CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = M : CodonNum = 190 & Codon = gaT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
M190D190DsyngaCgaT39973997127090-27092

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
M190D190DgaCgaT39973997All0.000764
M190D190DgaCgaT765765B.1.1.70.000685
M190D190DgaCgaT463463B.1.36.211
M190D190DgaCgaT294294AY.40.000458
M190D190DgaCgaT225225B.1.617.20.000847
M190D190DgaCgaT152152AY.430.000673
M190D190DgaCgaT120120AY.250.000722
M190D190DgaCgaT117117B.10.001072
M190D190DgaCgaT117117B.1.3960.082569
M190D190DgaCgaT106106AY.440.000645
M190D190DgaCgaT104104B.1.1770.001369
M190D190DgaCgaT101101B.1.20.000889
M190D190DgaCgaT8484AY.9.20.003085
M190D190DgaCgaT7878AY.470.002426
M190D190DgaCgaT7474AY.1000.003404
M190D190DgaCgaT5454P.10.000851
M190D190DgaCgaT4040AY.1030.000248
M190D190DgaCgaT4040AY.1100.004508
M190D190DgaCgaT4040Q.10.005053
M190D190DgaCgaT3939AY.200.001516
M190D190DgaCgaT3838AY.450.004624
M190D190DgaCgaT3434AY.3.10.002899
M190D190DgaCgaT3333AY.50.000681
M190D190DgaCgaT3131AY.30.000308
M190D190DgaCgaT3131B.1.1.1890.046899
M190D190DgaCgaT2929AY.4.20.000629
M190D190DgaCgaT2828B.1.4290.000659
M190D190DgaCgaT2727B.1.1600.000842
M190D190DgaCgaT2424B.1.10.000435
M190D190DgaCgaT1919AY.980.001501
M190D190DgaCgaT1818B.1.2340.002375
M190D190DgaCgaT1818B.1.36.390.039911
M190D190DgaCgaT1818B.1.5750.005461
M190D190DgaCgaT1717AY.290.000268
M190D190DgaCgaT1717AY.390.00042
M190D190DgaCgaT1717B.1.36.170.008399
M190D190DgaCgaT1616AY.300.006332
M190D190DgaCgaT1616B.1.1.330.006734
M190D190DgaCgaT1515B.1.5260.000353
M190D190DgaCgaT1414AY.1020.000371
M190D190DgaCgaT1414AY.360.002075
M190D190DgaCgaT1414B.1.2650.017789
M190D190DgaCgaT1414B.1.5960.00122
M190D190DgaCgaT1313AY.330.000868
M190D190DgaCgaT1313B.1.4270.000656
M190D190DgaCgaT1212AY.1180.000752
M190D190DgaCgaT1212AY.46.20.007624
M190D190DgaCgaT1212B.1.2580.000799
M190D190DgaCgaT1212B.1.5250.001358
M190D190DgaCgaT1111AY.1190.000388
M190D190DgaCgaT1010A.2.5.20.015723
M190D190DgaCgaT1010B.1.3510.000297
M190D190DgaCgaT99AY.460.000937
M190D190DgaCgaT99B.1.1.2700.092784
M190D190DgaCgaT88AY.750.000448
M190D190DgaCgaT88B.1.1.1170.07767
M190D190DgaCgaT88B.1.6210.000708
M190D190DgaCgaT77AY.1170.000592
M190D190DgaCgaT77AY.1200.00026
M190D190DgaCgaT77AY.260.000198
M190D190DgaCgaT77AY.420.000282
M190D190DgaCgaT77AY.60.000288
M190D190DgaCgaT77AY.9.10.000586
M190D190DgaCgaT77AY.98.10.000339
M190D190DgaCgaT77B.1.214.20.004197
M190D190DgaCgaT66B.1.1.4130.041379
M190D190DgaCgaT66B.1.3110.001647
M190D190DgaCgaT55AY.130.000805
M190D190DgaCgaT55AY.540.000477
M190D190DgaCgaT55B0.000639
M190D190DgaCgaT55B.1.1.3420.3125
M190D190DgaCgaT44AY.370.001264
M190D190DgaCgaT44AY.610.000419
M190D190DgaCgaT44AY.690.000747
M190D190DgaCgaT44AY.770.00451
M190D190DgaCgaT44B.1.1.2160.003562
M190D190DgaCgaT44B.1.1.3480.003185
M190D190DgaCgaT44B.1.2370.0199
M190D190DgaCgaT44B.1.36.290.002069
M190D190DgaCgaT44B.1.5560.030075
M190D190DgaCgaT44B.1.5950.001044
M190D190DgaCgaT44B.1.617.10.000516
M190D190DgaCgaT44C.370.000464
M190D190DgaCgaT33AY.270.000194
M190D190DgaCgaT33AY.530.000863
M190D190DgaCgaT33AY.550.002752
M190D190DgaCgaT33AY.700.000626
M190D190DgaCgaT33B.1.1.5190.000119
M190D190DgaCgaT33B.1.1.630.001157
M190D190DgaCgaT33B.1.1640.044776
M190D190DgaCgaT33B.1.177.60.00293
M190D190DgaCgaT33B.1.177.790.007026
M190D190DgaCgaT33B.1.2430.000209
M190D190DgaCgaT33B.1.3200.003736
M190D190DgaCgaT33B.1.360.000438
M190D190DgaCgaT33P.1.10.000953
M190D190DgaCgaT33P.1.140.000143
M190D190DgaCgaT33P.1.150.000697
M190D190DgaCgaT22AE.80.000978
M190D190DgaCgaT22AY.1060.00067
M190D190DgaCgaT22AY.1130.000285
M190D190DgaCgaT22AY.1210.000271
M190D190DgaCgaT22AY.240.000862
M190D190DgaCgaT22AY.620.000871
M190D190DgaCgaT22AY.780.003082
M190D190DgaCgaT22AY.850.000854
M190D190DgaCgaT22AY.920.000575
M190D190DgaCgaT22B.1.1.1330.016949
M190D190DgaCgaT22B.1.1.1530.002191
M190D190DgaCgaT22B.1.1.2140.000111
M190D190DgaCgaT22B.1.1.2880.003831
M190D190DgaCgaT22B.1.1.3060.000877
M190D190DgaCgaT22B.1.1.3160.00185
M190D190DgaCgaT22B.1.1.4530.016949
M190D190DgaCgaT22B.1.1.4620.017241
M190D190DgaCgaT22B.1.1.700.000682
M190D190DgaCgaT22B.1.177.40.000422
M190D190DgaCgaT22B.1.177.440.001038
M190D190DgaCgaT22B.1.177.530.004785
M190D190DgaCgaT22B.1.177.810.000379
M190D190DgaCgaT22B.1.177.860.000367
M190D190DgaCgaT22B.1.2390.002442
M190D190DgaCgaT22B.1.2400.000431
M190D190DgaCgaT22B.1.2600.006689
M190D190DgaCgaT22B.1.3490.00143
M190D190DgaCgaT22B.1.351.20.000605
M190D190DgaCgaT22B.1.36.160.002849
M190D190DgaCgaT22B.1.36.190.018519
M190D190DgaCgaT22B.1.3750.001639
M190D190DgaCgaT22B.1.5820.000981
M190D190DgaCgaT22B.1.5970.009259
M190D190DgaCgaT22C.320.046512
M190D190DgaCgaT22P.20.000373
M190D190DgaCgaT22R.10.00018
M190D190DgaCgaT110.055556
M190D190DgaCgaT11A.23.10.000704
M190D190DgaCgaT11AE.50.018519
M190D190DgaCgaT11AY.10.000396
M190D190DgaCgaT11AY.1070.000466
M190D190DgaCgaT11AY.1110.000183
M190D190DgaCgaT11AY.1160.000287
M190D190DgaCgaT11AY.16.10.00047
M190D190DgaCgaT11AY.220.002092
M190D190DgaCgaT11AY.230.00007
M190D190DgaCgaT11AY.29.10.000221
M190D190DgaCgaT11AY.34.10.00051
M190D190DgaCgaT11AY.39.10.00004
M190D190DgaCgaT11AY.4.50.000107
M190D190DgaCgaT11AY.46.60.000072
M190D190DgaCgaT11AY.480.000465
M190D190DgaCgaT11AY.590.00053
M190D190DgaCgaT11AY.680.000274
M190D190DgaCgaT11AY.710.000475
M190D190DgaCgaT11AY.75.10.00018
M190D190DgaCgaT11AY.790.001211
M190D190DgaCgaT11AY.930.000273
M190D190DgaCgaT11AZ.10.000867
M190D190DgaCgaT11AZ.20.000821
M190D190DgaCgaT11AZ.50.003509
M190D190DgaCgaT11B.1.1.10.000327
M190D190DgaCgaT11B.1.1.2220.000204
M190D190DgaCgaT11B.1.1.2410.00207
M190D190DgaCgaT11B.1.1.280.000311
M190D190DgaCgaT11B.1.1.2840.000107
M190D190DgaCgaT11B.1.1.2970.002237
M190D190DgaCgaT11B.1.1.370.000193
M190D190DgaCgaT11B.1.1.3740.002375
M190D190DgaCgaT11B.1.1.3980.003226
M190D190DgaCgaT11B.1.1.4160.000905
M190D190DgaCgaT11B.1.1.4190.007407
M190D190DgaCgaT11B.1.1.4320.001266
M190D190DgaCgaT11B.1.1.80.003584
M190D190DgaCgaT11B.1.1.980.018519
M190D190DgaCgaT11B.1.1.990.02381
M190D190DgaCgaT11B.1.1150.021739
M190D190DgaCgaT11B.1.1280.000635
M190D190DgaCgaT11B.1.177.160.000664
M190D190DgaCgaT11B.1.177.200.001517
M190D190DgaCgaT11B.1.177.210.000076
M190D190DgaCgaT11B.1.177.600.000218
M190D190DgaCgaT11B.1.177.650.000665
M190D190DgaCgaT11B.1.177.80.000752
M190D190DgaCgaT11B.1.177.870.000728
M190D190DgaCgaT11B.1.177.90.001332
M190D190DgaCgaT11B.1.2100.002132
M190D190DgaCgaT11B.1.2320.000537
M190D190DgaCgaT11B.1.2410.000812
M190D190DgaCgaT11B.1.2800.007143
M190D190DgaCgaT11B.1.3340.018182
M190D190DgaCgaT11B.1.3460.001311
M190D190DgaCgaT11B.1.36.100.004785
M190D190DgaCgaT11B.1.36.180.00042
M190D190DgaCgaT11B.1.36.80.001
M190D190DgaCgaT11B.1.3610.001289
M190D190DgaCgaT11B.1.3690.000285
M190D190DgaCgaT11B.1.3950.007042
M190D190DgaCgaT11B.1.4010.008197
M190D190DgaCgaT11B.1.4160.001269
M190D190DgaCgaT11B.1.4280.00102
M190D190DgaCgaT11B.1.438.10.000107
M190D190DgaCgaT11B.1.4680.005714
M190D190DgaCgaT11B.1.4970.000315
M190D190DgaCgaT11B.1.5480.035714
M190D190DgaCgaT11B.1.5610.000397
M190D190DgaCgaT11B.1.5650.00081
M190D190DgaCgaT11B.1.575.10.002439
M190D190DgaCgaT11B.1.5770.000687
M190D190DgaCgaT11B.1.6230.000536
M190D190DgaCgaT11B.1.6280.000352
M190D190DgaCgaT11B.1.6370.000073
M190D190DgaCgaT11C.160.00106
M190D190DgaCgaT11P.1.120.000484
M190D190DgaCgaT11P.1.170.000162
M190D190DgaCgaT11P.1.40.000977
M190D190DgaCgaT11Q.30.000145
M190D190DgaCgaT11Q.50.016949

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.