CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = M : CodonNum = 160

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
M160D160DsyngaCgaT61886188127000-27002
M160D160YnonsynGacTac298298127000-27002
M160D160deldelGAC---140140127000-27002
M160D160GnonsyngAcgGc48470.97916727000-27002
M160D160GnonsyngACgGG4810.020833327000-27002
M160D160EnonsyngaCgaA43220.51162827000-27002
M160D160EnonsyngaCgaG43210.48837227000-27002
M160D160NnonsynGacAac14130.92857127000-27002
M160D160NnonsynGaCAaT1410.071428627000-27002
M160D160AnonsyngAcgCc1212127000-27002
M160D160HnonsynGacCac760.85714327000-27002
M160D160HnonsynGaCCaT710.14285727000-27002
M160D160VnonsyngAcgTc66127000-27002
M160D160FnonsynGAcTTc11127000-27002
M160D160del2delGAc--c11127000-27002
M160D160SnonsynGAcAGc11127000-27002
M160D160CnonsynGAcTGc11127000-27002

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
M160D160DgaCgaT61886188All0.001184
M160D160DgaCgaT880880B.1.1.70.000788
M160D160DgaCgaT519519B.1.1.2880.994253
M160D160DgaCgaT346346AY.1030.002148
M160D160DgaCgaT315315B.1.6210.027884
M160D160YGacTac298298All0.000057
M160D160DgaCgaT263263AY.40.000409
M160D160DgaCgaT258258AU.10.326582
M160D160DgaCgaT250250B.1.177.200.379363
M160D160DgaCgaT250250B.1.20.002201
M160D160DgaCgaT237237B.1.617.20.000892
M160D160DgaCgaT184184B.1.1.2940.232911
M160D160DgaCgaT178178AY.230.012415
M160D160delGAC---140140All0.000027
M160D160DgaCgaT138138AY.430.000611
M160D160DgaCgaT137137AY.250.000824
M160D160delGAC---118118B.1.177.210.009023
M160D160DgaCgaT117117B.1.1.3911
M160D160DgaCgaT112112B.1.1.2140.006211
M160D160DgaCgaT108108AY.9.10.009042
M160D160DgaCgaT100100B.1.177.210.007647
M160D160DgaCgaT9494B.10.000861
M160D160DgaCgaT8080AY.440.000487
M160D160DgaCgaT7878AY.1140.018026
M160D160DgaCgaT7171AY.46.60.005127
M160D160DgaCgaT7070P.10.001103
M160D160DgaCgaT6666B.1.10.001197
M160D160DgaCgaT5959AY.4.20.00128
M160D160GgAcgGc4748All0.000009
M160D160GgACgGG148All0
M160D160YGacTac4545AY.40.00007
M160D160DgaCgaT4444AY.390.001087
M160D160EgaCgaA2243All0.000004
M160D160EgaCgaG2143All0.000004
M160D160DgaCgaT4343B.1.3510.001278
M160D160DgaCgaT4141B.1.1.5190.001628
M160D160YGacTac4141B.1.1.70.000037
M160D160DgaCgaT3838B.1.6370.002777
M160D160DgaCgaT3737AY.30.000368
M160D160YGacTac3434B.1.617.20.000128
M160D160DgaCgaT3333B.1.2210.002344
M160D160DgaCgaT2929B.1.1.4501
M160D160DgaCgaT2626AY.300.010289
M160D160DgaCgaT2525AY.260.000708
M160D160DgaCgaT2424P.1.140.001147
M160D160DgaCgaT2323B.1.4290.000541
M160D160DgaCgaT2121B.1.2430.001461
M160D160DgaCgaT1818AY.5.40.004981
M160D160DgaCgaT1818B.1.258.30.030151
M160D160DgaCgaT1818B.1.5960.001568
M160D160DgaCgaT1616AS.20.25
M160D160DgaCgaT1616B.1.160.280.046784
M160D160DgaCgaT1616B.1.2400.003449
M160D160DgaCgaT1515AY.880.013263
M160D160DgaCgaT1515B.1.177.350.010366
M160D160DgaCgaT1515B.1.617.10.001934
M160D160NGacAac1314All0.000002
M160D160NGaCAaT114All0
M160D160DgaCgaT1414AY.1020.000371
M160D160DgaCgaT1414AY.1100.001578
M160D160DgaCgaT1414AY.420.000563
M160D160DgaCgaT1414AY.610.001467
M160D160delGAC---1414B.1.1.70.000013
M160D160DgaCgaT1414B.1.1600.000437
M160D160GgAcgGc1414B.1.20.000123
M160D160DgaCgaT1313B.1.1.700.004434
M160D160DgaCgaT1313B.1.1770.000171
M160D160AgAcgCc1212All0.000002
M160D160DgaCgaT1212AY.1190.000424
M160D160YGacTac1212AY.430.000053
M160D160GgAcgGc1112AY.440.000067
M160D160GgACgGG112AY.440.000006
M160D160DgaCgaT1212AY.940.005312
M160D160DgaCgaT1212B.1.177.20.054545
M160D160DgaCgaT1212B.1.177.600.002621
M160D160DgaCgaT1111AY.1000.000506
M160D160DgaCgaT1111AY.120.003477
M160D160DgaCgaT1111AY.930.003004
M160D160DgaCgaT1111B.1.5770.00756
M160D160DgaCgaT1010AY.1130.001424
M160D160YGacTac1010AY.39.10.000396
M160D160DgaCgaT1010AY.46.20.006353
M160D160DgaCgaT1010B.1.1.5170.068027
M160D160DgaCgaT1010B.1.4090.007812
M160D160DgaCgaT99AY.200.00035
M160D160YGacTac99B.10.000082
M160D160DgaCgaT99B.1.1.2980.007759
M160D160DgaCgaT99P.30.014354
M160D160DgaCgaT88AY.1200.000297
M160D160DgaCgaT88AY.1210.001083
M160D160DgaCgaT88AY.140.000704
M160D160YGacTac88AY.30.00008
M160D160DgaCgaT88B.1.1.10.002614
M160D160DgaCgaT88B.1.1.3180.002414
M160D160DgaCgaT88B.1.1.5210.042781
M160D160DgaCgaT88B.1.360.001167
M160D160DgaCgaT88B.1.4360.00823
M160D160DgaCgaT88B.1.5260.000188
M160D160DgaCgaT88Q.80.001319
M160D160HGacCac67All0.000001
M160D160HGaCCaT17All0
M160D160YGacTac77AY.290.00011
M160D160DgaCgaT77AY.60.000288
M160D160DgaCgaT77AY.9.20.000257
M160D160DgaCgaT77B.1.1.2160.006233
M160D160DgaCgaT77B.1.1.330.002946
M160D160YGacTac77B.1.20.000062
M160D160DgaCgaT77C.370.000812
M160D160DgaCgaT77Q.10.000884
M160D160DgaCgaT66A0.002322
M160D160VgAcgTc66All0.000001
M160D160DgaCgaT66AY.3.10.000512
M160D160EgaCgaG66AY.440.000037
M160D160YGacTac66AY.440.000037
M160D160DgaCgaT66AY.450.00073
M160D160DgaCgaT66AY.460.000624
M160D160DgaCgaT66AY.510.005455
M160D160DgaCgaT66AY.98.10.000291
M160D160DgaCgaT66B.1.2580.000399
M160D160DgaCgaT55AY.290.000079
M160D160EgaCgaG45AY.40.000006
M160D160EgaCgaA15AY.40.000002
M160D160DgaCgaT55AY.4.50.000537
M160D160DgaCgaT55AY.470.000156
M160D160DgaCgaT55AY.650.002665
M160D160DgaCgaT55AY.840.002187
M160D160DgaCgaT55B.1.1.3000.053763
M160D160YGacTac55B.1.1770.000066
M160D160DgaCgaT55B.1.36.380.00821
M160D160DgaCgaT55B.1.4270.000252
M160D160DgaCgaT55B.1.438.10.000536
M160D160DgaCgaT55B.1.466.20.001956
M160D160DgaCgaT55C.36.30.002836
M160D160DgaCgaT55P.1.150.001162
M160D160DgaCgaT55P.20.000933
M160D160YGacTac44AY.1030.000025
M160D160EgaCgaA44AY.30.00004
M160D160DgaCgaT44AY.330.000267
M160D160GgAcgGc44AY.40.000006
M160D160DgaCgaT44AY.46.50.000794
M160D160DgaCgaT44AY.50.000083
M160D160YGacTac44AY.50.000083
M160D160DgaCgaT44AY.580.00363
M160D160DgaCgaT44AY.75.10.000721
M160D160DgaCgaT44B.1.1.2630.006231
M160D160DgaCgaT44B.1.1.4330.005698
M160D160EgaCgaA24B.1.1.70.000002
M160D160EgaCgaG24B.1.1.70.000002
M160D160DgaCgaT44B.1.177.730.002265
M160D160DgaCgaT44B.1.177.770.002905
M160D160DgaCgaT44B.1.177.810.000757
M160D160DgaCgaT44B.1.2340.000528
M160D160YGacTac44B.1.4220.003249
M160D160DgaCgaT44B.1.760.045455
M160D160GgAcgGc44P.1.130.003594
M160D160DgaCgaT33AD.20.000657
M160D160EgaCgaG23AY.1020.000053
M160D160EgaCgaA13AY.1020.000027
M160D160YGacTac33AY.1070.001398
M160D160DgaCgaT33AY.1070.001398
M160D160DgaCgaT33AY.1090.002219
M160D160YGacTac33AY.1200.000112
M160D160YGacTac33AY.200.000117
M160D160DgaCgaT33AY.270.000194
M160D160DgaCgaT33AY.320.001597
M160D160YGacTac33AY.390.000074
M160D160YGacTac33AY.460.000312
M160D160DgaCgaT33AY.540.000286
M160D160DgaCgaT33AY.850.001282
M160D160DgaCgaT33AY.910.002191
M160D160YGacTac33B.1.10.000054
M160D160DgaCgaT33B.1.1.2220.000612
M160D160DgaCgaT33B.1.1.3060.001315
M160D160DgaCgaT33B.1.1.4340.001046
M160D160DgaCgaT33B.1.177.160.001993
M160D160DgaCgaT33B.1.177.70.000495
M160D160YGacTac33B.1.3510.000089
M160D160DgaCgaT33B.1.36.290.001552
M160D160DgaCgaT33B.1.3770.013699
M160D160DgaCgaT33B.1.4000.001287
M160D160YGacTac33B.1.4290.000071
M160D160DgaCgaT33B.1.5950.000783
M160D160EgaCgaG33B.1.617.20.000011
M160D160DgaCgaT33C.40.03
M160D160YGacTac33P.10.000047
M160D160EgaCgaA33P.20.00056
M160D160EgaCgaA33Q.10.000379
M160D160YGacTac220.111111
M160D160DgaCgaT22A.23.10.001408
M160D160DgaCgaT22AY.1010.000981
M160D160YGacTac22AY.1020.000053
M160D160DgaCgaT22AY.1060.00067
M160D160DgaCgaT22AY.1170.000169
M160D160DgaCgaT22AY.1180.000125
M160D160DgaCgaT22AY.130.000322
M160D160DgaCgaT22AY.160.000759
M160D160YGacTac22AY.23.10.000835
M160D160YGacTac22AY.250.000012
M160D160YGacTac22AY.260.000057
M160D160EgaCgaG22AY.270.000129
M160D160DgaCgaT22AY.360.000296
M160D160HGacCac22AY.40.000003
M160D160DgaCgaT22AY.4.2.10.000298
M160D160AgAcgCc22AY.440.000012
M160D160YGacTac22AY.5.40.000553
M160D160AgAcgCc22AY.60.000082
M160D160DgaCgaT22AY.620.000871
M160D160DgaCgaT22AY.670.000929
M160D160DgaCgaT22AY.700.000417
M160D160DgaCgaT22AY.91.10.00813
M160D160DgaCgaT22AY.960.004149
M160D160DgaCgaT22AY.99.20.000184
M160D160GgAcgGc22B.1.10.000036
M160D160DgaCgaT22B.1.1.1330.016949
M160D160DgaCgaT22B.1.1.1530.002191
M160D160DgaCgaT22B.1.1.1890.003026
M160D160DgaCgaT22B.1.1.2030.033898
M160D160DgaCgaT22B.1.1.3190.035088
M160D160DgaCgaT22B.1.1.4170.005405
M160D160AgAcgCc22B.1.1.70.000002
M160D160HGaCCaT12B.1.1.70.000001
M160D160HGacCac12B.1.1.70.000001
M160D160GgAcgGc22B.1.1.700.000682
M160D160DgaCgaT22B.1.1260.002551
M160D160YGacTac22B.1.160.80.002577
M160D160DgaCgaT22B.1.177.540.001213
M160D160DgaCgaT22B.1.177.570.000562
M160D160DgaCgaT22B.1.177.60.001953
M160D160EgaCgaA22B.1.177.730.001133
M160D160DgaCgaT22B.1.2230.005556
M160D160DgaCgaT22B.1.258.170.000208
M160D160DgaCgaT22B.1.3200.002491
M160D160NGacAac22B.1.3510.000059
M160D160DgaCgaT22B.1.351.20.000605
M160D160DgaCgaT22B.1.36.10.002281
M160D160DgaCgaT22B.1.36.180.00084
M160D160DgaCgaT22B.1.4450.023529
M160D160YGacTac22B.1.5260.000047
M160D160DgaCgaT22B.1.5460.007407
M160D160DgaCgaT22B.1.5640.000852
M160D160DgaCgaT22B.1.6000.011696
M160D160DgaCgaT22B.1.6090.000959
M160D160YGacTac22B.1.617.10.000258
M160D160NGacAac22B.1.617.20.000008
M160D160GgAcgGc22B.1.617.20.000008
M160D160YGacTac22B.1.6230.001073
M160D160DgaCgaT22B.110.010256
M160D160DgaCgaT22C.350.001548
M160D160YGacTac22D.20.00015
M160D160DgaCgaT22D.50.00995
M160D160DgaCgaT22P.1.160.000748
M160D160DgaCgaT22R.10.00018
M160D160FGAcTTc110.055556
M160D160GgAcgGc110.055556
M160D160CGAcTGc110.055556
M160D160VgAcgTc110.055556
M160D160YGacTac11A0.000387
M160D160CGAcTGc11All0
M160D160FGAcTTc11All0
M160D160SGAcAGc11All0
M160D160del2GAc--c11All0
M160D160YGacTac11AY.1000.000046
M160D160AgAcgCc11AY.1030.000006
M160D160DgaCgaT11AY.1040.001984
M160D160DgaCgaT11AY.1050.000643
M160D160NGacAac11AY.1070.000466
M160D160DgaCgaT11AY.1080.001103
M160D160DgaCgaT11AY.1110.000183
M160D160YGacTac11AY.1130.000142
M160D160YGacTac11AY.1170.000085
M160D160YGacTac11AY.1190.000035
M160D160AgAcgCc11AY.1190.000035
M160D160delGAC---11AY.1200.000037
M160D160DgaCgaT11AY.120.20.001285
M160D160YGacTac11AY.130.000161
M160D160YGacTac11AY.140.000088
M160D160YGacTac11AY.16.10.00047
M160D160EgaCgaA11AY.230.00007
M160D160GgAcgGc11AY.250.000006
M160D160VgAcgTc11AY.250.000006
M160D160delGAC---11AY.260.000028
M160D160YGacTac11AY.270.000065
M160D160GgAcgGc11AY.30.00001
M160D160NGacAac11AY.30.00001
M160D160DgaCgaT11AY.340.000097
M160D160YGacTac11AY.340.000097
M160D160DgaCgaT11AY.34.10.00051
M160D160DgaCgaT11AY.370.000316
M160D160EgaCgaG11AY.390.000025
M160D160YGacTac11AY.39.20.001541
M160D160NGacAac11AY.40.000002
M160D160DgaCgaT11AY.4.30.000842
M160D160YGacTac11AY.4.50.000107
M160D160DgaCgaT11AY.400.000964
M160D160DgaCgaT11AY.410.000294
M160D160EgaCgaG11AY.430.000004
M160D160NGacAac11AY.430.000004
M160D160SGAcAGc11AY.440.000006
M160D160NGaCAaT11AY.440.000006
M160D160YGacTac11AY.46.40.000165
M160D160GgAcgGc11AY.46.40.000165
M160D160YGacTac11AY.46.60.000072
M160D160YGacTac11AY.540.000095
M160D160DgaCgaT11AY.550.000917
M160D160YGacTac11AY.550.000917
M160D160EgaCgaA11AY.570.000656
M160D160EgaCgaA11AY.60.000041
M160D160YGacTac11AY.60.000041
M160D160YGacTac11AY.610.000105
M160D160YGacTac11AY.650.000533
M160D160YGacTac11AY.670.000464
M160D160DgaCgaT11AY.680.000274
M160D160YGacTac11AY.680.000274
M160D160DgaCgaT11AY.70.000196
M160D160del2GAc--c11AY.710.000475
M160D160DgaCgaT11AY.740.000116
M160D160DgaCgaT11AY.750.000056
M160D160VgAcgTc11AY.75.10.00018
M160D160DgaCgaT11AY.810.001992
M160D160DgaCgaT11AY.820.001357
M160D160YGacTac11AY.90.000068
M160D160YGacTac11AY.9.20.000037
M160D160YGacTac11AY.900.000684
M160D160YGacTac11AY.930.000273
M160D160DgaCgaT11AY.970.001701
M160D160YGacTac11AY.970.001701
M160D160DgaCgaT11AY.990.001049
M160D160YGacTac11AY.99.10.001553
M160D160delGAC---11B0.000128
M160D160YGacTac11B0.000128
M160D160VgAcgTc11B.10.000009
M160D160delGAC---11B.10.000009
M160D160VgAcgTc11B.1.10.000018
M160D160YGacTac11B.1.1.1410.002012
M160D160DgaCgaT11B.1.1.1610.003534
M160D160DgaCgaT11B.1.1.2090.008929
M160D160DgaCgaT11B.1.1.2100.005714
M160D160YGacTac11B.1.1.2160.00089
M160D160DgaCgaT11B.1.1.2190.005
M160D160delGAC---11B.1.1.2210.010101
M160D160DgaCgaT11B.1.1.2360.006897
M160D160DgaCgaT11B.1.1.2400.004695
M160D160DgaCgaT11B.1.1.280.000311
M160D160DgaCgaT11B.1.1.2840.000107
M160D160DgaCgaT11B.1.1.2990.012195
M160D160DgaCgaT11B.1.1.3050.003861
M160D160YGacTac11B.1.1.3060.000438
M160D160DgaCgaT11B.1.1.3160.000925
M160D160DgaCgaT11B.1.1.3170.000412
M160D160DgaCgaT11B.1.1.3260.001761
M160D160GgAcgGc11B.1.1.3260.001761
M160D160DgaCgaT11B.1.1.3480.000796
M160D160DgaCgaT11B.1.1.3540.004386
M160D160DgaCgaT11B.1.1.3620.005618
M160D160DgaCgaT11B.1.1.3720.000689
M160D160YGacTac11B.1.1.3720.000689
M160D160DgaCgaT11B.1.1.3730.02381
M160D160DgaCgaT11B.1.1.3830.0625
M160D160DgaCgaT11B.1.1.3850.004464
M160D160EgaCgaA11B.1.1.390.00051
M160D160delGAC---11B.1.1.4200.001006
M160D160DgaCgaT11B.1.1.4320.001266
M160D160DgaCgaT11B.1.1.440.00241
M160D160DgaCgaT11B.1.1.4660.008696
M160D160DgaCgaT11B.1.1.510.001718
M160D160HGacCac11B.1.1.5190.00004
M160D160NGacAac11B.1.1.5190.00004
M160D160DgaCgaT11B.1.1.5230.001563
M160D160NGacAac11B.1.1.70.000001
M160D160GgAcgGc11B.1.1.70.000001
M160D160DgaCgaT11B.1.1.710.006061
M160D160DgaCgaT11B.1.110.30.000718
M160D160AgAcgCc11B.1.1600.000031
M160D160YGacTac11B.1.1600.000031
M160D160VgAcgTc11B.1.1600.000031
M160D160DgaCgaT11B.1.160.170.001701
M160D160DgaCgaT11B.1.177.120.000152
M160D160YGacTac11B.1.177.210.000076
M160D160NGacAac11B.1.177.210.000076
M160D160DgaCgaT11B.1.177.420.000894
M160D160DgaCgaT11B.1.177.430.001477
M160D160DgaCgaT11B.1.177.440.000519
M160D160YGacTac11B.1.177.450.000381
M160D160YGacTac11B.1.177.540.000606
M160D160YGacTac11B.1.177.600.000218
M160D160DgaCgaT11B.1.177.650.000665
M160D160EgaCgaA11B.1.177.70.000165
M160D160YGacTac11B.1.177.730.000566
M160D160NGacAac11B.1.20.000009
M160D160HGacCac11B.1.20.000009
M160D160AgAcgCc11B.1.2210.000071
M160D160YGacTac11B.1.2210.000071
M160D160YGacTac11B.1.230.006061
M160D160HGacCac11B.1.230.006061
M160D160YGacTac11B.1.2390.001221
M160D160GgAcgGc11B.1.2400.000216
M160D160YGacTac11B.1.2580.000067
M160D160delGAC---11B.1.258.110.000396
M160D160DgaCgaT11B.1.258.220.002667
M160D160DgaCgaT11B.1.2600.003344
M160D160AgAcgCc11B.1.2600.003344
M160D160DgaCgaT11B.1.2840.013158
M160D160YGacTac11B.1.3010.005917
M160D160YGacTac11B.1.3130.006579
M160D160GgAcgGc11B.1.3440.008197
M160D160DgaCgaT11B.1.3490.000715
M160D160DgaCgaT11B.1.36.220.001208
M160D160YGacTac11B.1.36.290.000517
M160D160DgaCgaT11B.1.3750.00082
M160D160DgaCgaT11B.1.3910.001127
M160D160DgaCgaT11B.1.3930.028571
M160D160EgaCgaA11B.1.4090.000781
M160D160YGacTac11B.1.416.10.001563
M160D160delGAC---11B.1.4270.00005
M160D160YGacTac11B.1.438.10.000107
M160D160DgaCgaT11B.1.4710.002732
M160D160DgaCgaT11B.1.4980.020408
M160D160DgaCgaT11B.1.5090.000866
M160D160DgaCgaT11B.1.5230.002451
M160D160DgaCgaT11B.1.5250.000113
M160D160DgaCgaT11B.1.5600.00463
M160D160DgaCgaT11B.1.5760.000907
M160D160DgaCgaT11B.1.5820.000491
M160D160YGacTac11B.1.5950.000261
M160D160YGacTac11B.1.5960.000087
M160D160YGacTac11B.1.619.10.000641
M160D160DgaCgaT11B.1.6200.000946
M160D160DgaCgaT11B.1.6230.000536
M160D160DgaCgaT11B.1.6280.000352
M160D160DgaCgaT11B.1.6320.006711
M160D160DgaCgaT11B.430.014286
M160D160DgaCgaT11B.570.015152
M160D160YGacTac11B.60.00091
M160D160YGacTac11B.6.60.000889
M160D160DgaCgaT11C.160.00106
M160D160DgaCgaT11C.90.030303
M160D160DgaCgaT11N.50.001767
M160D160AgAcgCc11P.10.000016
M160D160DgaCgaT11P.1.120.000484
M160D160NGacAac11P.1.150.000232
M160D160YGacTac11Q.10.000126