CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = M : CodonNum = 181

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
M181L181LsynttGttA13648910.65322627063-27065
M181L181LsynTtgCtg13644590.3365127063-27065
M181L181LsynTtGCtT1364140.010263927063-27065
M181L181deldelTTG---170170127063-27065
M181L181FnonsynttGttT76740.97368427063-27065
M181L181FnonsynttGttC7620.026315827063-27065
M181L181SnonsyntTgtCg77127063-27065
M181L181VnonsynTtgGtg77127063-27065
M181L181del1delTtg-tg740.57142927063-27065
M181L181del1delttGtt-730.42857127063-27065
M181L181WnonsyntTgtGg33127063-27065
M181L181XnonsyntTgtAg33127063-27065
M181L181InonsynTtGAtT33127063-27065
M181L181MnonsynTtgAtg22127063-27065
M181L181RnonsynTTGCGA22127063-27065
M181L181del2deltTGt--11127063-27065

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
M181L181LttGttA8911364All0.00017
M181L181LTtgCtg4591364All0.000088
M181L181LTtGCtT141364All0.000003
M181L181LttGttA529578B.1.1.70.000474
M181L181LTtgCtg49578B.1.1.70.000044
M181L181delTTG---170170All0.000033
M181L181delTTG---133133B.1.177.210.010171
M181L181LTtgCtg115116B.1.2580.007653
M181L181LttGttA1116B.1.2580.000067
M181L181LTtgCtg105107P.10.001654
M181L181LttGttA2107P.10.000032
M181L181FttGttT7476All0.000014
M181L181FttGttC276All0
M181L181LttGttA4073B.1.1770.000527
M181L181LTtgCtg2173B.1.1770.000277
M181L181LTtGCtT1273B.1.1770.000158
M181L181LttGttA5252B.1.177.730.029445
M181L181LttGttA3945AY.40.000061
M181L181LTtgCtg645AY.40.000009
M181L181LTtgCtg3341B.1.617.20.000124
M181L181LttGttA841B.1.617.20.00003
M181L181LttGttA3537AY.30.000348
M181L181LTtgCtg237AY.30.00002
M181L181LttGttA3636B.1.243.10.8
M181L181LttGttA2020B.1.1.1590.093458
M181L181FttGttT1515B.1.1.70.000013
M181L181LttGttA814AY.90.000541
M181L181LTtgCtg614AY.90.000406
M181L181delTTG---1414B.1.1.70.000013
M181L181LTtgCtg1214B.1.3510.000357
M181L181LttGttA214B.1.3510.000059
M181L181LttGttA1414B.1.4970.004407
M181L181LTtgCtg1113AY.430.000049
M181L181LttGttA213AY.430.000009
M181L181LttGttA1212AY.9.20.000441
M181L181LttGttA1212B.1.2340.001583
M181L181LTtgCtg1011AY.290.000158
M181L181LttGttA111AY.290.000016
M181L181FttGttT1111AY.430.000049
M181L181LTtgCtg611B.1.4290.000141
M181L181LttGttA311B.1.4290.000071
M181L181LTtGCtT211B.1.4290.000047
M181L181LTtgCtg68AY.250.000036
M181L181LttGttA28AY.250.000012
M181L181LttGttA68AY.440.000037
M181L181LTtgCtg28AY.440.000012
M181L181LttGttA58B.10.000046
M181L181LTtgCtg38B.10.000027
M181L181StTgtCg77All0.000001
M181L181VTtgGtg77All0.000001
M181L181del1Ttg-tg47All0.000001
M181L181del1ttGtt-37All0.000001
M181L181LttGttA77AY.230.000488
M181L181LttGttA57B.1.20.000044
M181L181LTtgCtg27B.1.20.000018
M181L181LttGttA66B.1.177.440.003114
M181L181LTtgCtg46B.1.617.10.000516
M181L181LttGttA26B.1.617.10.000258
M181L181LttGttA45AY.1000.000184
M181L181LTtgCtg15AY.1000.000046
M181L181FttGttT55AY.40.000008
M181L181LTtgCtg45AY.98.10.000194
M181L181LttGttA15AY.98.10.000048
M181L181FttGttT55B.1.177.210.000382
M181L181LTtgCtg34AY.1030.000019
M181L181LttGttA14AY.1030.000006
M181L181delTTG---44AY.40.000006
M181L181LTtgCtg44AY.50.000083
M181L181LTtgCtg34B.1.1.370.000579
M181L181LttGttA14B.1.1.370.000193
M181L181LttGttA44B.1.177.720.013559
M181L181LTtgCtg34D.20.000225
M181L181LttGttA14D.20.000075
M181L181LTtgCtg44P.1.140.000191
M181L181FttGttT330.166667
M181L181ITtGAtT33All0.000001
M181L181WtTgtGg33All0.000001
M181L181XtTgtAg33All0.000001
M181L181LttGttA23AY.1170.000169
M181L181LTtgCtg13AY.1170.000085
M181L181LttGttA33AY.1180.000188
M181L181LTtgCtg33AY.470.000093
M181L181delTTG---33B.10.000027
M181L181LttGttA33B.1.177.120.000455
M181L181delTTG---33B.1.617.20.000011
M181L181MTtgAtg220.111111
M181L181ITtGAtT220.111111
M181L181FttGttT22A0.000774
M181L181MTtgAtg22All0
M181L181RTTGCGA22All0
M181L181LTtgCtg22AY.1020.000053
M181L181FttGttT22AY.330.000134
M181L181VTtgGtg22AY.440.000012
M181L181FttGttT22AY.50.000041
M181L181LttGttA22AY.610.00021
M181L181LttGttA22AY.950.001522
M181L181FttGttT22B.10.000018
M181L181StTgtCg22B.10.000018
M181L181LttGttA12B.1.10.000018
M181L181LTtgCtg12B.1.10.000018
M181L181del1Ttg-tg22B.1.1.70.000002
M181L181LTtgCtg22B.1.1.700.000682
M181L181FttGttT22B.1.1770.000026
M181L181LTtgCtg22B.1.3200.002491
M181L181FttGttT22B.1.617.20.000008
M181L181LTtgCtg22C.370.000232
M181L181LTtgCtg22R.10.00018
M181L181LTtgCtg11AG.10.066667
M181L181del2tTGt--11All0
M181L181LTtgCtg11AY.1010.00049
M181L181FttGttT11AY.1030.000006
M181L181delTTG---11AY.1060.000335
M181L181FttGttT11AY.1070.000466
M181L181LttGttA11AY.1130.000142
M181L181LTtgCtg11AY.1140.000231
M181L181LTtgCtg11AY.116.10.000311
M181L181FttGttC11AY.1190.000035
M181L181del1ttGtt-11AY.1200.000037
M181L181delTTG---11AY.1200.000037
M181L181FttGttT11AY.1200.000037
M181L181StTgtCg11AY.1210.000135
M181L181FttGttT11AY.200.000039
M181L181del1ttGtt-11AY.250.000006
M181L181StTgtCg11AY.250.000006
M181L181FttGttT11AY.250.000006
M181L181del1Ttg-tg11AY.260.000028
M181L181FttGttT11AY.260.000028
M181L181VTtgGtg11AY.30.00001
M181L181LTtgCtg11AY.3.10.000085
M181L181LTtgCtg11AY.330.000067
M181L181LttGttA11AY.350.000233
M181L181FttGttT11AY.390.000025
M181L181LttGttA11AY.39.10.00004
M181L181WtTgtGg11AY.39.10.00004
M181L181LttGttA11AY.4.20.000022
M181L181FttGttT11AY.420.00004
M181L181StTgtCg11AY.420.00004
M181L181WtTgtGg11AY.440.000006
M181L181FttGttT11AY.440.000006
M181L181del1Ttg-tg11AY.440.000006
M181L181delTTG---11AY.440.000006
M181L181LttGttA11AY.450.000122
M181L181VTtgGtg11AY.46.20.000635
M181L181FttGttT11AY.46.60.000072
M181L181LTtgCtg11AY.530.000288
M181L181LTtgCtg11AY.650.000533
M181L181delTTG---11AY.750.000056
M181L181FttGttT11AY.770.001127
M181L181XtTgtAg11AY.790.001211
M181L181VTtgGtg11AY.820.001357
M181L181delTTG---11AY.980.000079
M181L181LTtgCtg11AY.99.20.000092
M181L181LttGttA11AZ.20.000821
M181L181LTtgCtg11B0.000128
M181L181FttGttT11B0.000128
M181L181delTTG---11B0.000128
M181L181VTtgGtg11B.10.000009
M181L181del1ttGtt-11B.1.10.000018
M181L181RTTGCGA11B.1.10.000018
M181L181FttGttT11B.1.10.000018
M181L181LTtgCtg11B.1.1.2160.00089
M181L181FttGttT11B.1.1.3110.000358
M181L181LttGttA11B.1.1.3660.015873
M181L181delTTG---11B.1.1.4200.001006
M181L181delTTG---11B.1.1.4480.002033
M181L181FttGttC11B.1.1.470.005348
M181L181LTtgCtg11B.1.1.5070.008696
M181L181LTtgCtg11B.1.1.5190.00004
M181L181del2tTGt--11B.1.1.70.000001
M181L181XtTgtAg11B.1.1.70.000001
M181L181FttGttT11B.1.1.890.006061
M181L181LTtgCtg11B.1.1110.001175
M181L181delTTG---11B.1.1570.002985
M181L181LttGttA11B.1.1600.000031
M181L181LttGttA11B.1.160.160.000929
M181L181LTtgCtg11B.1.160.80.001289
M181L181LttGttA11B.1.177.750.001041
M181L181delTTG---11B.1.177.830.001481
M181L181LttGttA11B.1.1950.005025
M181L181XtTgtAg11B.1.20.000009
M181L181LTtgCtg11B.1.2210.000071
M181L181LTtgCtg11B.1.2430.00007
M181L181RTTGCGA11B.1.258.110.000396
M181L181LttGttA11B.1.3110.000275
M181L181FttGttT11B.1.3590.022727
M181L181LttGttA11B.1.360.000146
M181L181LTtgCtg11B.1.36.220.001208
M181L181delTTG---11B.1.3770.004566
M181L181LTtgCtg11B.1.4160.001269
M181L181LTtgCtg11B.1.4270.00005
M181L181delTTG---11B.1.4270.00005
M181L181WtTgtGg11B.1.4290.000024
M181L181FttGttT11B.1.438.10.000107
M181L181LTtgCtg11B.1.438.10.000107
M181L181LTtgCtg11B.1.5260.000024
M181L181LTtgCtg11B.1.5510.00129
M181L181StTgtCg11B.1.5750.000303
M181L181FttGttT11B.1.5820.000491
M181L181LTtgCtg11B.1.5960.000087
M181L181ITtGAtT11B.1.5960.000087
M181L181VTtgGtg11B.1.617.20.000004
M181L181LTtgCtg11B.1.6210.000089
M181L181LTtgCtg11B.1.930.000934
M181L181LTtgCtg11B.230.002924
M181L181FttGttT11B.60.00091
M181L181LttGttA11B.6.60.000889
M181L181FttGttT11B.6.60.000889
M181L181LttGttA11C.310.017857
M181L181LTtgCtg11C.40.01
M181L181FttGttT11D.20.000075
M181L181StTgtCg11D.20.000075
M181L181LttGttA11P.1.100.000269
M181L181LttGttA11P.1.120.000484
M181L181FttGttT11P.1.150.000232
M181L181LTtgCtg11P.1.160.000374
M181L181delTTG---11Q.20.000613
M181L181FttGttT11R.10.00009