CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = M : CodonNum = 16

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
M16L16LsynctCctT197018980.96345226568-26570
M16L16LsynctCctA1970550.027918826568-26570
M16L16LsynctCctG1970140.007106626568-26570
M16L16LsynCtCTtA197020.0010152326568-26570
M16L16LsynCtCTtG197010.00050761426568-26570
M16L16InonsynCtcAtc2652630.99245326568-26570
M16L16InonsynCtCAtT26520.0075471726568-26570
M16L16FnonsynCtcTtc94900.95744726568-26570
M16L16FnonsynCtCTtT9440.042553226568-26570
M16L16deldelCTC---7878126568-26570
M16L16PnonsyncTccCc760.85714326568-26570
M16L16PnonsyncTCcCT710.14285726568-26570
M16L16SnonsynCTcTCc620.33333326568-26570
M16L16SnonsynCTCTCT620.33333326568-26570
M16L16SnonsynCTCTCG610.16666726568-26570
M16L16SnonsynCTcAGc610.16666726568-26570
M16L16RnonsyncTccGc540.826568-26570
M16L16del1delctCct-540.826568-26570
M16L16VnonsynCtcGtc520.426568-26570
M16L16VnonsynCtCGtT510.226568-26570
M16L16del1delCTc-Cc510.226568-26570
M16L16VnonsynCtCGtA510.226568-26570
M16L16VnonsynCtCGtG510.226568-26570
M16L16RnonsyncTCcGG510.226568-26570
M16L16HnonsyncTccAc44126568-26570
M16L16QnonsyncTCcAG420.526568-26570
M16L16QnonsyncTCcAA420.526568-26570
M16L16del2delCTc--c22126568-26570
M16L16XnonsynCTCTAG210.526568-26570
M16L16AnonsynCTcGCc210.526568-26570
M16L16AnonsynCTCGCT210.526568-26570
M16L16EnonsynCTCGAA210.526568-26570
M16L16EnonsynCTCGAG210.526568-26570
M16L16XnonsynCTCTAA210.526568-26570
M16L16YnonsynCTcTAc11126568-26570
M16L16DnonsynCTcGAc11126568-26570
M16L16NnonsynCTcAAc11126568-26570
M16L16MnonsynCtCAtG11126568-26570
M16L16CnonsynCTcTGc11126568-26570

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
M16L16LctCctT18981970All0.000363
M16L16LctCctA551970All0.000011
M16L16LctCctG141970All0.000003
M16L16LCtCTtA21970All0
M16L16LCtCTtG11970All0
M16L16LctCctT587587AY.740.067885
M16L16LctCctT306306AY.440.001863
M16L16ICtcAtc263265All0.00005
M16L16ICtCAtT2265All0
M16L16LctCctT228229B.1.1.70.000204
M16L16LctCctA1229B.1.1.70.000001
M16L16LctCctT184192AY.40.000286
M16L16LctCctA7192AY.40.000011
M16L16LCtCTtA1192AY.40.000002
M16L16ICtcAtc169170AT.10.866667
M16L16ICtCAtT1170AT.10.005128
M16L16LctCctT140150B.1.617.20.000527
M16L16LctCctA10150B.1.617.20.000038
M16L16LctCctT114115AY.250.000686
M16L16LctCctA1115AY.250.000006
M16L16FCtcTtc9094All0.000017
M16L16FCtCTtT494All0.000001
M16L16delCTC---7878All0.000015
M16L16LctCctT5353AY.350.012351
M16L16LctCctT2526AY.1030.000155
M16L16LctCctA126AY.1030.000006
M16L16ICtcAtc2222B.1.6370.001608
M16L16FCtcTtc1619B.1.1.70.000014
M16L16FCtCTtT319B.1.1.70.000003
M16L16ICtcAtc1919B.1.5250.00215
M16L16LctCctT1018B.10.000092
M16L16LctCctA418B.10.000037
M16L16LctCctG218B.10.000018
M16L16LCtCTtG118B.10.000009
M16L16LCtCTtA118B.10.000009
M16L16LctCctT1517P.10.000236
M16L16LctCctG217P.10.000032
M16L16LctCctG1016AY.50.000206
M16L16LctCctA516AY.50.000103
M16L16LctCctT116AY.50.000021
M16L16LctCctT1516B.1.20.000132
M16L16LctCctA116B.1.20.000009
M16L16LctCctT1515AY.450.001825
M16L16LctCctT1313AY.390.000321
M16L16LctCctT712AY.430.000031
M16L16LctCctA512AY.430.000022
M16L16ICtcAtc1112B.1.1.70.00001
M16L16ICtCAtT112B.1.1.70.000001
M16L16LctCctT1111AZ.2.10.089431
M16L16LctCctA611B.1.10.000109
M16L16LctCctT511B.1.10.000091
M16L16delCTC---99B.1.1.70.000008
M16L16LctCctT88B.1.36.170.003953
M16L16PcTccCc67All0.000001
M16L16PcTCcCT17All0
M16L16delCTC---77AY.250.000042
M16L16LctCctT77AY.30.00007
M16L16LctCctT77AY.750.000392
M16L16FCtcTtc77B.30.005814
M16L16SCTCTCT26All0
M16L16SCTcTCc26All0
M16L16SCTcAGc16All0
M16L16SCTCTCG16All0
M16L16delCTC---66AY.40.000009
M16L16FCtcTtc66AY.440.000037
M16L16LctCctT66AY.470.000187
M16L16LctCctT66B.1.1.2140.000333
M16L16LctCctT66B.1.1.330.002525
M16L16FCtcTtc66B.1.3510.000178
M16L16LctCctT66B.1.5610.002382
M16L16ICtcAtc66P.10.000095
M16L16RcTccGc45All0.000001
M16L16del1ctCct-45All0.000001
M16L16VCtcGtc25All0
M16L16VCtCGtT15All0
M16L16VCtCGtG15All0
M16L16del1CTc-Cc15All0
M16L16RcTCcGG15All0
M16L16VCtCGtA15All0
M16L16LctCctT45AY.1020.000106
M16L16LctCctA15AY.1020.000027
M16L16LctCctT55AY.16.10.00235
M16L16FCtcTtc55AY.390.000124
M16L16delCTC---55AY.430.000022
M16L16LctCctT55AY.610.000524
M16L16ICtcAtc55B.10.000046
M16L16delCTC---55B.10.000046
M16L16ICtcAtc55B.1.10.000091
M16L16LctCctA55B.1.1.2910.003712
M16L16LctCctT55B.1.1770.000066
M16L16LctCctT55B.1.3510.000149
M16L16LctCctT55B.1.6370.000365
M16L16LctCctT55C.1.20.021277
M16L16ICtcAtc55P.50.068493
M16L16HcTccAc44All0.000001
M16L16QcTCcAA24All0
M16L16QcTCcAG24All0
M16L16delCTC---44AY.1030.000025
M16L16LctCctT44AY.1130.00057
M16L16LctCctT44AY.270.000259
M16L16FCtcTtc44AY.40.000006
M16L16LctCctT44AY.420.000161
M16L16PcTccCc34B.1.1.70.000003
M16L16SCTcTCc24B.1.1.70.000002
M16L16SCTCTCT24B.1.1.70.000002
M16L16PcTCcCT14B.1.1.70.000001
M16L16LctCctA44B.390.009324
M16L16FCtcTtc33AY.270.000194
M16L16LctCctT33AY.290.000047
M16L16FCtcTtc33AY.430.000013
M16L16FCtcTtc33AY.50.000062
M16L16LctCctT33AY.540.000286
M16L16VCtcGtc13B.10.000009
M16L16VCtCGtG13B.10.000009
M16L16VCtCGtA13B.10.000009
M16L16LctCctT33B.1.1.390.001529
M16L16LctCctT33B.1.1.4480.006098
M16L16FCtcTtc33B.1.2210.000213
M16L16LctCctT33B.1.5260.000071
M16L16FCtcTtc33B.1.617.20.000011
M16L16LctCctT33C.370.000348
M16L16delCTC---220.111111
M16L16LctCctT220.111111
M16L16del2CTc--c22All0
M16L16ECTCGAA12All0
M16L16ACTCGCT12All0
M16L16XCTCTAG12All0
M16L16ECTCGAG12All0
M16L16XCTCTAA12All0
M16L16ACTcGCc12All0
M16L16FCtcTtc22AY.1020.000053
M16L16LctCctA22AY.1200.000074
M16L16LctCctT22AY.1210.000271
M16L16LctCctT22AY.200.000078
M16L16delCTC---22AY.30.00002
M16L16FCtcTtc22AY.30.00002
M16L16delCTC---22AY.4.50.000215
M16L16delCTC---22AY.440.000012
M16L16LctCctT22AY.480.00093
M16L16LctCctT22AY.590.001059
M16L16FCtcTtc22B.10.000018
M16L16HcTccAc22B.10.000018
M16L16XCTCTAA12B.10.000009
M16L16XCTCTAG12B.10.000009
M16L16ECTCGAA12B.10.000009
M16L16QcTCcAG12B.10.000009
M16L16ECTCGAG12B.10.000009
M16L16QcTCcAA12B.10.000009
M16L16FCtcTtc22B.1.10.000036
M16L16LctCctT22B.1.1.2310.006192
M16L16ICtcAtc22B.1.1.2410.004141
M16L16LctCctT22B.1.1.3060.000877
M16L16ICtcAtc22B.1.1.3970.004505
M16L16LctCctT22B.1.1.5190.000079
M16L16FCtcTtc22B.1.1.5190.000079
M16L16del1ctCct-22B.1.1.70.000002
M16L16VCtcGtc12B.1.1.70.000001
M16L16VCtCGtT12B.1.1.70.000001
M16L16ACTCGCT12B.1.1.70.000001
M16L16ACTcGCc12B.1.1.70.000001
M16L16FCtcTtc22B.1.1770.000026
M16L16FCtcTtc22B.1.36.210.00432
M16L16LctCctT22B.1.4290.000047
M16L16LctCctT22B.1.6050.011905
M16L16LctCctT12B.1.617.10.000129
M16L16LctCctA12B.1.617.10.000129
M16L16ICtcAtc22B.1.617.20.000008
M16L16delCTC---22P.10.000032
M16L16LctCctT22P.1.140.000096
M16L16del1CTc-Cc11A0.000387
M16L16LctCctT11A.10.000282
M16L16FCtcTtc11A.20.000662
M16L16MCtCAtG11A.210.00277
M16L16delCTC---11A.23.10.000704
M16L16FCtcTtc11A.280.002646
M16L16CCTcTGc11All0
M16L16MCtCAtG11All0
M16L16YCTcTAc11All0
M16L16DCTcGAc11All0
M16L16NCTcAAc11All0
M16L16delCTC---11AY.1000.000046
M16L16LctCctT11AY.1000.000046
M16L16ICtcAtc11AY.1030.000006
M16L16FCtcTtc11AY.1030.000006
M16L16LctCctT11AY.1080.001103
M16L16delCTC---11AY.1080.001103
M16L16delCTC---11AY.1180.000063
M16L16delCTC---11AY.1200.000037
M16L16LctCctT11AY.120.2.10.000498
M16L16LctCctT11AY.230.00007
M16L16LctCctT11AY.240.000431
M16L16del2CTc--c11AY.250.000006
M16L16QcTCcAA11AY.260.000028
M16L16FCtcTtc11AY.290.000016
M16L16ICtcAtc11AY.30.00001
M16L16LctCctT11AY.3.10.000085
M16L16ICtcAtc11AY.300.000396
M16L16delCTC---11AY.390.000025
M16L16LctCctT11AY.39.10.00004
M16L16ICtcAtc11AY.40.000002
M16L16delCTC---11AY.4.20.000022
M16L16del1ctCct-11AY.420.00004
M16L16ICtcAtc11AY.430.000004
M16L16SCTCTCG11AY.440.000006
M16L16delCTC---11AY.46.60.000072
M16L16LctCctT11AY.46.60.000072
M16L16delCTC---11AY.5.30.000337
M16L16LctCctT11AY.510.000909
M16L16LctCctT11AY.520.000814
M16L16HcTccAc11AY.550.000917
M16L16FCtcTtc11AY.60.000041
M16L16FCtcTtc11AY.610.000105
M16L16LctCctT11AY.620.000436
M16L16delCTC---11AY.680.000274
M16L16LctCctT11AY.730.000665
M16L16delCTC---11AY.740.000116
M16L16delCTC---11AY.750.000056
M16L16LctCctT11AY.850.000427
M16L16delCTC---11AY.90.000068
M16L16RcTCcGG11AY.9.20.000037
M16L16YCTcTAc11B.10.000009
M16L16PcTccCc11B.10.000009
M16L16DCTcGAc11B.10.000009
M16L16RcTccGc11B.1.10.000018
M16L16HcTccAc11B.1.10.000018
M16L16SCTcAGc11B.1.10.000018
M16L16NCTcAAc11B.1.10.000018
M16L16CCTcTGc11B.1.10.000018
M16L16delCTC---11B.1.1.1390.022727
M16L16LctCctT11B.1.1.1690.018182
M16L16FCtcTtc11B.1.1.1920.002309
M16L16ICtcAtc11B.1.1.2040.00304
M16L16FCtcTtc11B.1.1.2630.001558
M16L16delCTC---11B.1.1.2880.001916
M16L16LctCctT11B.1.1.3010.001179
M16L16delCTC---11B.1.1.3120.001912
M16L16LctCctT11B.1.1.3690.000446
M16L16ICtcAtc11B.1.1.3700.012658
M16L16LctCctT11B.1.1.3890.006061
M16L16LctCctT11B.1.1.40.002976
M16L16LctCctT11B.1.1.4020.011111
M16L16delCTC---11B.1.1.4320.001266
M16L16ICtcAtc11B.1.1.5190.00004
M16L16del2CTc--c11B.1.1.70.000001
M16L16FCtcTtc11B.1.1390.000733
M16L16delCTC---11B.1.1600.000031
M16L16delCTC---11B.1.1610.017241
M16L16delCTC---11B.1.177.100.000878
M16L16delCTC---11B.1.177.160.000664
M16L16FCtcTtc11B.1.177.580.001332
M16L16delCTC---11B.1.177.830.001481
M16L16RcTccGc11B.1.1810.019608
M16L16delCTC---11B.1.20.000009
M16L16ICtcAtc11B.1.20.000009
M16L16FCtcTtc11B.1.20.000009
M16L16LctCctT11B.1.2210.000071
M16L16delCTC---11B.1.230.006061
M16L16LctCctT11B.1.2340.000132
M16L16ICtcAtc11B.1.2390.001221
M16L16LctCctT11B.1.2430.00007
M16L16LctCctT11B.1.2580.000067
M16L16delCTC---11B.1.2580.000067
M16L16delCTC---11B.1.258.160.001637
M16L16ICtcAtc11B.1.258.170.000104
M16L16FCtcTtc11B.1.3110.000275
M16L16ICtcAtc11B.1.3510.00003
M16L16LctCctT11B.1.36.310.001751
M16L16delCTC---11B.1.3690.000285
M16L16FCtcTtc11B.1.390.003906
M16L16ICtcAtc11B.1.3980.002976
M16L16LctCctT11B.1.4050.012346
M16L16QcTCcAG11B.1.4110.003704
M16L16FCtcTtc11B.1.4270.00005
M16L16ICtcAtc11B.1.4290.000024
M16L16delCTC---11B.1.4330.003195
M16L16LctCctT11B.1.4560.003268
M16L16LctCctA11B.1.5250.000113
M16L16delCTC---11B.1.5260.000024
M16L16LctCctT11B.1.5640.000426
M16L16LctCctT11B.1.5650.00081
M16L16FCtCTtT11B.1.5770.000687
M16L16LctCctT11B.1.5990.00365
M16L16FCtcTtc11B.1.6090.000479
M16L16RcTccGc11B.1.6090.000479
M16L16del1ctCct-11B.1.617.20.000004
M16L16PcTccCc11B.1.617.20.000004
M16L16delCTC---11B.1.617.20.000004
M16L16LctCctT11B.1.6210.000089
M16L16FCtcTtc11B.400.000364
M16L16PcTccCc11B.400.000364
M16L16FCtcTtc11B.550.00295
M16L16RcTccGc11B.60.00091
M16L16LctCctT11C.130.025641
M16L16ICtcAtc11C.40.01
M16L16delCTC---11P.1.150.000232
M16L16LctCctT11P.1.170.000162
M16L16LctCctT11P.1.70.000319
M16L16LctCctT11P.20.000187
M16L16LctCctT11Q.10.000126
M16L16delCTC---11Q.20.000613