CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = M : CodonNum = 179

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
M179Y179YsyntaCtaT1097810978127057-27059
M179Y179deldelTAC---185185127057-27059
M179Y179NnonsynTacAac1414127057-27059
M179Y179HnonsynTacCac1111127057-27059
M179Y179XnonsyntaCtaA1090.927057-27059
M179Y179XnonsyntaCtaG1010.127057-27059
M179Y179CnonsyntActGc99127057-27059
M179Y179del1delTac-ac840.527057-27059
M179Y179del1deltaCta-830.37527057-27059
M179Y179del1deltAct-c810.12527057-27059
M179Y179del2delTAc--c630.527057-27059
M179Y179del2deltACt--630.527057-27059
M179Y179FnonsyntActTc530.627057-27059
M179Y179FnonsyntACtTT520.427057-27059
M179Y179DnonsynTacGac22127057-27059
M179Y179SnonsyntActCc210.527057-27059
M179Y179SnonsyntACtCT210.527057-27059
M179Y179QnonsynTaCCaA11127057-27059
M179Y179RnonsynTAcCGc11127057-27059

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
M179Y179YtaCtaT1097810978All0.0021
M179Y179YtaCtaT26962696B.1.1.70.002414
M179Y179YtaCtaT14481448B.1.3510.043044
M179Y179YtaCtaT791791D.20.059358
M179Y179YtaCtaT679679AY.40.001057
M179Y179YtaCtaT507507B.1.617.20.001909
M179Y179YtaCtaT387387AY.430.001715
M179Y179YtaCtaT379379AY.540.036137
M179Y179YtaCtaT318318B.1.20.0028
M179Y179YtaCtaT288288AY.390.007117
M179Y179YtaCtaT260260B.1.1600.008109
M179Y179YtaCtaT214214AY.250.001287
M179Y179delTAC---185185All0.000035
M179Y179YtaCtaT168168AY.440.001023
M179Y179YtaCtaT139139P.10.00219
M179Y179YtaCtaT132132AY.1030.00082
M179Y179YtaCtaT127127B.1.5960.011067
M179Y179YtaCtaT121121B.10.001108
M179Y179delTAC---120120B.1.177.210.009176
M179Y179YtaCtaT116116AY.30.001154
M179Y179YtaCtaT106106AY.1180.006641
M179Y179YtaCtaT103103AY.1190.003637
M179Y179YtaCtaT102102B.1.36.120.980769
M179Y179YtaCtaT8787B.1.4290.002047
M179Y179YtaCtaT7272B.1.10.001306
M179Y179YtaCtaT7171AY.470.002208
M179Y179YtaCtaT7171B.1.1770.000935
M179Y179YtaCtaT6767B.1.177.210.005123
M179Y179YtaCtaT5757AY.360.008448
M179Y179YtaCtaT4949B.1.1.10.016008
M179Y179YtaCtaT4848AY.420.001931
M179Y179YtaCtaT4646AY.50.00095
M179Y179YtaCtaT4040B.1.3110.010983
M179Y179YtaCtaT3838B.1.1.3250.974359
M179Y179YtaCtaT3838B.1.1.5190.001509
M179Y179YtaCtaT3737AY.20.013177
M179Y179YtaCtaT3737B.1.5260.00087
M179Y179YtaCtaT3232B.1.617.10.004127
M179Y179YtaCtaT3030AY.70.00588
M179Y179YtaCtaT3030B.1.2340.003958
M179Y179delTAC---2929B.1.1.70.000026
M179Y179YtaCtaT2727AY.1020.000716
M179Y179YtaCtaT2727B.1.1.2140.001497
M179Y179YtaCtaT2626B.1.177.810.004922
M179Y179YtaCtaT2525B.1.6370.001827
M179Y179YtaCtaT2525C.370.002902
M179Y179YtaCtaT2424AY.270.001553
M179Y179YtaCtaT2222AY.4.20.000477
M179Y179YtaCtaT2222AY.980.001738
M179Y179YtaCtaT2121AY.200.000816
M179Y179YtaCtaT1919AY.98.10.00092
M179Y179YtaCtaT1919B.1.1.5170.129252
M179Y179YtaCtaT1616AY.116.10.004983
M179Y179NTacAac1414All0.000003
M179Y179YtaCtaT1414AU.20.033898
M179Y179YtaCtaT1414AY.340.001358
M179Y179YtaCtaT1414AY.46.60.001011
M179Y179YtaCtaT1414B.1.1.1740.047297
M179Y179YtaCtaT1414B.1.1.250.007959
M179Y179YtaCtaT1414B.1.177.860.002568
M179Y179YtaCtaT1414B.1.5970.064815
M179Y179YtaCtaT1313AY.1210.001759
M179Y179YtaCtaT1212AY.140.001056
M179Y179YtaCtaT1212B.1.1.630.00463
M179Y179HTacCac1111All0.000002
M179Y179YtaCtaT1111P.1.140.000526
M179Y179YtaCtaT1111Q.30.001595
M179Y179XtaCtaA910All0.000002
M179Y179XtaCtaG110All0
M179Y179YtaCtaT1010AY.1000.00046
M179Y179YtaCtaT1010AY.1060.003349
M179Y179YtaCtaT1010AY.1200.000372
M179Y179YtaCtaT1010B.1.177.600.002184
M179Y179YtaCtaT1010B.1.2430.000696
M179Y179YtaCtaT1010B.1.4270.000505
M179Y179CtActGc99All0.000002
M179Y179YtaCtaT99AY.290.000142
M179Y179YtaCtaT99AY.460.000937
M179Y179YtaCtaT99AY.46.30.008403
M179Y179YtaCtaT99AY.90.000608
M179Y179YtaCtaT99B.1.360.001313
M179Y179YtaCtaT99B.1.438.10.000965
M179Y179YtaCtaT99P.30.014354
M179Y179del1Tac-ac48All0.000001
M179Y179del1taCta-38All0.000001
M179Y179del1tAct-c18All0
M179Y179YtaCtaT88B.1.1.330.003367
M179Y179YtaCtaT88B.1.2580.000532
M179Y179YtaCtaT88B.1.466.20.00313
M179Y179YtaCtaT88B.1.6210.000708
M179Y179YtaCtaT77AY.750.000392
M179Y179YtaCtaT77B.1.1.1530.007667
M179Y179YtaCtaT77B.1.1.260.036649
M179Y179YtaCtaT77B.1.1.280.002179
M179Y179YtaCtaT77B.1.4090.005469
M179Y179YtaCtaT77B.1.5820.003435
M179Y179YtaCtaT66AE.10.068182
M179Y179del2TAc--c36All0.000001
M179Y179del2tACt--36All0.000001
M179Y179YtaCtaT66AY.1100.000676
M179Y179YtaCtaT66AY.1160.001721
M179Y179YtaCtaT66AY.330.000401
M179Y179YtaCtaT66AY.4.50.000645
M179Y179YtaCtaT66AY.450.00073
M179Y179YtaCtaT66AY.9.20.00022
M179Y179NTacAac66B.1.177.210.000459
M179Y179YtaCtaT66B.1.3240.009631
M179Y179YtaCtaT66B.1.3690.001711
M179Y179FtActTc35All0.000001
M179Y179FtACtTT25All0
M179Y179YtaCtaT55AY.230.000349
M179Y179YtaCtaT55AY.3.10.000426
M179Y179YtaCtaT55AY.380.002496
M179Y179YtaCtaT55AY.39.1.10.003623
M179Y179delTAC---55AY.40.000008
M179Y179delTAC---55AY.430.000022
M179Y179YtaCtaT55AY.60.000206
M179Y179YtaCtaT55AY.99.20.000461
M179Y179YtaCtaT55B.1.1.2220.00102
M179Y179YtaCtaT55B.1.1.3710.052083
M179Y179YtaCtaT55B.1.1.3720.003444
M179Y179YtaCtaT55B.1.36.310.008757
M179Y179YtaCtaT55B.1.3810.039062
M179Y179YtaCtaT55B.1.5250.000566
M179Y179YtaCtaT55B.1.6230.002682
M179Y179YtaCtaT55P.1.30.172414
M179Y179YtaCtaT55P.1.70.001596
M179Y179YtaCtaT44AY.1170.000338
M179Y179YtaCtaT44AY.160.001519
M179Y179YtaCtaT44AY.720.005442
M179Y179YtaCtaT44AY.75.10.000721
M179Y179YtaCtaT44AY.790.004843
M179Y179YtaCtaT44AY.920.001149
M179Y179YtaCtaT44B0.000511
M179Y179delTAC---44B.10.000037
M179Y179YtaCtaT44B.1.160.300.011905
M179Y179YtaCtaT44B.1.2210.000284
M179Y179YtaCtaT44B.1.36.290.002069
M179Y179YtaCtaT44B.1.4990.004202
M179Y179YtaCtaT44P.1.150.000929
M179Y179YtaCtaT44P.20.000747
M179Y179YtaCtaT44Q.10.000505
M179Y179YtaCtaT44Q.80.00066
M179Y179YtaCtaT44R.10.00036
M179Y179YtaCtaT44W.40.005405
M179Y179YtaCtaT33AY.10.001187
M179Y179YtaCtaT33AY.130.000483
M179Y179YtaCtaT33AY.46.20.001906
M179Y179YtaCtaT33AY.5.40.00083
M179Y179YtaCtaT33AY.570.001969
M179Y179YtaCtaT33AY.620.001307
M179Y179YtaCtaT33AY.650.001599
M179Y179YtaCtaT33AY.840.001312
M179Y179YtaCtaT33AY.9.10.000251
M179Y179YtaCtaT33B.1.1.3480.002389
M179Y179YtaCtaT33B.1.177.590.048387
M179Y179YtaCtaT33B.1.177.70.000495
M179Y179YtaCtaT33B.1.177.730.001699
M179Y179YtaCtaT33B.1.2400.000647
M179Y179YtaCtaT33B.1.258.210.023256
M179Y179YtaCtaT33B.1.3750.002459
M179Y179YtaCtaT33B.1.4000.001287
M179Y179YtaCtaT33B.1.4710.008197
M179Y179YtaCtaT33B.1.5510.003871
M179Y179YtaCtaT33B.1.5750.00091
M179Y179YtaCtaT33B.1.6280.001057
M179Y179DTacGac22All0
M179Y179StActCc12All0
M179Y179StACtCT12All0
M179Y179YtaCtaT22AY.1080.002205
M179Y179YtaCtaT22AY.1130.000285
M179Y179YtaCtaT22AY.150.004444
M179Y179NTacAac22AY.250.000012
M179Y179YtaCtaT22AY.320.001065
M179Y179YtaCtaT22AY.350.000466
M179Y179YtaCtaT22AY.410.000588
M179Y179HTacCac22AY.440.000012
M179Y179YtaCtaT22AY.46.10.002053
M179Y179YtaCtaT22AY.46.50.000397
M179Y179YtaCtaT22AY.490.00639
M179Y179YtaCtaT22AY.550.001835
M179Y179YtaCtaT22AY.610.00021
M179Y179YtaCtaT22AY.890.009804
M179Y179YtaCtaT22AZ.20.001642
M179Y179YtaCtaT22B.1.1.2050.007435
M179Y179YtaCtaT22B.1.1.2160.001781
M179Y179YtaCtaT22B.1.1.3160.00185
M179Y179YtaCtaT22B.1.1.3540.008772
M179Y179YtaCtaT22B.1.1.4340.000697
M179Y179YtaCtaT22B.1.1.5180.012658
M179Y179NTacAac22B.1.1.70.000002
M179Y179CtActGc22B.1.1.70.000002
M179Y179YtaCtaT22B.1.1470.001512
M179Y179CtActGc22B.1.1770.000026
M179Y179YtaCtaT22B.1.177.110.003396
M179Y179YtaCtaT22B.1.177.120.000303
M179Y179YtaCtaT22B.1.177.160.001329
M179Y179YtaCtaT22B.1.177.540.001213
M179Y179YtaCtaT22B.1.177.750.002081
M179Y179YtaCtaT22B.1.36.270.001527
M179Y179YtaCtaT22B.1.3670.001585
M179Y179YtaCtaT22B.1.4650.007605
M179Y179YtaCtaT22B.1.4730.038462
M179Y179YtaCtaT22B.1.5950.000522
M179Y179del1taCta-22B.1.617.20.000008
M179Y179YtaCtaT22B.290.007018
M179Y179YtaCtaT22B.400.000729
M179Y179YtaCtaT22C.350.001548
M179Y179YtaCtaT22P.1.160.000748
M179Y179YtaCtaT22Q.20.001227
M179Y179YtaCtaT11A0.000387
M179Y179YtaCtaT11A.2.20.001689
M179Y179YtaCtaT11A.2.30.004739
M179Y179YtaCtaT11A.23.10.000704
M179Y179RTAcCGc11All0
M179Y179QTaCCaA11All0
M179Y179YtaCtaT11AY.100.00053
M179Y179del1tAct-c11AY.1000.000046
M179Y179YtaCtaT11AY.1010.00049
M179Y179delTAC---11AY.1020.000027
M179Y179HTacCac11AY.1030.000006
M179Y179NTacAac11AY.1030.000006
M179Y179QTaCCaA11AY.1130.000142
M179Y179delTAC---11AY.1200.000037
M179Y179YtaCtaT11AY.120.2.10.000498
M179Y179XtaCtaA11AY.250.000006
M179Y179HTacCac11AY.250.000006
M179Y179YtaCtaT11AY.260.000028
M179Y179delTAC---11AY.260.000028
M179Y179XtaCtaA11AY.270.000065
M179Y179HTacCac11AY.30.00001
M179Y179YtaCtaT11AY.300.000396
M179Y179XtaCtaG11AY.330.000067
M179Y179YtaCtaT11AY.39.10.00004
M179Y179YtaCtaT11AY.4.2.10.000149
M179Y179YtaCtaT11AY.4.30.000842
M179Y179CtActGc11AY.430.000004
M179Y179del1Tac-ac11AY.440.000006
M179Y179XtaCtaA11AY.460.000104
M179Y179YtaCtaT11AY.46.40.000165
M179Y179YtaCtaT11AY.480.000465
M179Y179YtaCtaT11AY.5.30.000337
M179Y179delTAC---11AY.5.40.000277
M179Y179YtaCtaT11AY.590.00053
M179Y179StActCc11AY.620.000436
M179Y179YtaCtaT11AY.640.000595
M179Y179del2tACt--11AY.70.000196
M179Y179YtaCtaT11AY.710.000475
M179Y179YtaCtaT11AY.740.000116
M179Y179delTAC---11AY.750.000056
M179Y179YtaCtaT11AY.780.001541
M179Y179YtaCtaT11AY.80.000606
M179Y179delTAC---11AY.870.000833
M179Y179del2tACt--11AY.9.10.000084
M179Y179HTacCac11AY.9.10.000084
M179Y179XtaCtaA11AY.9.20.000037
M179Y179delTAC---11AY.9.20.000037
M179Y179YtaCtaT11AY.990.001049
M179Y179delTAC---11AY.99.20.000092
M179Y179XtaCtaA11AY.99.20.000092
M179Y179delTAC---11B0.000128
M179Y179NTacAac11B.10.000009
M179Y179DTacGac11B.10.000009
M179Y179HTacCac11B.10.000009
M179Y179CtActGc11B.10.000009
M179Y179delTAC---11B.1.10.000018
M179Y179RTAcCGc11B.1.10.000018
M179Y179FtActTc11B.1.10.000018
M179Y179YtaCtaT11B.1.1.1110.014706
M179Y179YtaCtaT11B.1.1.1410.002012
M179Y179YtaCtaT11B.1.1.1610.003534
M179Y179XtaCtaA11B.1.1.1810.004545
M179Y179YtaCtaT11B.1.1.1890.001513
M179Y179YtaCtaT11B.1.1.1980.001468
M179Y179del1Tac-ac11B.1.1.2220.000204
M179Y179YtaCtaT11B.1.1.2310.003096
M179Y179YtaCtaT11B.1.1.2440.015385
M179Y179NTacAac11B.1.1.280.000311
M179Y179YtaCtaT11B.1.1.2840.000107
M179Y179YtaCtaT11B.1.1.3060.000438
M179Y179YtaCtaT11B.1.1.3510.002793
M179Y179del1taCta-11B.1.1.3530.020833
M179Y179YtaCtaT11B.1.1.3730.02381
M179Y179YtaCtaT11B.1.1.3780.007299
M179Y179YtaCtaT11B.1.1.390.00051
M179Y179YtaCtaT11B.1.1.3970.002252
M179Y179YtaCtaT11B.1.1.4040.015873
M179Y179YtaCtaT11B.1.1.4090.002833
M179Y179YtaCtaT11B.1.1.4130.006897
M179Y179YtaCtaT11B.1.1.4190.007407
M179Y179delTAC---11B.1.1.4200.001006
M179Y179del1Tac-ac11B.1.1.4450.037037
M179Y179delTAC---11B.1.1.4480.002033
M179Y179YtaCtaT11B.1.1.5070.008696
M179Y179StACtCT11B.1.1.70.000001
M179Y179HTacCac11B.1.1.70.000001
M179Y179FtACtTT11B.1.1.70.000001
M179Y179YtaCtaT11B.1.1110.001175
M179Y179YtaCtaT11B.1.1490.003425
M179Y179delTAC---11B.1.1570.002985
M179Y179YtaCtaT11B.1.160.250.011111
M179Y179YtaCtaT11B.1.177.190.001431
M179Y179YtaCtaT11B.1.177.200.001517
M179Y179FtACtTT11B.1.177.210.000076
M179Y179del2tACt--11B.1.177.210.000076
M179Y179YtaCtaT11B.1.177.280.007407
M179Y179YtaCtaT11B.1.177.330.001645
M179Y179YtaCtaT11B.1.177.380.010417
M179Y179YtaCtaT11B.1.177.40.000211
M179Y179YtaCtaT11B.1.177.420.000894
M179Y179YtaCtaT11B.1.177.430.001477
M179Y179YtaCtaT11B.1.177.500.004695
M179Y179YtaCtaT11B.1.177.650.000665
M179Y179delTAC---11B.1.177.830.001481
M179Y179YtaCtaT11B.1.177.870.000728
M179Y179NTacAac11B.1.20.000009
M179Y179HTacCac11B.1.20.000009
M179Y179del2TAc--c11B.1.20.000009
M179Y179XtaCtaA11B.1.20.000009
M179Y179YtaCtaT11B.1.214.20.0006
M179Y179delTAC---11B.1.2210.000071
M179Y179FtActTc11B.1.2340.000132
M179Y179delTAC---11B.1.2430.00007
M179Y179YtaCtaT11B.1.243.10.022222
M179Y179YtaCtaT11B.1.2500.014493
M179Y179delTAC---11B.1.2580.000067
M179Y179YtaCtaT11B.1.258.160.001637
M179Y179YtaCtaT11B.1.2650.001271
M179Y179YtaCtaT11B.1.2790.000514
M179Y179YtaCtaT11B.1.2800.007143
M179Y179FtActTc11B.1.3130.006579
M179Y179YtaCtaT11B.1.3430.020833
M179Y179XtaCtaA11B.1.3510.00003
M179Y179CtActGc11B.1.3510.00003
M179Y179YtaCtaT11B.1.351.30.000876
M179Y179YtaCtaT11B.1.36.100.004785
M179Y179delTAC---11B.1.3770.004566
M179Y179del2TAc--c11B.1.3980.002976
M179Y179YtaCtaT11B.1.3980.002976
M179Y179YtaCtaT11B.1.415.10.007576
M179Y179delTAC---11B.1.4270.00005
M179Y179delTAC---11B.1.4290.000024
M179Y179YtaCtaT11B.1.4360.001029
M179Y179del2TAc--c11B.1.4500.011364
M179Y179YtaCtaT11B.1.4560.003268
M179Y179YtaCtaT11B.1.4590.004082
M179Y179YtaCtaT11B.1.5090.000866
M179Y179YtaCtaT11B.1.5270.003704
M179Y179YtaCtaT11B.1.5380.008065
M179Y179YtaCtaT11B.1.5490.007194
M179Y179YtaCtaT11B.1.5610.000397
M179Y179YtaCtaT11B.1.5760.000907
M179Y179YtaCtaT11B.1.5770.000687
M179Y179YtaCtaT11B.1.5870.001898
M179Y179YtaCtaT11B.1.6090.000479
M179Y179delTAC---11B.1.617.20.000004
M179Y179DTacGac11B.1.617.20.000004
M179Y179HTacCac11B.1.617.20.000004
M179Y179YtaCtaT11B.1.6190.000871
M179Y179CtActGc11B.1.6210.000089
M179Y179YtaCtaT11B.3.10.001658
M179Y179YtaCtaT11B.4.10.018868
M179Y179XtaCtaA11B.60.00091
M179Y179HTacCac11B.60.00091
M179Y179YtaCtaT11C.220.071429
M179Y179YtaCtaT11C.360.000911
M179Y179CtActGc11C.370.000116
M179Y179YtaCtaT11N.50.001767
M179Y179YtaCtaT11N.90.005952
M179Y179del1Tac-ac11P.10.000016
M179Y179YtaCtaT11P.1.10.000318
M179Y179YtaCtaT11P.1.120.000484
M179Y179YtaCtaT11P.60.003145
M179Y179delTAC---11Q.20.000613
M179Y179YtaCtaT11Z.10.00289