
M196Y196deldelTAC---178178127108-27110
M196Y196HnonsynTacCac1515127108-27110
M196Y196FnonsyntActTc12110.91666727108-27110
M196Y196FnonsyntACtTT1210.083333327108-27110
M196Y196XnonsyntaCtaA860.7527108-27110
M196Y196XnonsyntaCtaG820.2527108-27110
M196Y196CnonsyntActGc44127108-27110
M196Y196del1deltaCta-22127108-27110
M196Y196SnonsyntActCc22127108-27110
M196Y196VnonsynTACGTT210.527108-27110
M196Y196VnonsynTAcGTc210.527108-27110
M196Y196DnonsynTaCGaT210.527108-27110
M196Y196DnonsynTacGac210.527108-27110
M196Y196TnonsynTACACA11127108-27110
M196Y196del2delTAc--c11127108-27110
M196Y196KnonsynTaCAaA11127108-27110

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
M196Y196YtaCtaT15671567All0.0003
M196Y196YtaCtaT323323B.1.1.70.000289
M196Y196YtaCtaT226226B.1.1.460.9869
M196Y196delTAC---178178All0.000034
M196Y196delTAC---147147B.1.177.210.011241
M196Y196YtaCtaT100100B.1.617.20.000377
M196Y196YtaCtaT7474AY.40.000115
M196Y196YtaCtaT5757AY.440.000347
M196Y196YtaCtaT5252B.10.000476
M196Y196YtaCtaT5151P.10.000803
M196Y196YtaCtaT5050AY.30.000497
M196Y196YtaCtaT4747AY.250.000283
M196Y196YtaCtaT4242AY.430.000186
M196Y196YtaCtaT3535AY.750.001961
M196Y196YtaCtaT3434AY.1030.000211
M196Y196YtaCtaT2929AY.1200.001078
M196Y196YtaCtaT2929Q.10.003663
M196Y196YtaCtaT2525B.1.20.00022
M196Y196delTAC---2020B.1.1.70.000018
M196Y196YtaCtaT1919AY.470.000591
M196Y196YtaCtaT1717B.1.5600.078704
M196Y196YtaCtaT1616AY.50.00033
M196Y196HTacCac1515All0.000003
M196Y196YtaCtaT1515AY.260.000425
M196Y196YtaCtaT1414B.1.4290.000329
M196Y196YtaCtaT1313B.1.5260.000306
M196Y196YtaCtaT1313P.1.70.004151
M196Y196FtActTc1112All0.000002
M196Y196FtACtTT112All0
M196Y196YtaCtaT1212B.1.10.000218
M196Y196YtaCtaT1010B.1.2430.000696
M196Y196YtaCtaT99AY.390.000222
M196Y196YtaCtaT99B.1.4270.000454
M196Y196XtaCtaA68All0.000001
M196Y196XtaCtaG28All0
M196Y196YtaCtaT88AY.330.000534
M196Y196YtaCtaT88AY.9.10.00067
M196Y196YtaCtaT77B.1.1.700.002387
M196Y196YtaCtaT77B.1.5880.006369
M196Y196YtaCtaT66AY.1020.000159
M196Y196YtaCtaT66AY.610.000629
M196Y196YtaCtaT66AY.980.000474
M196Y196YtaCtaT66B.1.1.2910.004454
M196Y196YtaCtaT66B.1.4260.006054
M196Y196YtaCtaT66B.1.4970.001889
M196Y196YtaCtaT66C.37.10.015707
M196Y196YtaCtaT55AY.1000.00023
M196Y196YtaCtaT55AY.200.000194
M196Y196YtaCtaT55B.1.1.5190.000199
M196Y196CtActGc44All0.000001
M196Y196YtaCtaT44AY.90.00027
M196Y196YtaCtaT44AY.9.20.000147
M196Y196HTacCac44B.10.000037
M196Y196delTAC---44B.10.000037
M196Y196YtaCtaT44B.1.1.4340.001394
M196Y196YtaCtaT44B.1.1600.000125
M196Y196YtaCtaT44B.1.1770.000053
M196Y196YtaCtaT44B.1.177.620.004768
M196Y196YtaCtaT44B.1.36.80.004
M196Y196YtaCtaT44D.20.0003
M196Y196FtActTc230.111111
M196Y196FtACtTT130.055556
M196Y196YtaCtaT33AY.340.000291
M196Y196YtaCtaT33AY.360.000445
M196Y196YtaCtaT33AY.4.20.000065
M196Y196XtaCtaA23B.10.000018
M196Y196XtaCtaG13B.10.000009
M196Y196YtaCtaT33B.1.1.1700.003741
M196Y196YtaCtaT33B.1.1.2220.000612
M196Y196YtaCtaT33B.1.177.720.010169
M196Y196YtaCtaT33B.1.177.770.002179
M196Y196YtaCtaT33B.1.360.000438
M196Y196YtaCtaT33B.1.617.10.000387
M196Y196YtaCtaT33B.1.6370.000219
M196Y196YtaCtaT33R.10.00027
M196Y196DTaCGaT120.055556
M196Y196DTacGac120.055556
M196Y196VTAcGTc120.055556
M196Y196VTACGTT120.055556
M196Y196StActCc22All0
M196Y196del1taCta-22All0
M196Y196DTacGac12All0
M196Y196VTACGTT12All0
M196Y196VTAcGTc12All0
M196Y196DTaCGaT12All0
M196Y196HTacCac22AY.1030.000012
M196Y196YtaCtaT22AY.1190.000071
M196Y196YtaCtaT22AY.230.000139
M196Y196YtaCtaT22AY.650.001066
M196Y196YtaCtaT22AY.710.00095
M196Y196delTAC---22AY.750.000112
M196Y196YtaCtaT22AY.75.10.000361
M196Y196YtaCtaT22AY.98.10.000097
M196Y196YtaCtaT22B.1.1.370.000386
M196Y196HTacCac22B.1.1.70.000002
M196Y196YtaCtaT22B.1.1280.001271
M196Y196YtaCtaT22B.1.2400.000431
M196Y196YtaCtaT22B.1.3510.000059
M196Y196YtaCtaT22B.1.5610.000794
M196Y196del1taCta-22B.1.6270.00404
M196Y196FtActTc22B.3.10.003317
M196Y196YtaCtaT22P.1.140.000096
M196Y196YtaCtaT110.055556
M196Y196delTAC---11A0.000387
M196Y196YtaCtaT11A.2.20.001689
M196Y196YtaCtaT11A.2.40.003367
M196Y196YtaCtaT11AD.20.000219
M196Y196YtaCtaT11AE.30.032258
M196Y196del2TAc--c11All0
M196Y196KTaCAaA11All0
M196Y196TTACACA11All0
M196Y196YtaCtaT11AY.1010.00049
M196Y196YtaCtaT11AY.1130.000142
M196Y196YtaCtaT11AY.1180.000063
M196Y196delTAC---11AY.1180.000063
M196Y196TTACACA11AY.1190.000035
M196Y196YtaCtaT11AY.120.000316
M196Y196YtaCtaT11AY.140.000088
M196Y196YtaCtaT11AY.160.00038
M196Y196YtaCtaT11AY.16.10.00047
M196Y196YtaCtaT11AY.23.10.000417
M196Y196HTacCac11AY.250.000006
M196Y196FtActTc11AY.250.000006
M196Y196YtaCtaT11AY.270.000065
M196Y196CtActGc11AY.30.00001
M196Y196YtaCtaT11AY.3.10.000085
M196Y196YtaCtaT11AY.320.000532
M196Y196XtaCtaA11AY.390.000025
M196Y196YtaCtaT11AY.39.10.00004
M196Y196StActCc11AY.40.000002
M196Y196YtaCtaT11AY.4.2.10.000149
M196Y196YtaCtaT11AY.4.50.000107
M196Y196del2TAc--c11AY.420.00004
M196Y196YtaCtaT11AY.420.00004
M196Y196delTAC---11AY.430.000004
M196Y196HTacCac11AY.440.000006
M196Y196CtActGc11AY.440.000006
M196Y196YtaCtaT11AY.5.40.000277
M196Y196YtaCtaT11AY.670.000464
M196Y196YtaCtaT11AY.680.000274
M196Y196StActCc11AY.710.000475
M196Y196YtaCtaT11AY.850.000427
M196Y196YtaCtaT11AY.920.000287
M196Y196YtaCtaT11AY.99.10.001553
M196Y196YtaCtaT11B0.000128
M196Y196HTacCac11B0.000128
M196Y196FtActTc11B.10.000009
M196Y196CtActGc11B.10.000009
M196Y196FtActTc11B.1.10.000018
M196Y196XtaCtaA11B.1.10.000018
M196Y196KTaCAaA11B.1.10.000018
M196Y196YtaCtaT11B.1.1.2200.001859
M196Y196YtaCtaT11B.1.1.2560.013699
M196Y196YtaCtaT11B.1.1.2580.003257
M196Y196YtaCtaT11B.1.1.3170.000412
M196Y196YtaCtaT11B.1.1.3690.000446
M196Y196YtaCtaT11B.1.1.4130.006897
M196Y196delTAC---11B.1.1.4200.001006
M196Y196YtaCtaT11B.1.1.5260.003546
M196Y196FtActTc11B.1.1.70.000001
M196Y196XtaCtaA11B.1.1.700.000341
M196Y196FtActTc11B.1.1040.00369
M196Y196YtaCtaT11B.1.1110.001175
M196Y196HTacCac11B.1.1390.000733
M196Y196YtaCtaT11B.1.160.230.004831
M196Y196YtaCtaT11B.1.160.300.002976
M196Y196YtaCtaT11B.1.177.560.000668
M196Y196YtaCtaT11B.1.177.570.000281
M196Y196YtaCtaT11B.1.177.750.001041
M196Y196YtaCtaT11B.1.177.870.000728
M196Y196YtaCtaT11B.1.1890.004292
M196Y196HTacCac11B.1.20.000009
M196Y196YtaCtaT11B.1.230.006061
M196Y196YtaCtaT11B.1.2340.000132
M196Y196YtaCtaT11B.1.2360.002053
M196Y196YtaCtaT11B.1.2580.000067
M196Y196delTAC---11B.1.258.110.000396
M196Y196YtaCtaT11B.1.258.170.000104
M196Y196YtaCtaT11B.1.258.70.001912
M196Y196YtaCtaT11B.1.2890.00266
M196Y196YtaCtaT11B.1.2980.002114
M196Y196YtaCtaT11B.1.351.30.000876
M196Y196YtaCtaT11B.1.36.10.00114
M196Y196YtaCtaT11B.1.36.100.004785
M196Y196YtaCtaT11B.1.36.200.016949
M196Y196YtaCtaT11B.1.3990.001934
M196Y196YtaCtaT11B.1.4160.001269
M196Y196YtaCtaT11B.1.428.20.033333
M196Y196YtaCtaT11B.1.438.10.000107
M196Y196CtActGc11B.1.5250.000113
M196Y196FtActTc11B.1.5610.000397
M196Y196HTacCac11B.1.5640.000426
M196Y196YtaCtaT11B.1.5650.00081
M196Y196XtaCtaA11B.1.5670.003333
M196Y196XtaCtaG11B.1.617.20.000004
M196Y196FtActTc11B.1.617.20.000004
M196Y196YtaCtaT11B.1.6270.00202
M196Y196YtaCtaT11B.6.60.000889
M196Y196YtaCtaT11C.180.002591
M196Y196YtaCtaT11C.350.000774
M196Y196YtaCtaT11C.370.000116
M196Y196HTacCac11D.20.000075
M196Y196YtaCtaT11L.20.011364
M196Y196YtaCtaT11N.50.001767
M196Y196YtaCtaT11P.1.100.000269
M196Y196YtaCtaT11P.1.150.000232
M196Y196YtaCtaT11P.1.40.000977
M196Y196YtaCtaT11P.1.60.001946