CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = M : CodonNum = 155

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
M	155	H155Y		nonsyn	Cat	Tat	4208	4208	1	26985-26987
M	155	H155H		syn	caT	caC	3706	3706	1	26985-26987
M	155	H155R		nonsyn	cAt	cGt	347	347	1	26985-26987
M	155	H155N		nonsyn	Cat	Aat	177	177	1	26985-26987
M	155	H155del		del	CAT	---	135	135	1	26985-26987
M	155	H155L		nonsyn	cAt	cTt	42	41	0.97619	26985-26987
M	155	H155L		nonsyn	CAT	TTA	42	1	0.0238095	26985-26987
M	155	H155P		nonsyn	cAt	cCt	30	30	1	26985-26987
M	155	H155Q		nonsyn	caT	caG	24	18	0.75	26985-26987
M	155	H155Q		nonsyn	caT	caA	24	6	0.25	26985-26987
M	155	H155D		nonsyn	Cat	Gat	3	3	1	26985-26987
M	155	H155del1		del	caT	ca-	3	2	0.666667	26985-26987
M	155	H155del1		del	cAT	cG-	3	1	0.333333	26985-26987
M	155	H155I		nonsyn	CAT	ATC	1	1	1	26985-26987
M	155	H155S		nonsyn	CAt	TCt	1	1	1	26985-26987
M	155	H155G		nonsyn	CAt	GGt	1	1	1	26985-26987
M	155	H155del2		del	CAt	--t	1	1	1	26985-26987

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
M	155	H155Y	Cat	Tat	4208	4208	All	0.000805
M	155	H155H	caT	caC	3706	3706	All	0.000709
M	155	H155H	caT	caC	2587	2587	AY.29	0.040806
M	155	H155Y	Cat	Tat	766	766	B.1.1.7	0.000686
M	155	H155Y	Cat	Tat	592	592	B.1.351	0.017598
M	155	H155R	cAt	cGt	347	347	All	0.000066
M	155	H155Y	Cat	Tat	314	314	B.1.160	0.009793
M	155	H155Y	Cat	Tat	307	307	B.1.1.519	0.012191
M	155	H155Y	Cat	Tat	267	267	B.1.258	0.017768
M	155	H155H	caT	caC	265	265	B.1.617.2	0.000998
M	155	H155R	cAt	cGt	244	244	AY.44	0.001485
M	155	H155Y	Cat	Tat	227	227	B.1.1.434	0.079122
M	155	H155N	Cat	Aat	177	177	All	0.000034
M	155	H155Y	Cat	Tat	170	170	B.1.2	0.001497
M	155	H155Y	Cat	Tat	162	162	AY.9.2	0.00595
M	155	H155Y	Cat	Tat	136	136	AY.4	0.000212
M	155	H155del	CAT	---	135	135	All	0.000026
M	155	H155H	caT	caC	128	128	AY.98.1	0.006199
M	155	H155H	caT	caC	121	121	P.1.14	0.005784
M	155	H155del	CAT	---	114	114	B.1.177.21	0.008718
M	155	H155Y	Cat	Tat	102	102	B.1.632	0.684564
M	155	H155H	caT	caC	94	94	B.1.1.7	0.000084
M	155	H155H	caT	caC	88	88	AY.111	0.016117
M	155	H155Y	Cat	Tat	87	87	AY.43	0.000385
M	155	H155H	caT	caC	87	87	AY.75	0.004874
M	155	H155Y	Cat	Tat	74	74	B.1.617.2	0.000279
M	155	H155Y	Cat	Tat	57	57	B.1	0.000522
M	155	H155Y	Cat	Tat	54	54	B.1.177	0.000711
M	155	H155H	caT	caC	49	49	AY.43	0.000217
M	155	H155Y	Cat	Tat	44	44	AY.103	0.000273
M	155	H155L	cAt	cTt	41	42	All	0.000008
M	155	H155L	CAT	TTA	1	42	All	0
M	155	H155Y	Cat	Tat	42	42	AY.25	0.000253
M	155	H155H	caT	caC	41	41	AY.4	0.000064
M	155	H155Y	Cat	Tat	40	40	B.1.429	0.000941
M	155	H155R	cAt	cGt	38	38	AY.103	0.000236
M	155	H155N	Cat	Aat	37	37	AY.4	0.000058
M	155	H155N	Cat	Aat	36	36	AY.25	0.000217
M	155	H155Y	Cat	Tat	36	36	AY.44	0.000219
M	155	H155Y	Cat	Tat	32	32	AY.5	0.000661
M	155	H155Y	Cat	Tat	31	31	B.1.1.310	0.469697
M	155	H155P	cAt	cCt	30	30	All	0.000006
M	155	H155Y	Cat	Tat	30	30	AY.6	0.001234
M	155	H155Y	Cat	Tat	28	28	B.1.526	0.000658
M	155	H155H	caT	caC	27	27	AY.29.1	0.005954
M	155	H155Y	Cat	Tat	27	27	B.1.1	0.00049
M	155	H155P	cAt	cCt	27	27	B.1.1.7	0.000024
M	155	H155Y	Cat	Tat	27	27	B.1.146	0.114407
M	155	H155Q	caT	caG	18	24	All	0.000003
M	155	H155Q	caT	caA	6	24	All	0.000001
M	155	H155Y	Cat	Tat	23	23	B.1.400	0.009867
M	155	H155H	caT	caC	22	22	AY.25	0.000132
M	155	H155Y	Cat	Tat	22	22	P.1	0.000347
M	155	H155Y	Cat	Tat	21	21	AY.26	0.000595
M	155	H155H	caT	caC	19	19	B.1.1.519	0.000755
M	155	H155Y	Cat	Tat	18	18	AY.102	0.000477
M	155	H155Y	Cat	Tat	18	18	B.1.258.17	0.001871
M	155	H155Y	Cat	Tat	15	15	AY.29	0.000237
M	155	H155del	CAT	---	14	14	B.1.1.7	0.000013
M	155	H155N	Cat	Aat	13	13	B.1.617.2	0.000049
M	155	H155Y	Cat	Tat	12	12	AY.39	0.000297
M	155	H155R	cAt	cGt	12	12	B.1.617.2	0.000045
M	155	H155R	cAt	cGt	11	11	AY.4	0.000017
M	155	H155Y	Cat	Tat	11	11	B.1.232	0.005911
M	155	H155Y	Cat	Tat	11	11	B.1.427	0.000555
M	155	H155N	Cat	Aat	10	10	AY.103	0.000062
M	155	H155Y	Cat	Tat	10	10	AY.20	0.000389
M	155	H155Y	Cat	Tat	10	10	B.1.1.214	0.000555
M	155	H155Y	Cat	Tat	10	10	B.1.1.284	0.001074
M	155	H155Y	Cat	Tat	9	9	B.1.177.6	0.008789
M	155	H155Y	Cat	Tat	9	9	B.1.596	0.000784
M	155	H155Y	Cat	Tat	8	8	AY.3	0.00008
M	155	H155Y	Cat	Tat	8	8	AY.46	0.000833
M	155	H155H	caT	caC	8	8	B.1	0.000073
M	155	H155Y	Cat	Tat	8	8	B.1.1.305	0.030888
M	155	H155Y	Cat	Tat	8	8	B.1.214.2	0.004796
M	155	H155Y	Cat	Tat	8	8	B.1.466.2	0.00313
M	155	H155H	caT	caC	8	8	C.36	0.007286
M	155	H155Y	Cat	Tat	8	8	C.37	0.000929
M	155	H155Y	Cat	Tat	8	8	Z.1	0.023121
M	155	H155H	caT	caC	7	7	AY.103	0.000043
M	155	H155H	caT	caC	7	7	AY.36	0.001037
M	155	H155L	cAt	cTt	7	7	AY.4	0.000011
M	155	H155N	Cat	Aat	7	7	AY.43	0.000031
M	155	H155H	caT	caC	7	7	B.1.2	0.000062
M	155	H155Y	Cat	Tat	7	7	B.1.221	0.000497
M	155	H155Y	Cat	Tat	7	7	B.1.564	0.002981
M	155	H155H	caT	caC	6	6	AY.120	0.000223
M	155	H155H	caT	caC	6	6	AY.14	0.000528
M	155	H155Y	Cat	Tat	6	6	B.1.1.291	0.004454
M	155	H155L	cAt	cTt	6	6	B.1.396	0.004234
M	155	H155H	caT	caC	6	6	P.1	0.000095
M	155	H155H	caT	caC	5	5	AY.117	0.000423
M	155	H155Y	Cat	Tat	5	5	AY.14	0.00044
M	155	H155L	cAt	cTt	5	5	AY.25	0.00003
M	155	H155Y	Cat	Tat	5	5	AY.27	0.000324
M	155	H155N	Cat	Aat	5	5	AY.3	0.00005
M	155	H155N	Cat	Aat	5	5	AY.4.2	0.000108
M	155	H155N	Cat	Aat	5	5	AY.44	0.00003
M	155	H155Y	Cat	Tat	5	5	AY.48	0.002326
M	155	H155N	Cat	Aat	5	5	B.1.1.519	0.000199
M	155	H155L	cAt	cTt	5	5	B.1.1.7	0.000004
M	155	H155H	caT	caC	5	5	B.1.177	0.000066
M	155	H155N	Cat	Aat	5	5	B.1.221	0.000355
M	155	H155Y	Cat	Tat	5	5	P.1.7	0.001596
M	155	H155Y	Cat	Tat	4	4	AD.2	0.000876
M	155	H155R	cAt	cGt	4	4	AY.117	0.000338
M	155	H155Y	Cat	Tat	4	4	AY.119	0.000141
M	155	H155H	caT	caC	4	4	AY.3	0.00004
M	155	H155H	caT	caC	4	4	AY.38	0.001997
M	155	H155Y	Cat	Tat	4	4	AY.4.2	0.000087
M	155	H155L	cAt	cTt	3	4	AY.44	0.000018
M	155	H155L	CAT	TTA	1	4	AY.44	0.000006
M	155	H155Y	Cat	Tat	4	4	AY.98	0.000316
M	155	H155R	cAt	cGt	4	4	B.1.1.7	0.000004
M	155	H155Q	caT	caG	3	4	B.1.1.7	0.000003
M	155	H155Q	caT	caA	1	4	B.1.1.7	0.000001
M	155	H155Y	Cat	Tat	4	4	B.1.177.81	0.000757
M	155	H155Y	Cat	Tat	4	4	B.1.218	0.020619
M	155	H155Y	Cat	Tat	4	4	B.1.36.29	0.002069
M	155	H155Y	Cat	Tat	4	4	B.1.564.1	0.006309
M	155	H155Y	Cat	Tat	4	4	B.1.575	0.001214
M	155	H155Y	Cat	Tat	4	4	B.1.577	0.002749
M	155	H155Y	Cat	Tat	4	4	B.1.637	0.000292
M	155	H155Y	Cat	Tat	4	4	B.1.9.5	0.022727
M	155	H155Y	Cat	Tat	4	4	C.35	0.003096
M	155	H155Y	Cat	Tat	3	3	A.1	0.000846
M	155	H155D	Cat	Gat	3	3	All	0.000001
M	155	H155del1	caT	ca-	2	3	All	0
M	155	H155del1	cAT	cG-	1	3	All	0
M	155	H155R	cAt	cGt	3	3	AY.100	0.000138
M	155	H155Q	caT	caG	2	3	AY.103	0.000012
M	155	H155Q	caT	caA	1	3	AY.103	0.000006
M	155	H155Y	Cat	Tat	3	3	AY.116.1	0.000934
M	155	H155Y	Cat	Tat	3	3	AY.117	0.000254
M	155	H155L	cAt	cTt	3	3	AY.119	0.000106
M	155	H155H	caT	caC	3	3	AY.26	0.000085
M	155	H155R	cAt	cGt	3	3	AY.37	0.000948
M	155	H155Y	Cat	Tat	3	3	AY.4.5	0.000322
M	155	H155Y	Cat	Tat	3	3	AY.42	0.000121
M	155	H155R	cAt	cGt	3	3	AY.43	0.000013
M	155	H155H	caT	caC	3	3	AY.45	0.000365
M	155	H155Y	Cat	Tat	3	3	AY.47	0.000093
M	155	H155Y	Cat	Tat	3	3	AY.70	0.000626
M	155	H155N	Cat	Aat	3	3	AY.9	0.000203
M	155	H155H	caT	caC	3	3	AY.9.1	0.000251
M	155	H155Y	Cat	Tat	3	3	AY.9.1	0.000251
M	155	H155Y	Cat	Tat	3	3	B.1.1.189	0.004539
M	155	H155Y	Cat	Tat	3	3	B.1.1.220	0.005576
M	155	H155Y	Cat	Tat	3	3	B.1.1.28	0.000934
M	155	H155Y	Cat	Tat	3	3	B.1.1.33	0.001263
M	155	H155H	caT	caC	3	3	B.1.1.413	0.02069
M	155	H155N	Cat	Aat	3	3	B.1.1.7	0.000003
M	155	H155Y	Cat	Tat	3	3	B.1.177.10	0.002634
M	155	H155Y	Cat	Tat	3	3	B.1.177.65	0.001996
M	155	H155Y	Cat	Tat	3	3	B.1.234	0.000396
M	155	H155Y	Cat	Tat	3	3	B.1.243	0.000209
M	155	H155H	caT	caC	3	3	B.1.351	0.000089
M	155	H155H	caT	caC	3	3	B.1.36.18	0.001261
M	155	H155Y	Cat	Tat	3	3	B.1.36.18	0.001261
M	155	H155H	caT	caC	3	3	B.1.369	0.000856
M	155	H155Y	Cat	Tat	3	3	B.1.509	0.002597
M	155	H155Y	Cat	Tat	3	3	B.1.524	0.004219
M	155	H155Y	Cat	Tat	3	3	B.1.621	0.000266
M	155	H155H	caT	caC	3	3	P.1.17	0.000485
M	155	H155Y	Cat	Tat	3	3	P.1.17	0.000485
M	155	H155R	cAt	cGt	3	3	P.2	0.00056
M	155	H155H	caT	caC	3	3	Q.8	0.000495
M	155	H155N	Cat	Aat	3	3	R.1	0.00027
M	155	H155Y	Cat	Tat	2	2	AY.100	0.000092
M	155	H155N	Cat	Aat	2	2	AY.102	0.000053
M	155	H155Y	Cat	Tat	2	2	AY.11	0.002677
M	155	H155R	cAt	cGt	2	2	AY.113	0.000285
M	155	H155L	cAt	cTt	2	2	AY.2	0.000712
M	155	H155N	Cat	Aat	2	2	AY.20	0.000078
M	155	H155R	cAt	cGt	2	2	AY.25	0.000012
M	155	H155R	cAt	cGt	2	2	AY.3	0.00002
M	155	H155Y	Cat	Tat	2	2	AY.33	0.000134
M	155	H155N	Cat	Aat	2	2	AY.39	0.000049
M	155	H155Y	Cat	Tat	2	2	AY.39.1	0.000079
M	155	H155H	caT	caC	2	2	AY.42	0.00008
M	155	H155H	caT	caC	2	2	AY.44	0.000012
M	155	H155Y	Cat	Tat	2	2	AY.46.5	0.000397
M	155	H155R	cAt	cGt	2	2	AY.47	0.000062
M	155	H155H	caT	caC	2	2	AY.5	0.000041
M	155	H155Y	Cat	Tat	2	2	AY.5.3	0.000675
M	155	H155Y	Cat	Tat	2	2	AY.54	0.000191
M	155	H155H	caT	caC	2	2	AY.61	0.00021
M	155	H155Y	Cat	Tat	2	2	AY.64	0.00119
M	155	H155H	caT	caC	2	2	AY.66	0.002139
M	155	H155R	cAt	cGt	2	2	AY.7	0.000392
M	155	H155Y	Cat	Tat	2	2	AY.75	0.000112
M	155	H155H	caT	caC	2	2	AY.79	0.002421
M	155	H155Y	Cat	Tat	2	2	AY.9	0.000135
M	155	H155H	caT	caC	2	2	AY.93	0.000546
M	155	H155Y	Cat	Tat	2	2	B	0.000256
M	155	H155N	Cat	Aat	2	2	B.1	0.000018
M	155	H155L	cAt	cTt	2	2	B.1	0.000018
M	155	H155N	Cat	Aat	2	2	B.1.1	0.000036
M	155	H155Y	Cat	Tat	2	2	B.1.1.161	0.007067
M	155	H155H	caT	caC	2	2	B.1.1.222	0.000408
M	155	H155Q	caT	caG	1	2	B.1.1.222	0.000204
M	155	H155Q	caT	caA	1	2	B.1.1.222	0.000204
M	155	H155H	caT	caC	2	2	B.1.1.25	0.001137
M	155	H155Y	Cat	Tat	2	2	B.1.1.306	0.000877
M	155	H155Y	Cat	Tat	2	2	B.1.1.317	0.000823
M	155	H155H	caT	caC	2	2	B.1.1.33	0.000842
M	155	H155Y	Cat	Tat	2	2	B.1.1.47	0.010695
M	155	H155Y	Cat	Tat	2	2	B.1.1.522	0.034483
M	155	H155N	Cat	Aat	2	2	B.1.1.63	0.000772
M	155	H155Y	Cat	Tat	2	2	B.1.1.70	0.000682
M	155	H155Y	Cat	Tat	2	2	B.1.177.77	0.001452
M	155	H155Y	Cat	Tat	2	2	B.1.177.82	0.000955
M	155	H155Y	Cat	Tat	2	2	B.1.177.86	0.000367
M	155	H155N	Cat	Aat	2	2	B.1.2	0.000018
M	155	H155Q	caT	caG	2	2	B.1.2	0.000018
M	155	H155H	caT	caC	2	2	B.1.265	0.002541
M	155	H155Y	Cat	Tat	2	2	B.1.351.1	0.076923
M	155	H155H	caT	caC	2	2	B.1.36.21	0.00432
M	155	H155H	caT	caC	2	2	B.1.362	0.003082
M	155	H155H	caT	caC	2	2	B.1.596	0.000174
M	155	H155Y	Cat	Tat	2	2	B.1.616	0.04878
M	155	H155Y	Cat	Tat	2	2	B.1.620	0.001892
M	155	H155Y	Cat	Tat	2	2	B.1.623	0.001073
M	155	H155Y	Cat	Tat	2	2	B.29	0.007018
M	155	H155H	caT	caC	2	2	C.37	0.000232
M	155	H155N	Cat	Aat	2	2	P.1	0.000032
M	155	H155Q	caT	caG	1	2	P.1.1	0.000318
M	155	H155Q	caT	caA	1	2	P.1.1	0.000318
M	155	H155Y	Cat	Tat	2	2	P.1.15	0.000465
M	155	H155Y	Cat	Tat	2	2	P.2	0.000373
M	155	H155H	caT	caC	2	2	P.2	0.000373
M	155	H155Y	Cat	Tat	2	2	Q.1	0.000253
M	155	H155H	caT	caC	2	2	Q.3	0.00029
M	155	H155Y	Cat	Tat	2	2	Q.7	0.002222
M	155	H155Y	Cat	Tat	2	2	R.1	0.00018
M	155	H155Y	Cat	Tat	1	1	A.2.5.2	0.001572
M	155	H155Y	Cat	Tat	1	1	A.23.1	0.000704
M	155	H155G	CAt	GGt	1	1	All	0
M	155	H155del2	CAt	--t	1	1	All	0
M	155	H155I	CAT	ATC	1	1	All	0
M	155	H155S	CAt	TCt	1	1	All	0
M	155	H155H	caT	caC	1	1	AY.1	0.000396
M	155	H155H	caT	caC	1	1	AY.100	0.000046
M	155	H155H	caT	caC	1	1	AY.102	0.000027
M	155	H155R	cAt	cGt	1	1	AY.102	0.000027
M	155	H155G	CAt	GGt	1	1	AY.103	0.000006
M	155	H155H	caT	caC	1	1	AY.104	0.001984
M	155	H155Q	caT	caA	1	1	AY.105	0.000643
M	155	H155L	cAt	cTt	1	1	AY.108	0.001103
M	155	H155H	caT	caC	1	1	AY.110	0.000113
M	155	H155Y	Cat	Tat	1	1	AY.113	0.000142
M	155	H155N	Cat	Aat	1	1	AY.116	0.000287
M	155	H155N	Cat	Aat	1	1	AY.116.1	0.000311
M	155	H155H	caT	caC	1	1	AY.118	0.000063
M	155	H155Y	Cat	Tat	1	1	AY.118	0.000063
M	155	H155H	caT	caC	1	1	AY.119	0.000035
M	155	H155N	Cat	Aat	1	1	AY.119	0.000035
M	155	H155Y	Cat	Tat	1	1	AY.12	0.000316
M	155	H155Y	Cat	Tat	1	1	AY.120.2.1	0.000498
M	155	H155H	caT	caC	1	1	AY.19	0.00114
M	155	H155Y	Cat	Tat	1	1	AY.2	0.000356
M	155	H155N	Cat	Aat	1	1	AY.21	0.001898
M	155	H155H	caT	caC	1	1	AY.23	0.00007
M	155	H155R	cAt	cGt	1	1	AY.23.1	0.000417
M	155	H155Q	caT	caG	1	1	AY.25	0.000006
M	155	H155D	Cat	Gat	1	1	AY.25	0.000006
M	155	H155N	Cat	Aat	1	1	AY.26	0.000028
M	155	H155del	CAT	---	1	1	AY.26	0.000028
M	155	H155H	caT	caC	1	1	AY.27	0.000065
M	155	H155Q	caT	caG	1	1	AY.27	0.000065
M	155	H155Q	caT	caG	1	1	AY.29	0.000016
M	155	H155R	cAt	cGt	1	1	AY.29.1	0.000221
M	155	H155Y	Cat	Tat	1	1	AY.29.1	0.000221
M	155	H155Y	Cat	Tat	1	1	AY.3.1	0.000085
M	155	H155H	caT	caC	1	1	AY.32	0.000532
M	155	H155H	caT	caC	1	1	AY.33	0.000067
M	155	H155H	caT	caC	1	1	AY.34	0.000097
M	155	H155N	Cat	Aat	1	1	AY.34.1	0.00051
M	155	H155H	caT	caC	1	1	AY.39	0.000025
M	155	H155R	cAt	cGt	1	1	AY.39.1	0.00004
M	155	H155P	cAt	cCt	1	1	AY.4	0.000002
M	155	H155Y	Cat	Tat	1	1	AY.4.1	0.000737
M	155	H155Y	Cat	Tat	1	1	AY.4.3	0.000842
M	155	H155D	Cat	Gat	1	1	AY.43	0.000004
M	155	H155del1	cAT	cG-	1	1	AY.44	0.000006
M	155	H155Y	Cat	Tat	1	1	AY.45	0.000122
M	155	H155N	Cat	Aat	1	1	AY.46	0.000104
M	155	H155H	caT	caC	1	1	AY.46	0.000104
M	155	H155N	Cat	Aat	1	1	AY.46.4	0.000165
M	155	H155Y	Cat	Tat	1	1	AY.46.4	0.000165
M	155	H155R	cAt	cGt	1	1	AY.46.4	0.000165
M	155	H155Y	Cat	Tat	1	1	AY.46.6	0.000072
M	155	H155N	Cat	Aat	1	1	AY.46.6	0.000072
M	155	H155N	Cat	Aat	1	1	AY.47	0.000031
M	155	H155H	caT	caC	1	1	AY.47	0.000031
M	155	H155N	Cat	Aat	1	1	AY.5	0.000021
M	155	H155Y	Cat	Tat	1	1	AY.5.4	0.000277
M	155	H155R	cAt	cGt	1	1	AY.5.4	0.000277
M	155	H155N	Cat	Aat	1	1	AY.52	0.000814
M	155	H155N	Cat	Aat	1	1	AY.54	0.000095
M	155	H155Y	Cat	Tat	1	1	AY.55	0.000917
M	155	H155Y	Cat	Tat	1	1	AY.56	0.001605
M	155	H155H	caT	caC	1	1	AY.6	0.000041
M	155	H155Y	Cat	Tat	1	1	AY.61	0.000105
M	155	H155Y	Cat	Tat	1	1	AY.62	0.000436
M	155	H155Y	Cat	Tat	1	1	AY.68	0.000274
M	155	H155R	cAt	cGt	1	1	AY.69	0.000187
M	155	H155Y	Cat	Tat	1	1	AY.7	0.000196
M	155	H155R	cAt	cGt	1	1	AY.7.1	0.000113
M	155	H155H	caT	caC	1	1	AY.74	0.000116
M	155	H155Y	Cat	Tat	1	1	AY.75.1	0.00018
M	155	H155Y	Cat	Tat	1	1	AY.79	0.001211
M	155	H155Y	Cat	Tat	1	1	AY.80	0.001129
M	155	H155H	caT	caC	1	1	AY.84	0.000437
M	155	H155S	CAt	TCt	1	1	AY.85	0.000427
M	155	H155L	cAt	cTt	1	1	AY.88	0.000884
M	155	H155N	Cat	Aat	1	1	AY.9.2	0.000037
M	155	H155H	caT	caC	1	1	AY.91	0.00073
M	155	H155Y	Cat	Tat	1	1	AY.92	0.000287
M	155	H155H	caT	caC	1	1	AY.98	0.000079
M	155	H155N	Cat	Aat	1	1	AY.98	0.000079
M	155	H155R	cAt	cGt	1	1	AY.99.2	0.000092
M	155	H155N	Cat	Aat	1	1	B	0.000128
M	155	H155del	CAT	---	1	1	B.1	0.000009
M	155	H155Q	caT	caG	1	1	B.1	0.000009
M	155	H155D	Cat	Gat	1	1	B.1.1	0.000018
M	155	H155H	caT	caC	1	1	B.1.1	0.000018
M	155	H155L	cAt	cTt	1	1	B.1.1	0.000018
M	155	H155Y	Cat	Tat	1	1	B.1.1.10	0.001115
M	155	H155Y	Cat	Tat	1	1	B.1.1.110	0.090909
M	155	H155Y	Cat	Tat	1	1	B.1.1.153	0.001095
M	155	H155Y	Cat	Tat	1	1	B.1.1.176	0.000439
M	155	H155P	cAt	cCt	1	1	B.1.1.194	0.00495
M	155	H155Y	Cat	Tat	1	1	B.1.1.205	0.003717
M	155	H155H	caT	caC	1	1	B.1.1.214	0.000055
M	155	H155del	CAT	---	1	1	B.1.1.221	0.010101
M	155	H155Y	Cat	Tat	1	1	B.1.1.222	0.000204
M	155	H155N	Cat	Aat	1	1	B.1.1.25	0.000569
M	155	H155Y	Cat	Tat	1	1	B.1.1.26	0.005236
M	155	H155H	caT	caC	1	1	B.1.1.277	0.000759
M	155	H155Y	Cat	Tat	1	1	B.1.1.294	0.001266
M	155	H155Y	Cat	Tat	1	1	B.1.1.311	0.000358
M	155	H155Y	Cat	Tat	1	1	B.1.1.322	0.008772
M	155	H155Y	Cat	Tat	1	1	B.1.1.334	0.016393
M	155	H155Y	Cat	Tat	1	1	B.1.1.348	0.000796
M	155	H155Y	Cat	Tat	1	1	B.1.1.354	0.004386
M	155	H155Q	caT	caG	1	1	B.1.1.407	0.041667
M	155	H155Y	Cat	Tat	1	1	B.1.1.409	0.002833
M	155	H155Y	Cat	Tat	1	1	B.1.1.416	0.000905
M	155	H155Y	Cat	Tat	1	1	B.1.1.420	0.001006
M	155	H155del	CAT	---	1	1	B.1.1.420	0.001006
M	155	H155H	caT	caC	1	1	B.1.1.432	0.001266
M	155	H155Y	Cat	Tat	1	1	B.1.1.433	0.001425
M	155	H155Y	Cat	Tat	1	1	B.1.1.448	0.002033
M	155	H155Y	Cat	Tat	1	1	B.1.1.523	0.001563
M	155	H155Y	Cat	Tat	1	1	B.1.110.3	0.000718
M	155	H155H	caT	caC	1	1	B.1.111	0.001175
M	155	H155Y	Cat	Tat	1	1	B.1.124	0.007812
M	155	H155Y	Cat	Tat	1	1	B.1.149	0.003425
M	155	H155H	caT	caC	1	1	B.1.160	0.000031
M	155	H155R	cAt	cGt	1	1	B.1.160	0.000031
M	155	H155N	Cat	Aat	1	1	B.1.160.17	0.001701
M	155	H155Y	Cat	Tat	1	1	B.1.170	0.00431
M	155	H155H	caT	caC	1	1	B.1.177.15	0.000631
M	155	H155Y	Cat	Tat	1	1	B.1.177.21	0.000076
M	155	H155del2	CAt	--t	1	1	B.1.177.21	0.000076
M	155	H155Y	Cat	Tat	1	1	B.1.177.39	0.015385
M	155	H155Y	Cat	Tat	1	1	B.1.177.4	0.000211
M	155	H155Q	caT	caG	1	1	B.1.177.4	0.000211
M	155	H155Y	Cat	Tat	1	1	B.1.177.57	0.000281
M	155	H155N	Cat	Aat	1	1	B.1.177.62	0.001192
M	155	H155Y	Cat	Tat	1	1	B.1.177.7	0.000165
M	155	H155Y	Cat	Tat	1	1	B.1.177.8	0.000752
M	155	H155H	caT	caC	1	1	B.1.177.81	0.000189
M	155	H155Y	Cat	Tat	1	1	B.1.177.87	0.000728
M	155	H155Y	Cat	Tat	1	1	B.1.195	0.005025
M	155	H155del1	caT	ca-	1	1	B.1.2	0.000009
M	155	H155L	cAt	cTt	1	1	B.1.2	0.000009
M	155	H155R	cAt	cGt	1	1	B.1.2	0.000009
M	155	H155Q	caT	caA	1	1	B.1.206	0.000816
M	155	H155H	caT	caC	1	1	B.1.221	0.000071
M	155	H155H	caT	caC	1	1	B.1.234	0.000132
M	155	H155H	caT	caC	1	1	B.1.243	0.00007
M	155	H155H	caT	caC	1	1	B.1.251	0.021739
M	155	H155Q	caT	caG	1	1	B.1.258.11	0.000396
M	155	H155del	CAT	---	1	1	B.1.258.11	0.000396
M	155	H155Y	Cat	Tat	1	1	B.1.258.14	0.00098
M	155	H155Y	Cat	Tat	1	1	B.1.258.21	0.007752
M	155	H155Y	Cat	Tat	1	1	B.1.258.22	0.002667
M	155	H155H	caT	caC	1	1	B.1.277	0.02381
M	155	H155Y	Cat	Tat	1	1	B.1.305	0.002151
M	155	H155Y	Cat	Tat	1	1	B.1.336	0.002439
M	155	H155L	cAt	cTt	1	1	B.1.351.2	0.000303
M	155	H155Y	Cat	Tat	1	1	B.1.351.2	0.000303
M	155	H155H	caT	caC	1	1	B.1.351.2	0.000303
M	155	H155Y	Cat	Tat	1	1	B.1.351.5	0.0006
M	155	H155del1	caT	ca-	1	1	B.1.36	0.000146
M	155	H155H	caT	caC	1	1	B.1.36	0.000146
M	155	H155Y	Cat	Tat	1	1	B.1.36	0.000146
M	155	H155N	Cat	Aat	1	1	B.1.36	0.000146
M	155	H155Y	Cat	Tat	1	1	B.1.36.1	0.00114
M	155	H155Y	Cat	Tat	1	1	B.1.36.17	0.000494
M	155	H155Q	caT	caG	1	1	B.1.36.22	0.001208
M	155	H155Y	Cat	Tat	1	1	B.1.36.26	0.002857
M	155	H155H	caT	caC	1	1	B.1.36.7	0.004
M	155	H155Y	Cat	Tat	1	1	B.1.391	0.001127
M	155	H155Y	Cat	Tat	1	1	B.1.393	0.028571
M	155	H155N	Cat	Aat	1	1	B.1.427	0.00005
M	155	H155del	CAT	---	1	1	B.1.427	0.00005
M	155	H155H	caT	caC	1	1	B.1.456	0.003268
M	155	H155H	caT	caC	1	1	B.1.470	0.001404
M	155	H155H	caT	caC	1	1	B.1.517	0.000427
M	155	H155Y	Cat	Tat	1	1	B.1.525	0.000113
M	155	H155P	cAt	cCt	1	1	B.1.525	0.000113
M	155	H155R	cAt	cGt	1	1	B.1.526	0.000024
M	155	H155Y	Cat	Tat	1	1	B.1.561	0.000397
M	155	H155Y	Cat	Tat	1	1	B.1.563	0.016949
M	155	H155H	caT	caC	1	1	B.1.568	0.001111
M	155	H155Y	Cat	Tat	1	1	B.1.576	0.000907
M	155	H155Y	Cat	Tat	1	1	B.1.580	0.004065
M	155	H155Y	Cat	Tat	1	1	B.1.588	0.00091
M	155	H155Q	caT	caG	1	1	B.1.596	0.000087
M	155	H155Y	Cat	Tat	1	1	B.1.617.1	0.000129
M	155	H155L	cAt	cTt	1	1	B.1.617.2	0.000004
M	155	H155I	CAT	ATC	1	1	B.1.617.2	0.000004
M	155	H155del	CAT	---	1	1	B.1.617.2	0.000004
M	155	H155H	caT	caC	1	1	B.1.621	0.000089
M	155	H155L	cAt	cTt	1	1	B.27	0.015385
M	155	H155Y	Cat	Tat	1	1	B.3.1	0.001658
M	155	H155L	cAt	cTt	1	1	B.40	0.000364
M	155	H155Y	Cat	Tat	1	1	B.40	0.000364
M	155	H155N	Cat	Aat	1	1	B.40	0.000364
M	155	H155Y	Cat	Tat	1	1	B.52	0.010101
M	155	H155Y	Cat	Tat	1	1	C.1.2	0.004255
M	155	H155Y	Cat	Tat	1	1	C.16	0.00106
M	155	H155N	Cat	Aat	1	1	C.35	0.000774
M	155	H155Y	Cat	Tat	1	1	N.5	0.001767
M	155	H155N	Cat	Aat	1	1	P.1.14	0.000048
M	155	H155Y	Cat	Tat	1	1	P.1.14	0.000048
M	155	H155H	caT	caC	1	1	P.1.15	0.000232
M	155	H155Y	Cat	Tat	1	1	P.1.17.1	0.000875
M	155	H155Y	Cat	Tat	1	1	Q.4	0.000455
M	155	H155Y	Cat	Tat	1	1	Q.8	0.000165
M	155	H155H	caT	caC	1	1	R.1	0.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.