CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
M | 16 | L16L | syn | ctC | ctT | 1970 | 1898 | 0.963452 | 26568-26570 | |
M | 16 | L16L | syn | ctC | ctA | 1970 | 55 | 0.0279188 | 26568-26570 | |
M | 16 | L16L | syn | ctC | ctG | 1970 | 14 | 0.0071066 | 26568-26570 | |
M | 16 | L16L | syn | CtC | TtA | 1970 | 2 | 0.00101523 | 26568-26570 | |
M | 16 | L16L | syn | CtC | TtG | 1970 | 1 | 0.000507614 | 26568-26570 | |
M | 16 | L16I | nonsyn | Ctc | Atc | 265 | 263 | 0.992453 | 26568-26570 | |
M | 16 | L16I | nonsyn | CtC | AtT | 265 | 2 | 0.00754717 | 26568-26570 | |
M | 16 | L16F | nonsyn | Ctc | Ttc | 94 | 90 | 0.957447 | 26568-26570 | |
M | 16 | L16F | nonsyn | CtC | TtT | 94 | 4 | 0.0425532 | 26568-26570 | |
M | 16 | L16del | del | CTC | --- | 78 | 78 | 1 | 26568-26570 | |
M | 16 | L16P | nonsyn | cTc | cCc | 7 | 6 | 0.857143 | 26568-26570 | |
M | 16 | L16P | nonsyn | cTC | cCT | 7 | 1 | 0.142857 | 26568-26570 | |
M | 16 | L16S | nonsyn | CTc | TCc | 6 | 2 | 0.333333 | 26568-26570 | |
M | 16 | L16S | nonsyn | CTC | TCT | 6 | 2 | 0.333333 | 26568-26570 | |
M | 16 | L16S | nonsyn | CTC | TCG | 6 | 1 | 0.166667 | 26568-26570 | |
M | 16 | L16S | nonsyn | CTc | AGc | 6 | 1 | 0.166667 | 26568-26570 | |
M | 16 | L16R | nonsyn | cTc | cGc | 5 | 4 | 0.8 | 26568-26570 | |
M | 16 | L16del1 | del | ctC | ct- | 5 | 4 | 0.8 | 26568-26570 | |
M | 16 | L16V | nonsyn | Ctc | Gtc | 5 | 2 | 0.4 | 26568-26570 | |
M | 16 | L16V | nonsyn | CtC | GtT | 5 | 1 | 0.2 | 26568-26570 | |
M | 16 | L16del1 | del | CTc | -Cc | 5 | 1 | 0.2 | 26568-26570 | |
M | 16 | L16V | nonsyn | CtC | GtA | 5 | 1 | 0.2 | 26568-26570 | |
M | 16 | L16V | nonsyn | CtC | GtG | 5 | 1 | 0.2 | 26568-26570 | |
M | 16 | L16R | nonsyn | cTC | cGG | 5 | 1 | 0.2 | 26568-26570 | |
M | 16 | L16H | nonsyn | cTc | cAc | 4 | 4 | 1 | 26568-26570 | |
M | 16 | L16Q | nonsyn | cTC | cAG | 4 | 2 | 0.5 | 26568-26570 | |
M | 16 | L16Q | nonsyn | cTC | cAA | 4 | 2 | 0.5 | 26568-26570 | |
M | 16 | L16del2 | del | CTc | --c | 2 | 2 | 1 | 26568-26570 | |
M | 16 | L16X | nonsyn | CTC | TAG | 2 | 1 | 0.5 | 26568-26570 | |
M | 16 | L16A | nonsyn | CTc | GCc | 2 | 1 | 0.5 | 26568-26570 | |
M | 16 | L16A | nonsyn | CTC | GCT | 2 | 1 | 0.5 | 26568-26570 | |
M | 16 | L16E | nonsyn | CTC | GAA | 2 | 1 | 0.5 | 26568-26570 | |
M | 16 | L16E | nonsyn | CTC | GAG | 2 | 1 | 0.5 | 26568-26570 | |
M | 16 | L16X | nonsyn | CTC | TAA | 2 | 1 | 0.5 | 26568-26570 | |
M | 16 | L16Y | nonsyn | CTc | TAc | 1 | 1 | 1 | 26568-26570 | |
M | 16 | L16D | nonsyn | CTc | GAc | 1 | 1 | 1 | 26568-26570 | |
M | 16 | L16N | nonsyn | CTc | AAc | 1 | 1 | 1 | 26568-26570 | |
M | 16 | L16M | nonsyn | CtC | AtG | 1 | 1 | 1 | 26568-26570 | |
M | 16 | L16C | nonsyn | CTc | TGc | 1 | 1 | 1 | 26568-26570 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
M | 16 | L16L | ctC | ctT | 1898 | 1970 | All | 0.000363 |
M | 16 | L16L | ctC | ctA | 55 | 1970 | All | 0.000011 |
M | 16 | L16L | ctC | ctG | 14 | 1970 | All | 0.000003 |
M | 16 | L16L | CtC | TtA | 2 | 1970 | All | 0 |
M | 16 | L16L | CtC | TtG | 1 | 1970 | All | 0 |
M | 16 | L16L | ctC | ctT | 587 | 587 | AY.74 | 0.067885 |
M | 16 | L16L | ctC | ctT | 306 | 306 | AY.44 | 0.001863 |
M | 16 | L16I | Ctc | Atc | 263 | 265 | All | 0.00005 |
M | 16 | L16I | CtC | AtT | 2 | 265 | All | 0 |
M | 16 | L16L | ctC | ctT | 228 | 229 | B.1.1.7 | 0.000204 |
M | 16 | L16L | ctC | ctA | 1 | 229 | B.1.1.7 | 0.000001 |
M | 16 | L16L | ctC | ctT | 184 | 192 | AY.4 | 0.000286 |
M | 16 | L16L | ctC | ctA | 7 | 192 | AY.4 | 0.000011 |
M | 16 | L16L | CtC | TtA | 1 | 192 | AY.4 | 0.000002 |
M | 16 | L16I | Ctc | Atc | 169 | 170 | AT.1 | 0.866667 |
M | 16 | L16I | CtC | AtT | 1 | 170 | AT.1 | 0.005128 |
M | 16 | L16L | ctC | ctT | 140 | 150 | B.1.617.2 | 0.000527 |
M | 16 | L16L | ctC | ctA | 10 | 150 | B.1.617.2 | 0.000038 |
M | 16 | L16L | ctC | ctT | 114 | 115 | AY.25 | 0.000686 |
M | 16 | L16L | ctC | ctA | 1 | 115 | AY.25 | 0.000006 |
M | 16 | L16F | Ctc | Ttc | 90 | 94 | All | 0.000017 |
M | 16 | L16F | CtC | TtT | 4 | 94 | All | 0.000001 |
M | 16 | L16del | CTC | --- | 78 | 78 | All | 0.000015 |
M | 16 | L16L | ctC | ctT | 53 | 53 | AY.35 | 0.012351 |
M | 16 | L16L | ctC | ctT | 25 | 26 | AY.103 | 0.000155 |
M | 16 | L16L | ctC | ctA | 1 | 26 | AY.103 | 0.000006 |
M | 16 | L16I | Ctc | Atc | 22 | 22 | B.1.637 | 0.001608 |
M | 16 | L16F | Ctc | Ttc | 16 | 19 | B.1.1.7 | 0.000014 |
M | 16 | L16F | CtC | TtT | 3 | 19 | B.1.1.7 | 0.000003 |
M | 16 | L16I | Ctc | Atc | 19 | 19 | B.1.525 | 0.00215 |
M | 16 | L16L | ctC | ctT | 10 | 18 | B.1 | 0.000092 |
M | 16 | L16L | ctC | ctA | 4 | 18 | B.1 | 0.000037 |
M | 16 | L16L | ctC | ctG | 2 | 18 | B.1 | 0.000018 |
M | 16 | L16L | CtC | TtG | 1 | 18 | B.1 | 0.000009 |
M | 16 | L16L | CtC | TtA | 1 | 18 | B.1 | 0.000009 |
M | 16 | L16L | ctC | ctT | 15 | 17 | P.1 | 0.000236 |
M | 16 | L16L | ctC | ctG | 2 | 17 | P.1 | 0.000032 |
M | 16 | L16L | ctC | ctG | 10 | 16 | AY.5 | 0.000206 |
M | 16 | L16L | ctC | ctA | 5 | 16 | AY.5 | 0.000103 |
M | 16 | L16L | ctC | ctT | 1 | 16 | AY.5 | 0.000021 |
M | 16 | L16L | ctC | ctT | 15 | 16 | B.1.2 | 0.000132 |
M | 16 | L16L | ctC | ctA | 1 | 16 | B.1.2 | 0.000009 |
M | 16 | L16L | ctC | ctT | 15 | 15 | AY.45 | 0.001825 |
M | 16 | L16L | ctC | ctT | 13 | 13 | AY.39 | 0.000321 |
M | 16 | L16L | ctC | ctT | 7 | 12 | AY.43 | 0.000031 |
M | 16 | L16L | ctC | ctA | 5 | 12 | AY.43 | 0.000022 |
M | 16 | L16I | Ctc | Atc | 11 | 12 | B.1.1.7 | 0.00001 |
M | 16 | L16I | CtC | AtT | 1 | 12 | B.1.1.7 | 0.000001 |
M | 16 | L16L | ctC | ctT | 11 | 11 | AZ.2.1 | 0.089431 |
M | 16 | L16L | ctC | ctA | 6 | 11 | B.1.1 | 0.000109 |
M | 16 | L16L | ctC | ctT | 5 | 11 | B.1.1 | 0.000091 |
M | 16 | L16del | CTC | --- | 9 | 9 | B.1.1.7 | 0.000008 |
M | 16 | L16L | ctC | ctT | 8 | 8 | B.1.36.17 | 0.003953 |
M | 16 | L16P | cTc | cCc | 6 | 7 | All | 0.000001 |
M | 16 | L16P | cTC | cCT | 1 | 7 | All | 0 |
M | 16 | L16del | CTC | --- | 7 | 7 | AY.25 | 0.000042 |
M | 16 | L16L | ctC | ctT | 7 | 7 | AY.3 | 0.00007 |
M | 16 | L16L | ctC | ctT | 7 | 7 | AY.75 | 0.000392 |
M | 16 | L16F | Ctc | Ttc | 7 | 7 | B.3 | 0.005814 |
M | 16 | L16S | CTC | TCT | 2 | 6 | All | 0 |
M | 16 | L16S | CTc | TCc | 2 | 6 | All | 0 |
M | 16 | L16S | CTc | AGc | 1 | 6 | All | 0 |
M | 16 | L16S | CTC | TCG | 1 | 6 | All | 0 |
M | 16 | L16del | CTC | --- | 6 | 6 | AY.4 | 0.000009 |
M | 16 | L16F | Ctc | Ttc | 6 | 6 | AY.44 | 0.000037 |
M | 16 | L16L | ctC | ctT | 6 | 6 | AY.47 | 0.000187 |
M | 16 | L16L | ctC | ctT | 6 | 6 | B.1.1.214 | 0.000333 |
M | 16 | L16L | ctC | ctT | 6 | 6 | B.1.1.33 | 0.002525 |
M | 16 | L16F | Ctc | Ttc | 6 | 6 | B.1.351 | 0.000178 |
M | 16 | L16L | ctC | ctT | 6 | 6 | B.1.561 | 0.002382 |
M | 16 | L16I | Ctc | Atc | 6 | 6 | P.1 | 0.000095 |
M | 16 | L16R | cTc | cGc | 4 | 5 | All | 0.000001 |
M | 16 | L16del1 | ctC | ct- | 4 | 5 | All | 0.000001 |
M | 16 | L16V | Ctc | Gtc | 2 | 5 | All | 0 |
M | 16 | L16V | CtC | GtT | 1 | 5 | All | 0 |
M | 16 | L16V | CtC | GtG | 1 | 5 | All | 0 |
M | 16 | L16del1 | CTc | -Cc | 1 | 5 | All | 0 |
M | 16 | L16R | cTC | cGG | 1 | 5 | All | 0 |
M | 16 | L16V | CtC | GtA | 1 | 5 | All | 0 |
M | 16 | L16L | ctC | ctT | 4 | 5 | AY.102 | 0.000106 |
M | 16 | L16L | ctC | ctA | 1 | 5 | AY.102 | 0.000027 |
M | 16 | L16L | ctC | ctT | 5 | 5 | AY.16.1 | 0.00235 |
M | 16 | L16F | Ctc | Ttc | 5 | 5 | AY.39 | 0.000124 |
M | 16 | L16del | CTC | --- | 5 | 5 | AY.43 | 0.000022 |
M | 16 | L16L | ctC | ctT | 5 | 5 | AY.61 | 0.000524 |
M | 16 | L16I | Ctc | Atc | 5 | 5 | B.1 | 0.000046 |
M | 16 | L16del | CTC | --- | 5 | 5 | B.1 | 0.000046 |
M | 16 | L16I | Ctc | Atc | 5 | 5 | B.1.1 | 0.000091 |
M | 16 | L16L | ctC | ctA | 5 | 5 | B.1.1.291 | 0.003712 |
M | 16 | L16L | ctC | ctT | 5 | 5 | B.1.177 | 0.000066 |
M | 16 | L16L | ctC | ctT | 5 | 5 | B.1.351 | 0.000149 |
M | 16 | L16L | ctC | ctT | 5 | 5 | B.1.637 | 0.000365 |
M | 16 | L16L | ctC | ctT | 5 | 5 | C.1.2 | 0.021277 |
M | 16 | L16I | Ctc | Atc | 5 | 5 | P.5 | 0.068493 |
M | 16 | L16H | cTc | cAc | 4 | 4 | All | 0.000001 |
M | 16 | L16Q | cTC | cAA | 2 | 4 | All | 0 |
M | 16 | L16Q | cTC | cAG | 2 | 4 | All | 0 |
M | 16 | L16del | CTC | --- | 4 | 4 | AY.103 | 0.000025 |
M | 16 | L16L | ctC | ctT | 4 | 4 | AY.113 | 0.00057 |
M | 16 | L16L | ctC | ctT | 4 | 4 | AY.27 | 0.000259 |
M | 16 | L16F | Ctc | Ttc | 4 | 4 | AY.4 | 0.000006 |
M | 16 | L16L | ctC | ctT | 4 | 4 | AY.42 | 0.000161 |
M | 16 | L16P | cTc | cCc | 3 | 4 | B.1.1.7 | 0.000003 |
M | 16 | L16S | CTc | TCc | 2 | 4 | B.1.1.7 | 0.000002 |
M | 16 | L16S | CTC | TCT | 2 | 4 | B.1.1.7 | 0.000002 |
M | 16 | L16P | cTC | cCT | 1 | 4 | B.1.1.7 | 0.000001 |
M | 16 | L16L | ctC | ctA | 4 | 4 | B.39 | 0.009324 |
M | 16 | L16F | Ctc | Ttc | 3 | 3 | AY.27 | 0.000194 |
M | 16 | L16L | ctC | ctT | 3 | 3 | AY.29 | 0.000047 |
M | 16 | L16F | Ctc | Ttc | 3 | 3 | AY.43 | 0.000013 |
M | 16 | L16F | Ctc | Ttc | 3 | 3 | AY.5 | 0.000062 |
M | 16 | L16L | ctC | ctT | 3 | 3 | AY.54 | 0.000286 |
M | 16 | L16V | Ctc | Gtc | 1 | 3 | B.1 | 0.000009 |
M | 16 | L16V | CtC | GtG | 1 | 3 | B.1 | 0.000009 |
M | 16 | L16V | CtC | GtA | 1 | 3 | B.1 | 0.000009 |
M | 16 | L16L | ctC | ctT | 3 | 3 | B.1.1.39 | 0.001529 |
M | 16 | L16L | ctC | ctT | 3 | 3 | B.1.1.448 | 0.006098 |
M | 16 | L16F | Ctc | Ttc | 3 | 3 | B.1.221 | 0.000213 |
M | 16 | L16L | ctC | ctT | 3 | 3 | B.1.526 | 0.000071 |
M | 16 | L16F | Ctc | Ttc | 3 | 3 | B.1.617.2 | 0.000011 |
M | 16 | L16L | ctC | ctT | 3 | 3 | C.37 | 0.000348 |
M | 16 | L16del | CTC | --- | 2 | 2 | 0.111111 | |
M | 16 | L16L | ctC | ctT | 2 | 2 | 0.111111 | |
M | 16 | L16del2 | CTc | --c | 2 | 2 | All | 0 |
M | 16 | L16E | CTC | GAA | 1 | 2 | All | 0 |
M | 16 | L16A | CTC | GCT | 1 | 2 | All | 0 |
M | 16 | L16X | CTC | TAG | 1 | 2 | All | 0 |
M | 16 | L16E | CTC | GAG | 1 | 2 | All | 0 |
M | 16 | L16X | CTC | TAA | 1 | 2 | All | 0 |
M | 16 | L16A | CTc | GCc | 1 | 2 | All | 0 |
M | 16 | L16F | Ctc | Ttc | 2 | 2 | AY.102 | 0.000053 |
M | 16 | L16L | ctC | ctA | 2 | 2 | AY.120 | 0.000074 |
M | 16 | L16L | ctC | ctT | 2 | 2 | AY.121 | 0.000271 |
M | 16 | L16L | ctC | ctT | 2 | 2 | AY.20 | 0.000078 |
M | 16 | L16del | CTC | --- | 2 | 2 | AY.3 | 0.00002 |
M | 16 | L16F | Ctc | Ttc | 2 | 2 | AY.3 | 0.00002 |
M | 16 | L16del | CTC | --- | 2 | 2 | AY.4.5 | 0.000215 |
M | 16 | L16del | CTC | --- | 2 | 2 | AY.44 | 0.000012 |
M | 16 | L16L | ctC | ctT | 2 | 2 | AY.48 | 0.00093 |
M | 16 | L16L | ctC | ctT | 2 | 2 | AY.59 | 0.001059 |
M | 16 | L16F | Ctc | Ttc | 2 | 2 | B.1 | 0.000018 |
M | 16 | L16H | cTc | cAc | 2 | 2 | B.1 | 0.000018 |
M | 16 | L16X | CTC | TAA | 1 | 2 | B.1 | 0.000009 |
M | 16 | L16X | CTC | TAG | 1 | 2 | B.1 | 0.000009 |
M | 16 | L16E | CTC | GAA | 1 | 2 | B.1 | 0.000009 |
M | 16 | L16Q | cTC | cAG | 1 | 2 | B.1 | 0.000009 |
M | 16 | L16E | CTC | GAG | 1 | 2 | B.1 | 0.000009 |
M | 16 | L16Q | cTC | cAA | 1 | 2 | B.1 | 0.000009 |
M | 16 | L16F | Ctc | Ttc | 2 | 2 | B.1.1 | 0.000036 |
M | 16 | L16L | ctC | ctT | 2 | 2 | B.1.1.231 | 0.006192 |
M | 16 | L16I | Ctc | Atc | 2 | 2 | B.1.1.241 | 0.004141 |
M | 16 | L16L | ctC | ctT | 2 | 2 | B.1.1.306 | 0.000877 |
M | 16 | L16I | Ctc | Atc | 2 | 2 | B.1.1.397 | 0.004505 |
M | 16 | L16L | ctC | ctT | 2 | 2 | B.1.1.519 | 0.000079 |
M | 16 | L16F | Ctc | Ttc | 2 | 2 | B.1.1.519 | 0.000079 |
M | 16 | L16del1 | ctC | ct- | 2 | 2 | B.1.1.7 | 0.000002 |
M | 16 | L16V | Ctc | Gtc | 1 | 2 | B.1.1.7 | 0.000001 |
M | 16 | L16V | CtC | GtT | 1 | 2 | B.1.1.7 | 0.000001 |
M | 16 | L16A | CTC | GCT | 1 | 2 | B.1.1.7 | 0.000001 |
M | 16 | L16A | CTc | GCc | 1 | 2 | B.1.1.7 | 0.000001 |
M | 16 | L16F | Ctc | Ttc | 2 | 2 | B.1.177 | 0.000026 |
M | 16 | L16F | Ctc | Ttc | 2 | 2 | B.1.36.21 | 0.00432 |
M | 16 | L16L | ctC | ctT | 2 | 2 | B.1.429 | 0.000047 |
M | 16 | L16L | ctC | ctT | 2 | 2 | B.1.605 | 0.011905 |
M | 16 | L16L | ctC | ctT | 1 | 2 | B.1.617.1 | 0.000129 |
M | 16 | L16L | ctC | ctA | 1 | 2 | B.1.617.1 | 0.000129 |
M | 16 | L16I | Ctc | Atc | 2 | 2 | B.1.617.2 | 0.000008 |
M | 16 | L16del | CTC | --- | 2 | 2 | P.1 | 0.000032 |
M | 16 | L16L | ctC | ctT | 2 | 2 | P.1.14 | 0.000096 |
M | 16 | L16del1 | CTc | -Cc | 1 | 1 | A | 0.000387 |
M | 16 | L16L | ctC | ctT | 1 | 1 | A.1 | 0.000282 |
M | 16 | L16F | Ctc | Ttc | 1 | 1 | A.2 | 0.000662 |
M | 16 | L16M | CtC | AtG | 1 | 1 | A.21 | 0.00277 |
M | 16 | L16del | CTC | --- | 1 | 1 | A.23.1 | 0.000704 |
M | 16 | L16F | Ctc | Ttc | 1 | 1 | A.28 | 0.002646 |
M | 16 | L16C | CTc | TGc | 1 | 1 | All | 0 |
M | 16 | L16M | CtC | AtG | 1 | 1 | All | 0 |
M | 16 | L16Y | CTc | TAc | 1 | 1 | All | 0 |
M | 16 | L16D | CTc | GAc | 1 | 1 | All | 0 |
M | 16 | L16N | CTc | AAc | 1 | 1 | All | 0 |
M | 16 | L16del | CTC | --- | 1 | 1 | AY.100 | 0.000046 |
M | 16 | L16L | ctC | ctT | 1 | 1 | AY.100 | 0.000046 |
M | 16 | L16I | Ctc | Atc | 1 | 1 | AY.103 | 0.000006 |
M | 16 | L16F | Ctc | Ttc | 1 | 1 | AY.103 | 0.000006 |
M | 16 | L16L | ctC | ctT | 1 | 1 | AY.108 | 0.001103 |
M | 16 | L16del | CTC | --- | 1 | 1 | AY.108 | 0.001103 |
M | 16 | L16del | CTC | --- | 1 | 1 | AY.118 | 0.000063 |
M | 16 | L16del | CTC | --- | 1 | 1 | AY.120 | 0.000037 |
M | 16 | L16L | ctC | ctT | 1 | 1 | AY.120.2.1 | 0.000498 |
M | 16 | L16L | ctC | ctT | 1 | 1 | AY.23 | 0.00007 |
M | 16 | L16L | ctC | ctT | 1 | 1 | AY.24 | 0.000431 |
M | 16 | L16del2 | CTc | --c | 1 | 1 | AY.25 | 0.000006 |
M | 16 | L16Q | cTC | cAA | 1 | 1 | AY.26 | 0.000028 |
M | 16 | L16F | Ctc | Ttc | 1 | 1 | AY.29 | 0.000016 |
M | 16 | L16I | Ctc | Atc | 1 | 1 | AY.3 | 0.00001 |
M | 16 | L16L | ctC | ctT | 1 | 1 | AY.3.1 | 0.000085 |
M | 16 | L16I | Ctc | Atc | 1 | 1 | AY.30 | 0.000396 |
M | 16 | L16del | CTC | --- | 1 | 1 | AY.39 | 0.000025 |
M | 16 | L16L | ctC | ctT | 1 | 1 | AY.39.1 | 0.00004 |
M | 16 | L16I | Ctc | Atc | 1 | 1 | AY.4 | 0.000002 |
M | 16 | L16del | CTC | --- | 1 | 1 | AY.4.2 | 0.000022 |
M | 16 | L16del1 | ctC | ct- | 1 | 1 | AY.42 | 0.00004 |
M | 16 | L16I | Ctc | Atc | 1 | 1 | AY.43 | 0.000004 |
M | 16 | L16S | CTC | TCG | 1 | 1 | AY.44 | 0.000006 |
M | 16 | L16del | CTC | --- | 1 | 1 | AY.46.6 | 0.000072 |
M | 16 | L16L | ctC | ctT | 1 | 1 | AY.46.6 | 0.000072 |
M | 16 | L16del | CTC | --- | 1 | 1 | AY.5.3 | 0.000337 |
M | 16 | L16L | ctC | ctT | 1 | 1 | AY.51 | 0.000909 |
M | 16 | L16L | ctC | ctT | 1 | 1 | AY.52 | 0.000814 |
M | 16 | L16H | cTc | cAc | 1 | 1 | AY.55 | 0.000917 |
M | 16 | L16F | Ctc | Ttc | 1 | 1 | AY.6 | 0.000041 |
M | 16 | L16F | Ctc | Ttc | 1 | 1 | AY.61 | 0.000105 |
M | 16 | L16L | ctC | ctT | 1 | 1 | AY.62 | 0.000436 |
M | 16 | L16del | CTC | --- | 1 | 1 | AY.68 | 0.000274 |
M | 16 | L16L | ctC | ctT | 1 | 1 | AY.73 | 0.000665 |
M | 16 | L16del | CTC | --- | 1 | 1 | AY.74 | 0.000116 |
M | 16 | L16del | CTC | --- | 1 | 1 | AY.75 | 0.000056 |
M | 16 | L16L | ctC | ctT | 1 | 1 | AY.85 | 0.000427 |
M | 16 | L16del | CTC | --- | 1 | 1 | AY.9 | 0.000068 |
M | 16 | L16R | cTC | cGG | 1 | 1 | AY.9.2 | 0.000037 |
M | 16 | L16Y | CTc | TAc | 1 | 1 | B.1 | 0.000009 |
M | 16 | L16P | cTc | cCc | 1 | 1 | B.1 | 0.000009 |
M | 16 | L16D | CTc | GAc | 1 | 1 | B.1 | 0.000009 |
M | 16 | L16R | cTc | cGc | 1 | 1 | B.1.1 | 0.000018 |
M | 16 | L16H | cTc | cAc | 1 | 1 | B.1.1 | 0.000018 |
M | 16 | L16S | CTc | AGc | 1 | 1 | B.1.1 | 0.000018 |
M | 16 | L16N | CTc | AAc | 1 | 1 | B.1.1 | 0.000018 |
M | 16 | L16C | CTc | TGc | 1 | 1 | B.1.1 | 0.000018 |
M | 16 | L16del | CTC | --- | 1 | 1 | B.1.1.139 | 0.022727 |
M | 16 | L16L | ctC | ctT | 1 | 1 | B.1.1.169 | 0.018182 |
M | 16 | L16F | Ctc | Ttc | 1 | 1 | B.1.1.192 | 0.002309 |
M | 16 | L16I | Ctc | Atc | 1 | 1 | B.1.1.204 | 0.00304 |
M | 16 | L16F | Ctc | Ttc | 1 | 1 | B.1.1.263 | 0.001558 |
M | 16 | L16del | CTC | --- | 1 | 1 | B.1.1.288 | 0.001916 |
M | 16 | L16L | ctC | ctT | 1 | 1 | B.1.1.301 | 0.001179 |
M | 16 | L16del | CTC | --- | 1 | 1 | B.1.1.312 | 0.001912 |
M | 16 | L16L | ctC | ctT | 1 | 1 | B.1.1.369 | 0.000446 |
M | 16 | L16I | Ctc | Atc | 1 | 1 | B.1.1.370 | 0.012658 |
M | 16 | L16L | ctC | ctT | 1 | 1 | B.1.1.389 | 0.006061 |
M | 16 | L16L | ctC | ctT | 1 | 1 | B.1.1.4 | 0.002976 |
M | 16 | L16L | ctC | ctT | 1 | 1 | B.1.1.402 | 0.011111 |
M | 16 | L16del | CTC | --- | 1 | 1 | B.1.1.432 | 0.001266 |
M | 16 | L16I | Ctc | Atc | 1 | 1 | B.1.1.519 | 0.00004 |
M | 16 | L16del2 | CTc | --c | 1 | 1 | B.1.1.7 | 0.000001 |
M | 16 | L16F | Ctc | Ttc | 1 | 1 | B.1.139 | 0.000733 |
M | 16 | L16del | CTC | --- | 1 | 1 | B.1.160 | 0.000031 |
M | 16 | L16del | CTC | --- | 1 | 1 | B.1.161 | 0.017241 |
M | 16 | L16del | CTC | --- | 1 | 1 | B.1.177.10 | 0.000878 |
M | 16 | L16del | CTC | --- | 1 | 1 | B.1.177.16 | 0.000664 |
M | 16 | L16F | Ctc | Ttc | 1 | 1 | B.1.177.58 | 0.001332 |
M | 16 | L16del | CTC | --- | 1 | 1 | B.1.177.83 | 0.001481 |
M | 16 | L16R | cTc | cGc | 1 | 1 | B.1.181 | 0.019608 |
M | 16 | L16del | CTC | --- | 1 | 1 | B.1.2 | 0.000009 |
M | 16 | L16I | Ctc | Atc | 1 | 1 | B.1.2 | 0.000009 |
M | 16 | L16F | Ctc | Ttc | 1 | 1 | B.1.2 | 0.000009 |
M | 16 | L16L | ctC | ctT | 1 | 1 | B.1.221 | 0.000071 |
M | 16 | L16del | CTC | --- | 1 | 1 | B.1.23 | 0.006061 |
M | 16 | L16L | ctC | ctT | 1 | 1 | B.1.234 | 0.000132 |
M | 16 | L16I | Ctc | Atc | 1 | 1 | B.1.239 | 0.001221 |
M | 16 | L16L | ctC | ctT | 1 | 1 | B.1.243 | 0.00007 |
M | 16 | L16L | ctC | ctT | 1 | 1 | B.1.258 | 0.000067 |
M | 16 | L16del | CTC | --- | 1 | 1 | B.1.258 | 0.000067 |
M | 16 | L16del | CTC | --- | 1 | 1 | B.1.258.16 | 0.001637 |
M | 16 | L16I | Ctc | Atc | 1 | 1 | B.1.258.17 | 0.000104 |
M | 16 | L16F | Ctc | Ttc | 1 | 1 | B.1.311 | 0.000275 |
M | 16 | L16I | Ctc | Atc | 1 | 1 | B.1.351 | 0.00003 |
M | 16 | L16L | ctC | ctT | 1 | 1 | B.1.36.31 | 0.001751 |
M | 16 | L16del | CTC | --- | 1 | 1 | B.1.369 | 0.000285 |
M | 16 | L16F | Ctc | Ttc | 1 | 1 | B.1.39 | 0.003906 |
M | 16 | L16I | Ctc | Atc | 1 | 1 | B.1.398 | 0.002976 |
M | 16 | L16L | ctC | ctT | 1 | 1 | B.1.405 | 0.012346 |
M | 16 | L16Q | cTC | cAG | 1 | 1 | B.1.411 | 0.003704 |
M | 16 | L16F | Ctc | Ttc | 1 | 1 | B.1.427 | 0.00005 |
M | 16 | L16I | Ctc | Atc | 1 | 1 | B.1.429 | 0.000024 |
M | 16 | L16del | CTC | --- | 1 | 1 | B.1.433 | 0.003195 |
M | 16 | L16L | ctC | ctT | 1 | 1 | B.1.456 | 0.003268 |
M | 16 | L16L | ctC | ctA | 1 | 1 | B.1.525 | 0.000113 |
M | 16 | L16del | CTC | --- | 1 | 1 | B.1.526 | 0.000024 |
M | 16 | L16L | ctC | ctT | 1 | 1 | B.1.564 | 0.000426 |
M | 16 | L16L | ctC | ctT | 1 | 1 | B.1.565 | 0.00081 |
M | 16 | L16F | CtC | TtT | 1 | 1 | B.1.577 | 0.000687 |
M | 16 | L16L | ctC | ctT | 1 | 1 | B.1.599 | 0.00365 |
M | 16 | L16F | Ctc | Ttc | 1 | 1 | B.1.609 | 0.000479 |
M | 16 | L16R | cTc | cGc | 1 | 1 | B.1.609 | 0.000479 |
M | 16 | L16del1 | ctC | ct- | 1 | 1 | B.1.617.2 | 0.000004 |
M | 16 | L16P | cTc | cCc | 1 | 1 | B.1.617.2 | 0.000004 |
M | 16 | L16del | CTC | --- | 1 | 1 | B.1.617.2 | 0.000004 |
M | 16 | L16L | ctC | ctT | 1 | 1 | B.1.621 | 0.000089 |
M | 16 | L16F | Ctc | Ttc | 1 | 1 | B.40 | 0.000364 |
M | 16 | L16P | cTc | cCc | 1 | 1 | B.40 | 0.000364 |
M | 16 | L16F | Ctc | Ttc | 1 | 1 | B.55 | 0.00295 |
M | 16 | L16R | cTc | cGc | 1 | 1 | B.6 | 0.00091 |
M | 16 | L16L | ctC | ctT | 1 | 1 | C.13 | 0.025641 |
M | 16 | L16I | Ctc | Atc | 1 | 1 | C.4 | 0.01 |
M | 16 | L16del | CTC | --- | 1 | 1 | P.1.15 | 0.000232 |
M | 16 | L16L | ctC | ctT | 1 | 1 | P.1.17 | 0.000162 |
M | 16 | L16L | ctC | ctT | 1 | 1 | P.1.7 | 0.000319 |
M | 16 | L16L | ctC | ctT | 1 | 1 | P.2 | 0.000187 |
M | 16 | L16L | ctC | ctT | 1 | 1 | Q.1 | 0.000126 |
M | 16 | L16del | CTC | --- | 1 | 1 | Q.2 | 0.000613 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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