CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = M : CodonNum = 154

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
M154H154HsyncaCcaT721721126982-26984
M154H154deldelCAC---134134126982-26984
M154H154YnonsynCacTac4242126982-26984
M154H154QnonsyncaCcaA27260.96296326982-26984
M154H154QnonsyncaCcaG2710.03703726982-26984
M154H154RnonsyncAccGc540.826982-26984
M154H154LnonsyncAccTc530.626982-26984
M154H154LnonsyncACcTT520.426982-26984
M154H154RnonsyncACcGA510.226982-26984
M154H154PnonsyncAccCc44126982-26984
M154H154NnonsynCacAac44126982-26984
M154H154del1delcaCca-430.7526982-26984
M154H154del1delCac-ac410.2526982-26984
M154H154InonsynCAcATc11126982-26984
M154H154TnonsynCAcACc11126982-26984
M154H154DnonsynCacGac11126982-26984
M154H154EnonsynCaCGaA11126982-26984
M154H154SnonsynCAcAGc11126982-26984

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
M154H154HcaCcaT721721All0.000138
M154H154HcaCcaT214214AY.40.000333
M154H154HcaCcaT135135AY.1060.045211
M154H154delCAC---134134All0.000026
M154H154delCAC---114114B.1.177.210.008718
M154H154HcaCcaT9797B.1.1.70.000087
M154H154HcaCcaT5050AY.30.000497
M154H154YCacTac4242All0.000008
M154H154HcaCcaT3434B.1.1.1360.723404
M154H154QcaCcaA2627All0.000005
M154H154QcaCcaG127All0
M154H154HcaCcaT2222B.1.20.000194
M154H154HcaCcaT1919AY.1030.000118
M154H154HcaCcaT1515AY.430.000066
M154H154HcaCcaT1414AY.440.000085
M154H154HcaCcaT1313AY.260.000368
M154H154YCacTac1212AY.40.000019
M154H154delCAC---1212B.1.1.70.000011
M154H154HcaCcaT1212B.1.2580.000799
M154H154QcaCcaA1010B.1.1.70.000009
M154H154HcaCcaT1010B.1.617.20.000038
M154H154QcaCcaA99AY.440.000055
M154H154HcaCcaT77AY.250.000042
M154H154HcaCcaT77AY.460.000729
M154H154HcaCcaT66B.1.3510.000178
M154H154RcAccGc45All0.000001
M154H154LcAccTc35All0.000001
M154H154LcACcTT25All0
M154H154RcACcGA15All0
M154H154HcaCcaT55B.1.4290.000118
M154H154NCacAac44All0.000001
M154H154PcAccCc44All0.000001
M154H154del1caCca-34All0.000001
M154H154del1Cac-ac14All0
M154H154HcaCcaT44B.10.000037
M154H154YCacTac44B.1.1.70.000004
M154H154HcaCcaT44B.1.5260.000094
M154H154HcaCcaT44N.50.007067
M154H154YCacTac33AY.250.000018
M154H154YCacTac33AY.260.000085
M154H154HcaCcaT33AY.390.000074
M154H154HcaCcaT33AY.420.000121
M154H154HcaCcaT33B.1.1790.011278
M154H154YCacTac33B.1.3510.000089
M154H154QcaCcaA23B.1.617.20.000008
M154H154QcaCcaG13B.1.617.20.000004
M154H154HcaCcaT22AY.200.000078
M154H154HcaCcaT22AY.290.000032
M154H154QcaCcaA22AY.30.00002
M154H154YCacTac22AY.4.2.10.000298
M154H154HcaCcaT22AY.450.000243
M154H154HcaCcaT22B0.000256
M154H154HcaCcaT22B.1.5030.004975
M154H154YCacTac22B.1.617.20.000008
M154H154HcaCcaT22P.10.000032
M154H154HcaCcaT22P.1.150.000465
M154H154NCacAac110.055556
M154H154LcAccTc110.055556
M154H154ICAcATc110.055556
M154H154LcAccTc11A.2.40.003367
M154H154DCacGac11All0
M154H154ICAcATc11All0
M154H154SCAcAGc11All0
M154H154TCAcACc11All0
M154H154ECaCGaA11All0
M154H154SCAcAGc11AY.1030.000006
M154H154YCacTac11AY.1170.000085
M154H154HcaCcaT11AY.1200.000037
M154H154NCacAac11AY.200.000039
M154H154delCAC---11AY.260.000028
M154H154YCacTac11AY.270.000065
M154H154QcaCcaA11AY.290.000016
M154H154PcAccCc11AY.330.000067
M154H154HcaCcaT11AY.350.000233
M154H154YCacTac11AY.390.000025
M154H154RcAccGc11AY.40.000002
M154H154HcaCcaT11AY.4.20.000022
M154H154RcAccGc11AY.4.20.000022
M154H154HcaCcaT11AY.400.000964
M154H154DCacGac11AY.430.000004
M154H154LcACcTT11AY.440.000006
M154H154delCAC---11AY.440.000006
M154H154YCacTac11AY.440.000006
M154H154del1caCca-11AY.440.000006
M154H154QcaCcaA11AY.50.000021
M154H154HcaCcaT11AY.50.000021
M154H154YCacTac11AY.520.000814
M154H154HcaCcaT11AY.590.00053
M154H154HcaCcaT11AY.60.000041
M154H154HcaCcaT11AY.620.000436
M154H154HcaCcaT11AY.7.10.000113
M154H154HcaCcaT11AY.850.000427
M154H154RcACcGA11AY.850.000427
M154H154HcaCcaT11AY.9.20.000037
M154H154HcaCcaT11AY.98.10.000048
M154H154del1Cac-ac11B.10.000009
M154H154delCAC---11B.10.000009
M154H154YCacTac11B.1.10.000018
M154H154HcaCcaT11B.1.10.000018
M154H154HcaCcaT11B.1.1.1610.003534
M154H154delCAC---11B.1.1.2210.010101
M154H154HcaCcaT11B.1.1.3220.008772
M154H154delCAC---11B.1.1.4200.001006
M154H154NCacAac11B.1.1.70.000001
M154H154NCacAac11B.1.1.700.000341
M154H154TCAcACc11B.1.1.700.000341
M154H154PcAccCc11B.1.1.700.000341
M154H154del1caCca-11B.1.177.210.000076
M154H154HcaCcaT11B.1.177.40.000211
M154H154HcaCcaT11B.1.177.50.001242
M154H154HcaCcaT11B.1.177.810.000189
M154H154LcAccTc11B.1.2210.000071
M154H154PcAccCc11B.1.2210.000071
M154H154HcaCcaT11B.1.2400.000216
M154H154delCAC---11B.1.258.110.000396
M154H154HcaCcaT11B.1.258.170.000104
M154H154YCacTac11B.1.258.170.000104
M154H154HcaCcaT11B.1.3110.000275
M154H154RcAccGc11B.1.3620.001541
M154H154HcaCcaT11B.1.3710.001122
M154H154delCAC---11B.1.4270.00005
M154H154YCacTac11B.1.4320.011236
M154H154HcaCcaT11B.1.466.20.000391
M154H154HcaCcaT11B.1.5950.000261
M154H154QcaCcaA11B.1.5960.000087
M154H154LcACcTT11B.1.5960.000087
M154H154YCacTac11B.1.617.10.000129
M154H154HcaCcaT11B.1.617.10.000129
M154H154delCAC---11B.1.617.20.000004
M154H154RcAccGc11B.1.617.20.000004
M154H154del1caCca-11B.1.617.20.000004
M154H154ECaCGaA11B.1.617.20.000004
M154H154HcaCcaT11B.1.6210.000089
M154H154YCacTac11B.1.90.006173
M154H154PcAccCc11B.3.10.001658
M154H154YCacTac11D.20.000075
M154H154YCacTac11P.10.000016
M154H154YCacTac11P.1.10.000318