CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = M : CodonNum = 161

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
M161I161IsynatCatT30690306070.99729627003-27005
M161I161IsynatCatA30690830.0027044627003-27005
M161I161VnonsynAtcGtc247247127003-27005
M161I161deldelATC---138138127003-27005
M161I161LnonsynAtcCtc7171127003-27005
M161I161FnonsynAtcTtc3030127003-27005
M161I161MnonsynatCatG2727127003-27005
M161I161TnonsynaTcaCc1414127003-27005
M161I161del1delAtCGt-520.427003-27005
M161I161del1delAtc-tc510.227003-27005
M161I161del1delaTCaC-510.227003-27005
M161I161del1delatCat-510.227003-27005
M161I161SnonsynaTcaGc22127003-27005
M161I161GnonsynATcGGc11127003-27005

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
M161I161IatCatT3060730690All0.005854
M161I161IatCatA8330690All0.000016
M161I161IatCatT1567915679AY.1030.097352
M161I161IatCatT61746175AY.40.009609
M161I161IatCatA16175AY.40.000002
M161I161IatCatT14321432AY.650.763326
M161I161IatCatT14291429AY.640.850595
M161I161IatCatT969977B.1.1.70.000867
M161I161IatCatA8977B.1.1.70.000007
M161I161IatCatT781781B.1.617.20.002941
M161I161IatCatT548548B.1.1.1530.600219
M161I161IatCatT372372AY.440.002264
M161I161IatCatT340340AY.390.008402
M161I161VAtcGtc247247All0.000047
M161I161IatCatT203203AY.430.000899
M161I161IatCatT185186B.1.20.001629
M161I161IatCatA1186B.1.20.000009
M161I161IatCatT145147B.10.001328
M161I161IatCatA2147B.10.000018
M161I161delATC---138138All0.000026
M161I161IatCatT126127AY.230.008788
M161I161IatCatA1127AY.230.00007
M161I161IatCatT123125P.10.001938
M161I161IatCatA2125P.10.000032
M161I161delATC---118118B.1.177.210.009023
M161I161IatCatT116116AY.870.096586
M161I161VAtcGtc110110B.1.1.70.000098
M161I161IatCatT9898AY.30.000975
M161I161IatCatT9397AY.250.000559
M161I161IatCatA497AY.250.000024
M161I161IatCatT8787B.1.1770.001146
M161I161IatCatT8282AY.290.001293
M161I161LAtcCtc7171All0.000014
M161I161IatCatT6666AY.460.006869
M161I161LAtcCtc6464B.1.1.3180.019312
M161I161IatCatT5858B.1.1.5190.002303
M161I161IatCatT5353B.1.4290.001247
M161I161IatCatT5151AY.470.001586
M161I161IatCatT5151B.1.2580.003394
M161I161IatCatT5050AY.200.001943
M161I161IatCatA4849B.1.3960.033874
M161I161IatCatT149B.1.3960.000706
M161I161IatCatT4747B.1.10.000853
M161I161IatCatT4141AY.1170.003465
M161I161IatCatT4141B.1.177.770.029775
M161I161IatCatT3939AY.610.004086
M161I161IatCatT3636AY.1020.000955
M161I161IatCatT3434AA.50.548387
M161I161IatCatT3131AY.450.003772
M161I161FAtcTtc3030All0.000006
M161I161IatCatT2828AY.130.004507
M161I161IatCatT2828B.1.3510.000832
M161I161MatCatG2727All0.000005
M161I161IatCatT2727B.1.177.210.002065
M161I161IatCatT2626AY.50.000537
M161I161IatCatT2626B.1.3181
M161I161VAtcGtc2525AY.440.000152
M161I161IatCatT2424B.1.177.180.027842
M161I161IatCatT2323B.1.1.670.105023
M161I161IatCatT1919AY.330.001269
M161I161IatCatT1919B.1.2340.002507
M161I161VAtcGtc1818AY.70.003528
M161I161IatCatT1818B.1.1600.000561
M161I161IatCatT1818B.1.5260.000423
M161I161IatCatT1616AY.1190.000565
M161I161IatCatT1616B.1.2430.001113
M161I161IatCatT1616C.370.001857
M161I161IatCatT1616P.1.70.005109
M161I161IatCatT1515AY.420.000603
M161I161IatCatT1515P.1.140.000717
M161I161TaTcaCc1414All0.000003
M161I161VAtcGtc1414AY.40.000022
M161I161IatCatT1414B.1.177.860.002568
M161I161IatCatT1414B.1.221.10.040698
M161I161IatCatT1313AY.1200.000483
M161I161delATC---1313B.1.1.70.000012
M161I161IatCatT1313B.1.36.290.006725
M161I161IatCatT1313B.1.5960.001133
M161I161IatCatT1212AY.340.001164
M161I161IatCatT1212AY.4.20.00026
M161I161IatCatT1212B.1.177.500.056338
M161I161IatCatA712B.1.360.001021
M161I161IatCatT512B.1.360.00073
M161I161IatCatT1212Q.10.001516
M161I161IatCatT1111AY.1000.000506
M161I161IatCatT1111AY.850.004699
M161I161IatCatT1010AY.29.10.002205
M161I161IatCatT1010AY.750.00056
M161I161IatCatT1010AY.840.004374
M161I161IatCatT1010AY.9.20.000367
M161I161IatCatT1010B0.001278
M161I161IatCatT1010B.1.3820.089286
M161I161IatCatT99AY.7.10.001014
M161I161IatCatT99AY.98.10.000436
M161I161IatCatT99B.1.2210.000639
M161I161VAtcGtc99B.1.617.20.000034
M161I161IatCatT99B.100.07438
M161I161IatCatT88AY.39.10.000317
M161I161IatCatT88AY.46.60.000578
M161I161IatCatT88B.1.6370.000585
M161I161IatCatT88P.1.150.001859
M161I161IatCatT88P.20.001493
M161I161IatCatT77AY.1180.000439
M161I161IatCatT77AY.240.003017
M161I161IatCatT77AY.350.001631
M161I161VAtcGtc77AY.46.40.001152
M161I161VAtcGtc77AY.9.20.000257
M161I161IatCatT77AY.980.000553
M161I161FAtcTtc77B.1.1.70.000006
M161I161IatCatT77B.1.160.90.05036
M161I161IatCatT77B.1.258.170.000728
M161I161IatCatT77B.1.6210.00062
M161I161IatCatT66AY.16.10.00282
M161I161FAtcTtc66AY.40.000009
M161I161VAtcGtc66AY.430.000027
M161I161IatCatT66AY.550.005505
M161I161IatCatT66AY.920.001724
M161I161IatCatT66B.1.1.270.033898
M161I161IatCatT66B.1.5640.002555
M161I161del1AtCGt-25All0
M161I161del1Atc-tc15All0
M161I161del1aTCaC-15All0
M161I161del1atCat-15All0
M161I161FAtcTtc55AY.1030.000031
M161I161VAtcGtc55AY.250.00003
M161I161IatCatT55AY.4.50.000537
M161I161IatCatT55AY.5.30.001687
M161I161IatCatT55AY.600.00469
M161I161IatCatT55AY.670.002321
M161I161IatCatT55B.1.1.280.001556
M161I161IatCatT55B.1.1.2860.014493
M161I161IatCatT55B.1.2390.006105
M161I161IatCatA35B.1.351.20.000908
M161I161IatCatT25B.1.351.20.000605
M161I161IatCatT45B.1.4270.000202
M161I161IatCatA15B.1.4270.00005
M161I161IatCatT55B.1.466.20.001956
M161I161IatCatT55D.20.000375
M161I161IatCatT44A.2.50.001996
M161I161IatCatT44AY.1100.000451
M161I161IatCatT44AY.1160.001147
M161I161IatCatT44AY.120.10.001284
M161I161IatCatT44AY.260.000113
M161I161IatCatT44AY.270.000259
M161I161VAtcGtc44AY.290.000063
M161I161IatCatT34B.1.1.2140.000166
M161I161IatCatA14B.1.1.2140.000055
M161I161IatCatT44B.1.1.3180.001207
M161I161IatCatT44B.1.3490.002859
M161I161IatCatT44B.1.4000.001716
M161I161IatCatT33AY.1050.001929
M161I161IatCatT33AY.3.10.000256
M161I161VAtcGtc33AY.410.000882
M161I161del1AtCGt-23AY.440.000012
M161I161del1aTCaC-13AY.440.000006
M161I161IatCatT33AY.46.10.00308
M161I161IatCatT33AY.46.40.000494
M161I161TaTcaCc33AY.610.000314
M161I161IatCatT33AY.75.10.000541
M161I161IatCatT33AY.820.004071
M161I161IatCatT33AY.990.003148
M161I161MatCatG33B.1.10.000054
M161I161IatCatT33B.1.1.3170.001235
M161I161IatCatT33B.1.1.3890.018182
M161I161IatCatT33B.1.1.4320.003797
M161I161IatCatT33B.1.1.630.001157
M161I161TaTcaCc33B.1.1.70.000003
M161I161VAtcGtc33B.1.1600.000094
M161I161IatCatT33B.1.177.170.002463
M161I161IatCatT33B.1.177.460.002755
M161I161IatCatT33B.1.177.570.000843
M161I161IatCatT33B.1.177.600.000655
M161I161IatCatT33B.1.2060.002447
M161I161IatCatT33B.1.3890.003006
M161I161IatCatT33C.320.069767
M161I161LAtcCtc33P.10.000047
M161I161IatCatT33Q.70.003333
M161I161SaTcaGc22All0
M161I161IatCatT22AY.100.00106
M161I161MatCatG22AY.1030.000012
M161I161IatCatT22AY.1080.002205
M161I161IatCatT22AY.1110.000366
M161I161IatCatT22AY.1210.000271
M161I161IatCatT22AY.160.000759
M161I161IatCatT22AY.190.002281
M161I161FAtcTtc22AY.260.000057
M161I161VAtcGtc22AY.270.000129
M161I161VAtcGtc22AY.300.000791
M161I161MatCatG22AY.40.000003
M161I161TaTcaCc22AY.40.000003
M161I161IatCatT22AY.4.40.000818
M161I161IatCatT22AY.410.000588
M161I161IatCatT22AY.46.50.000397
M161I161IatCatT22AY.480.00093
M161I161IatCatT22AY.540.000191
M161I161IatCatT22AY.580.001815
M161I161IatCatT22AY.680.000547
M161I161IatCatT22AY.70.000392
M161I161IatCatT22AY.730.001331
M161I161IatCatT22AY.780.003082
M161I161IatCatT22AY.90.000135
M161I161IatCatT22AY.930.000546
M161I161IatCatT22B.1.1.2310.006192
M161I161IatCatT22B.1.1.2410.004141
M161I161MatCatG22B.1.1.3180.000604
M161I161IatCatT22B.1.1.3540.008772
M161I161IatCatT22B.1.1.4480.004065
M161I161IatCatT22B.1.110.30.001437
M161I161IatCatT22B.1.1470.001512
M161I161IatCatT22B.1.177.120.000303
M161I161IatCatT22B.1.177.430.002954
M161I161VAtcGtc22B.1.20.000018
M161I161IatCatT22B.1.2100.004264
M161I161VAtcGtc22B.1.2400.000431
M161I161IatCatT22B.1.258.110.000793
M161I161IatCatT22B.1.3320.006993
M161I161MatCatG22B.1.3510.000059
M161I161IatCatT22B.1.36.80.002
M161I161IatCatT22B.1.3620.003082
M161I161VAtcGtc22B.1.4090.001563
M161I161IatCatT22B.1.4260.002018
M161I161IatCatT22B.1.4600.035714
M161I161IatCatT22B.1.4740.003802
M161I161IatCatT22B.1.5250.000226
M161I161VAtcGtc22B.1.5260.000047
M161I161MatCatG22B.1.5800.00813
M161I161IatCatT22B.1.5950.000522
M161I161IatCatT22B.1.6090.000959
M161I161MatCatG22B.1.6310.006734
M161I161IatCatT22C.360.001821
M161I161MatCatG22P.10.000032
M161I161FAtcTtc22P.20.000373
M161I161IatCatT22Q.80.00033
M161I161LAtcCtc110.055556
M161I161FAtcTtc110.055556
M161I161LAtcCtc11A.20.000662
M161I161IatCatT11A.20.000662
M161I161IatCatT11A.23.10.000704
M161I161IatCatT11AD.20.000219
M161I161IatCatT11AE.50.018519
M161I161GATcGGc11All0
M161I161IatCatT11AY.10.000396
M161I161VAtcGtc11AY.1000.000046
M161I161IatCatT11AY.1040.001984
M161I161IatCatT11AY.1060.000335
M161I161VAtcGtc11AY.1070.000466
M161I161IatCatT11AY.1070.000466
M161I161IatCatT11AY.1130.000142
M161I161del1Atc-tc11AY.1200.000037
M161I161VAtcGtc11AY.130.000161
M161I161FAtcTtc11AY.250.000006
M161I161TaTcaCc11AY.250.000006
M161I161delATC---11AY.260.000028
M161I161FAtcTtc11AY.30.00001
M161I161VAtcGtc11AY.30.00001
M161I161MatCatG11AY.30.00001
M161I161IatCatT11AY.300.000396
M161I161IatCatT11AY.370.000316
M161I161VAtcGtc11AY.390.000025
M161I161MatCatG11AY.4.20.000022
M161I161IatCatT11AY.4.2.10.000149
M161I161SaTcaGc11AY.440.000006
M161I161FAtcTtc11AY.440.000006
M161I161IatCatT11AY.46.20.000635
M161I161IatCatT11AY.46.30.000934
M161I161VAtcGtc11AY.46.60.000072
M161I161MatCatG11AY.50.000021
M161I161VAtcGtc11AY.50.000021
M161I161VAtcGtc11AY.5.40.000277
M161I161IatCatT11AY.5.40.000277
M161I161VAtcGtc11AY.510.000909
M161I161IatCatT11AY.560.001605
M161I161IatCatT11AY.570.000656
M161I161IatCatT11AY.60.000041
M161I161VAtcGtc11AY.60.000041
M161I161MatCatG11AY.650.000533
M161I161IatCatT11AY.7.20.000559
M161I161IatCatT11AY.700.000209
M161I161IatCatT11AY.710.000475
M161I161IatCatT11AY.740.000116
M161I161IatCatT11AY.80.000606
M161I161IatCatT11AY.880.000884
M161I161IatCatT11AY.9.10.000084
M161I161VAtcGtc11AY.9.10.000084
M161I161IatCatT11AY.960.002075
M161I161LAtcCtc11AY.98.10.000048
M161I161VAtcGtc11AY.99.20.000092
M161I161IatCatT11AZ.50.003509
M161I161TaTcaCc11B0.000128
M161I161delATC---11B0.000128
M161I161delATC---11B.10.000009
M161I161VAtcGtc11B.10.000009
M161I161TaTcaCc11B.1.10.000018
M161I161VAtcGtc11B.1.10.000018
M161I161IatCatT11B.1.1.1390.022727
M161I161IatCatT11B.1.1.1610.003534
M161I161IatCatA11B.1.1.1630.007634
M161I161IatCatT11B.1.1.1760.000439
M161I161MatCatG11B.1.1.1890.001513
M161I161IatCatT11B.1.1.2160.00089
M161I161IatCatT11B.1.1.2210.010101
M161I161delATC---11B.1.1.2210.010101
M161I161IatCatT11B.1.1.2770.000759
M161I161IatCatT11B.1.1.2790.001121
M161I161MatCatG11B.1.1.2840.000107
M161I161IatCatT11B.1.1.2960.018182
M161I161IatCatT11B.1.1.3060.000438
M161I161IatCatT11B.1.1.3120.001912
M161I161IatCatT11B.1.1.340.013158
M161I161IatCatT11B.1.1.3690.000446
M161I161IatCatT11B.1.1.3710.010417
M161I161IatCatT11B.1.1.3720.000689
M161I161IatCatT11B.1.1.390.00051
M161I161delATC---11B.1.1.4200.001006
M161I161IatCatT11B.1.1.440.00241
M161I161IatCatT11B.1.1.4640.001473
M161I161TaTcaCc11B.1.1.4670.019231
M161I161IatCatT11B.1.1.470.005348
M161I161IatCatT11B.1.1.500.000679
M161I161SaTcaGc11B.1.1.70.000001
M161I161LAtcCtc11B.1.1.700.000341
M161I161IatCatT11B.1.1110.001175
M161I161IatCatT11B.1.1490.003425
M161I161IatCatT11B.1.1510.011111
M161I161MatCatG11B.1.1770.000013
M161I161del1atCat-11B.1.177.210.000076
M161I161IatCatT11B.1.177.350.000691
M161I161IatCatT11B.1.177.370.027027
M161I161IatCatT11B.1.177.440.000519
M161I161VAtcGtc11B.1.177.540.000606
M161I161IatCatT11B.1.177.650.000665
M161I161IatCatT11B.1.177.740.015152
M161I161IatCatT11B.1.177.790.002342
M161I161IatCatT11B.1.177.820.000477
M161I161FAtcTtc11B.1.20.000009
M161I161MatCatG11B.1.20.000009
M161I161IatCatT11B.1.2140.003663
M161I161IatCatT11B.1.214.20.0006
M161I161MatCatG11B.1.2210.000071
M161I161IatCatT11B.1.221.40.004167
M161I161IatCatT11B.1.2290.009709
M161I161IatCatT11B.1.2400.000216
M161I161IatCatT11B.1.243.10.022222
M161I161delATC---11B.1.258.110.000396
M161I161IatCatT11B.1.258.220.002667
M161I161FAtcTtc11B.1.258.30.001675
M161I161MatCatG11B.1.3080.034483
M161I161IatCatT11B.1.3440.008197
M161I161VAtcGtc11B.1.3510.00003
M161I161IatCatT11B.1.36.10.00114
M161I161IatCatT11B.1.36.310.001751
M161I161IatCatA11B.1.36.350.002604
M161I161VAtcGtc11B.1.3620.001541
M161I161VAtcGtc11B.1.362.20.004717
M161I161IatCatT11B.1.3710.001122
M161I161IatCatT11B.1.3800.006623
M161I161delATC---11B.1.4270.00005
M161I161VAtcGtc11B.1.4290.000024
M161I161FAtcTtc11B.1.4290.000024
M161I161VAtcGtc11B.1.5170.000427
M161I161IatCatT11B.1.5230.002451
M161I161IatCatT11B.1.5460.003704
M161I161IatCatT11B.1.5580.004566
M161I161IatCatT11B.1.5610.000397
M161I161IatCatT11B.1.5650.00081
M161I161IatCatT11B.1.5750.000303
M161I161IatCatT11B.1.5920.04
M161I161VAtcGtc11B.1.5950.000261
M161I161IatCatT11B.1.6000.005848
M161I161IatCatT11B.1.617.10.000129
M161I161GATcGGc11B.1.617.20.000004
M161I161IatCatA11B.1.6200.000946
M161I161IatCatT11B.1.6320.006711
M161I161VAtcGtc11B.1.6370.000073
M161I161IatCatA11B.1.780.008547
M161I161IatCatT11B.1.90.006173
M161I161IatCatT11B.1.940.027027
M161I161IatCatT11B.280.003279
M161I161IatCatT11B.390.002331
M161I161IatCatT11B.430.014286
M161I161IatCatT11C.1.20.004255
M161I161IatCatT11C.160.00106
M161I161IatCatT11C.350.000774
M161I161IatCatT11C.36.30.000567
M161I161IatCatT11C.36.3.10.002717
M161I161FAtcTtc11C.370.000116
M161I161VAtcGtc11D.20.000075
M161I161TaTcaCc11D.20.000075
M161I161IatCatT11N.90.005952
M161I161IatCatT11P.1.120.000484
M161I161VAtcGtc11P.1.140.000048
M161I161IatCatT11P.1.80.004785
M161I161IatCatT11P.70.004367
M161I161IatCatT11Q.30.000145
M161I161IatCatT11Q.40.000455
M161I161TaTcaCc11R.10.00009