CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = M : CodonNum = 150

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
M150R150RsyncgTcgC25715257040.99957226970-26972
M150R150RsyncgTcgG25715100.00038887826970-26972
M150R150RsyncgTcgA2571510.000038887826970-26972
M150R150deldelCGT---125125126970-26972
M150R150CnonsynCgtTgt1180.72727326970-26972
M150R150CnonsynCgTTgC1130.27272726970-26972
M150R150LnonsyncGtcTt1010126970-26972
M150R150SnonsynCgtAgt640.66666726970-26972
M150R150SnonsynCgTAgC620.33333326970-26972
M150R150del1delCgt-gt310.33333326970-26972
M150R150del1delcGtc-t310.33333326970-26972
M150R150del1delcgTcg-310.33333326970-26972
M150R150PnonsyncGtcCt22126970-26972
M150R150HnonsyncGtcAt22126970-26972
M150R150del2delCGt--t210.526970-26972
M150R150del2delCGT--G210.526970-26972
M150R150QnonsyncGTcAG11126970-26972

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
M150R150RcgTcgC2570425715All0.004916
M150R150RcgTcgG1025715All0.000002
M150R150RcgTcgA125715All0
M150R150RcgTcgC1032410324B.1.2580.68703
M150R150RcgTcgC94139413B.1.258.170.978686
M150R150RcgTcgC24832483B.1.258.110.984146
M150R150RcgTcgC523523B.1.258.71
M150R150RcgTcgC372372B.1.258.220.992
M150R150RcgTcgC290290B.1.258.41
M150R150RcgTcgC255255B.10.002336
M150R150RcgTcgC198198B.1.258.90.99
M150R150RcgTcgC141141B.1.1.70.000126
M150R150RcgTcgC141141B.1.258.191
M150R150delCGT---125125All0.000024
M150R150RcgTcgC125125B.1.258.120.984252
M150R150RcgTcgC125125B.1.258.210.968992
M150R150RcgTcgC114114B.1.258.51
M150R150RcgTcgC113113B.1.617.20.000425
M150R150delCGT---102102B.1.177.210.0078
M150R150RcgTcgC9599AY.40.000148
M150R150RcgTcgG499AY.40.000006
M150R150RcgTcgC8787B.1.258.100.988636
M150R150RcgTcgC6363B.1.258.201
M150R150RcgTcgC5761AY.30.000567
M150R150RcgTcgG461AY.30.00004
M150R150RcgTcgC5353AY.440.000323
M150R150RcgTcgC5151B.1.258.61
M150R150RcgTcgC4444B.1.6210.003895
M150R150RcgTcgC4141B.1.258.230.97619
M150R150RcgTcgC3737B.1.20.000326
M150R150RcgTcgC3535B.1.1770.000461
M150R150RcgTcgC3535B.1.2210.002486
M150R150RcgTcgC3131B.1.258.240.333333
M150R150RcgTcgC3030B.1.10.000544
M150R150RcgTcgC3030B.1.1600.000936
M150R150RcgTcgC2929AY.1030.00018
M150R150RcgTcgC2828B.1.6090.013423
M150R150RcgTcgC2626AY.360.003854
M150R150RcgTcgC1414B.1.3670.011094
M150R150RcgTcgC1313B0.001662
M150R150delCGT---1313B.1.1.70.000012
M150R150RcgTcgC1313B.1.258.140.012745
M150R150RcgTcgC1313B.1.4180.206349
M150R150RcgTcgC1212AY.250.000072
M150R150RcgTcgC1212AY.390.000297
M150R150RcgTcgC1212AY.430.000053
M150R150CCgtTgt811All0.000002
M150R150CCgTTgC311All0.000001
M150R150LcGtcTt1010All0.000002
M150R150RcgTcgC1010B.1.258.181
M150R150RcgTcgC99B.1.2340.001187
M150R150RcgTcgC88A0.003096
M150R150RcgTcgC88AY.7.10.000902
M150R150RcgTcgC77AY.4.20.000152
M150R150RcgTcgC77B.1.1.5190.000278
M150R150RcgTcgC77B.1.2220.011844
M150R150RcgTcgC77B.4.10.132075
M150R150SCgtAgt46All0.000001
M150R150SCgTAgC26All0
M150R150RcgTcgC66AY.1000.000276
M150R150RcgTcgC66AY.910.004383
M150R150RcgTcgC66B.1.3750.004918
M150R150RcgTcgC55A.30.010482
M150R150RcgTcgC55AY.470.000156
M150R150RcgTcgC55B.1.4110.018519
M150R150RcgTcgC55B.1.6000.02924
M150R150RcgTcgC55P.10.000079
M150R150RcgTcgC44AY.46.60.000289
M150R150RcgTcgC44B.1.5250.000453
M150R150RcgTcgC44R.10.00036
M150R150del1Cgt-gt13All0
M150R150del1cgTcg-13All0
M150R150del1cGtc-t13All0
M150R150RcgTcgC33AY.770.003382
M150R150RcgTcgC33AY.98.10.000145
M150R150LcGtcTt33B.10.000027
M150R150RcgTcgC33B.1.160.80.003866
M150R150CCgTTgC33B.1.177.210.000229
M150R150RcgTcgC23B.1.177.730.001133
M150R150RcgTcgA13B.1.177.730.000566
M150R150RcgTcgC33B.1.258.150.056604
M150R150RcgTcgC33B.1.4290.000071
M150R150RcgTcgC33Q.30.000435
M150R150HcGtcAt22All0
M150R150PcGtcCt22All0
M150R150del2CGT--G12All0
M150R150del2CGt--t12All0
M150R150RcgTcgC22AY.1020.000053
M150R150RcgTcgC22AY.1190.000071
M150R150RcgTcgC22AY.3.10.000171
M150R150RcgTcgC22AY.400.001929
M150R150RcgTcgC22AY.590.001059
M150R150RcgTcgC22AY.75.10.000361
M150R150CCgtTgt22B.10.000018
M150R150SCgtAgt12B.10.000009
M150R150SCgTAgC12B.10.000009
M150R150RcgTcgC22B.1.1.1530.002191
M150R150RcgTcgC22B.1.1.2140.000111
M150R150LcGtcTt22B.1.1.70.000002
M150R150RcgTcgC22B.1.1.700.000682
M150R150RcgTcgC22B.1.160.70.004158
M150R150RcgTcgC22B.1.177.310.022989
M150R150RcgTcgC22B.1.177.60.001953
M150R150RcgTcgC22B.1.177.70.00033
M150R150RcgTcgC22B.1.2370.00995
M150R150RcgTcgC22B.1.3510.000059
M150R150RcgTcgC22B.1.360.000292
M150R150RcgTcgG22B.1.36.10.002281
M150R150RcgTcgC22B.1.466.20.000782
M150R150RcgTcgC22B.1.5760.001813
M150R150RcgTcgC22B.1.5900.009091
M150R150RcgTcgC110.055556
M150R150RcgTcgC11A.2.40.003367
M150R150RcgTcgC11A.2.50.000499
M150R150QcGTcAG11All0
M150R150del2CGT--G11AY.1030.000006
M150R150RcgTcgC11AY.110.001339
M150R150RcgTcgC11AY.16.10.00047
M150R150RcgTcgC11AY.200.000039
M150R150RcgTcgC11AY.230.00007
M150R150del2CGt--t11AY.250.000006
M150R150delCGT---11AY.260.000028
M150R150LcGtcTt11AY.270.000065
M150R150LcGtcTt11AY.40.000002
M150R150SCgTAgC11AY.420.00004
M150R150RcgTcgC11AY.420.00004
M150R150delCGT---11AY.430.000004
M150R150delCGT---11AY.440.000006
M150R150RcgTcgC11AY.450.000122
M150R150RcgTcgC11AY.46.40.000165
M150R150PcGtcCt11AY.470.000031
M150R150RcgTcgC11AY.520.000814
M150R150RcgTcgC11AY.610.000105
M150R150CCgtTgt11AY.610.000105
M150R150RcgTcgC11AY.620.000436
M150R150SCgtAgt11AY.7.10.000113
M150R150QcGTcAG11AY.850.000427
M150R150RcgTcgC11AY.90.000068
M150R150RcgTcgC11AY.980.000079
M150R150RcgTcgC11AY.99.20.000092
M150R150HcGtcAt11B.10.000009
M150R150delCGT---11B.10.000009
M150R150HcGtcAt11B.1.10.000018
M150R150CCgtTgt11B.1.10.000018
M150R150delCGT---11B.1.1.2210.010101
M150R150RcgTcgC11B.1.1.2250.007194
M150R150RcgTcgC11B.1.1.2840.000107
M150R150RcgTcgC11B.1.1.3170.000412
M150R150RcgTcgC11B.1.1.390.00051
M150R150RcgTcgC11B.1.1.4090.002833
M150R150delCGT---11B.1.1.4200.001006
M150R150RcgTcgC11B.1.1.4660.008696
M150R150RcgTcgC11B.1.1.500.000679
M150R150RcgTcgC11B.1.1460.004237
M150R150RcgTcgC11B.1.1490.003425
M150R150RcgTcgC11B.1.1570.002985
M150R150LcGtcTt11B.1.1770.000013
M150R150RcgTcgC11B.1.177.120.000152
M150R150del1Cgt-gt11B.1.177.350.000691
M150R150CCgtTgt11B.1.177.520.001757
M150R150RcgTcgC11B.1.177.800.001912
M150R150CCgtTgt11B.1.177.860.000183
M150R150RcgTcgC11B.1.177.860.000183
M150R150SCgtAgt11B.1.20.000009
M150R150RcgTcgC11B.1.2230.002778
M150R150LcGtcTt11B.1.2320.000537
M150R150CCgtTgt11B.1.2340.000132
M150R150RcgTcgC11B.1.2420.018868
M150R150delCGT---11B.1.258.110.000396
M150R150RcgTcgC11B.1.258.160.001637
M150R150RcgTcgC11B.1.258.30.001675
M150R150RcgTcgC11B.1.2930.0125
M150R150RcgTcgC11B.1.3290.000608
M150R150delCGT---11B.1.3510.00003
M150R150RcgTcgC11B.1.36.170.000494
M150R150RcgTcgC11B.1.36.310.001751
M150R150RcgTcgC11B.1.36.90.003215
M150R150RcgTcgC11B.1.3620.001541
M150R150RcgTcgC11B.1.3660.004878
M150R150RcgTcgC11B.1.4060.006061
M150R150delCGT---11B.1.4270.00005
M150R150PcGtcCt11B.1.4290.000024
M150R150RcgTcgC11B.1.4320.011236
M150R150RcgTcgC11B.1.5240.001406
M150R150RcgTcgC11B.1.5260.000024
M150R150RcgTcgC11B.1.5960.000087
M150R150del1cgTcg-11B.1.5960.000087
M150R150RcgTcgC11B.1.5990.00365
M150R150delCGT---11B.1.617.20.000004
M150R150del1cGtc-t11B.1.617.20.000004
M150R150LcGtcTt11B.1.617.20.000004
M150R150RcgTcgC11B.1.6230.000536
M150R150RcgTcgC11B.1.6270.00202
M150R150RcgTcgC11B.1.6370.000073
M150R150RcgTcgC11B.1.940.027027
M150R150CCgtTgt11Q.10.000126
M150R150SCgtAgt11Q.10.000126