CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = M : CodonNum = 148

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
M148H148HsyncaTcaC31803180126964-26966
M148H148YnonsynCatTat7267240.99724526964-26966
M148H148YnonsynCaTTaC72620.0027548226964-26966
M148H148QnonsyncaTcaA2841590.55985926964-26966
M148H148QnonsyncaTcaG2841250.44014126964-26966
M148H148RnonsyncAtcGt166166126964-26966
M148H148deldelCAT---125125126964-26966
M148H148NnonsynCatAat2222126964-26966
M148H148LnonsyncAtcTt1717126964-26966
M148H148DnonsynCatGat760.85714326964-26966
M148H148DnonsynCaTGaC710.14285726964-26966
M148H148del1delCaT-aC630.526964-26966
M148H148del1delcaTca-620.33333326964-26966
M148H148del1delCat-at610.16666726964-26966
M148H148EnonsynCaTGaA22126964-26966
M148H148KnonsynCaTAaG11126964-26966
M148H148PnonsyncAtcCt11126964-26966
M148H148GnonsynCAtGGt11126964-26966

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
M148H148HcaTcaC31803180All0.000608
M148H148HcaTcaC14191419B.1.177.350.98065
M148H148HcaTcaC11171117B.1.177.420.999106
M148H148YCatTat724726All0.000138
M148H148YCaTTaC2726All0
M148H148QcaTcaA159284All0.00003
M148H148QcaTcaG125284All0.000024
M148H148RcAtcGt166166All0.000032
M148H148QcaTcaA149150B.1.10.002703
M148H148QcaTcaG1150B.1.10.000018
M148H148YCatTat128128AY.1030.000795
M148H148delCAT---125125All0.000024
M148H148HcaTcaC120120B.1.1.70.000107
M148H148delCAT---102102B.1.177.210.0078
M148H148HcaTcaC9292B.1.1.5190.003653
M148H148YCatTat8585B.1.1.70.000076
M148H148QcaTcaG7880B.10.000714
M148H148QcaTcaA280B.10.000018
M148H148YCatTat8080B.1.3510.002378
M148H148YCatTat5757AY.40.000089
M148H148HcaTcaC5151AY.40.000079
M148H148RcAtcGt4444AY.440.000268
M148H148YCatTat4242AY.430.000186
M148H148HcaTcaC3232B.1.617.20.00012
M148H148YCatTat2929AY.420.001167
M148H148YCatTat2929P.10.000457
M148H148HcaTcaC2424AY.250.000144
M148H148HcaTcaC2323AY.30.000229
M148H148YCatTat2323B.1.1600.000717
M148H148NCatAat2222All0.000004
M148H148YCatTat2222AY.39.10.000871
M148H148YCatTat2222B.1.20.000194
M148H148YCatTat2121AY.250.000126
M148H148HcaTcaC2020B.1.438.10.002145
M148H148LcAtcTt1717All0.000003
M148H148YCatTat1717B.1.617.20.000064
M148H148RcAtcGt1616AY.40.000025
M148H148HcaTcaC1616B.1.2270.761905
M148H148HcaTcaC1515AY.1030.000093
M148H148HcaTcaC1515AY.440.000091
M148H148YCatTat1515B.1.466.20.005869
M148H148RcAtcGt1414B.1.617.20.000053
M148H148HcaTcaC1313AQ.10.928571
M148H148delCAT---1313B.1.1.70.000012
M148H148RcAtcGt1313B.1.1.70.000012
M148H148HcaTcaC1313P.10.000205
M148H148HcaTcaC1212B.1.1770.000158
M148H148HcaTcaC1212B.1.20.000106
M148H148HcaTcaC1111B.1.1600.000343
M148H148HcaTcaC1111B.1.160.320.04721
M148H148HcaTcaC1111B.1.177.560.007343
M148H148YCatTat1111B.1.36.180.004622
M148H148YCatTat1010B.1.1.5190.000397
M148H148YCatTat99B.1.1110.010576
M148H148QcaTcaG88AY.30.00008
M148H148HcaTcaC88AY.430.000035
M148H148HcaTcaC88AY.470.000249
M148H148YCatTat88B.10.000073
M148H148HcaTcaC88B.10.000073
M148H148YCatTat88B.1.1.1700.009975
M148H148DCatGat67All0.000001
M148H148DCaTGaC17All0
M148H148HcaTcaC77B.1.1.390.003568
M148H148RcAtcGt77B.1.1770.000092
M148H148QcaTcaG77B.1.20.000062
M148H148HcaTcaC77B.1.3960.00494
M148H148del1CaT-aC36All0.000001
M148H148del1caTca-26All0
M148H148del1Cat-at16All0
M148H148HcaTcaC66AY.1020.000159
M148H148HcaTcaC66AY.200.000233
M148H148DCatGat56B.1.1.70.000004
M148H148QcaTcaG46B.1.1.70.000004
M148H148QcaTcaA26B.1.1.70.000002
M148H148DCaTGaC16B.1.1.70.000001
M148H148NCatAat55AY.250.00003
M148H148QcaTcaG55AY.250.00003
M148H148NCatAat55AY.40.000008
M148H148RcAtcGt55AY.430.000022
M148H148YCatTat55B.1.10.000091
M148H148HcaTcaC55B.1.1.2140.000277
M148H148LcAtcTt55B.1.1.70.000004
M148H148RcAtcGt55B.1.20.000044
M148H148HcaTcaC55B.1.258.170.00052
M148H148HcaTcaC44AY.1000.000184
M148H148RcAtcGt44AY.1020.000106
M148H148RcAtcGt44AY.1030.000025
M148H148YCatTat44AY.1200.000149
M148H148HcaTcaC44AY.230.000279
M148H148RcAtcGt44AY.270.000259
M148H148RcAtcGt44AY.30.00004
M148H148QcaTcaG44AY.40.000006
M148H148YCatTat44AY.440.000024
M148H148RcAtcGt44AY.60.000165
M148H148QcaTcaA44AY.670.001857
M148H148YCatTat44B.1.1.3170.001647
M148H148NCatAat44B.1.1.70.000004
M148H148YCatTat44B.1.5960.000349
M148H148HcaTcaC44P.1.150.000929
M148H148YCatTat33AY.1130.000427
M148H148HcaTcaC33AY.390.000074
M148H148LcAtcTt33AY.40.000005
M148H148YCatTat33AY.4.20.000065
M148H148YCatTat33AY.50.000062
M148H148YCatTat33AY.99.20.000276
M148H148YCatTat33B0.000383
M148H148RcAtcGt33B.1.1.3020.006224
M148H148YCatTat33B.1.1.390.001529
M148H148YCatTat33B.1.1770.00004
M148H148HcaTcaC33B.1.177.210.000229
M148H148HcaTcaC33B.1.3510.000089
M148H148YCatTat33B.1.4480.007874
M148H148LcAtcTt33B.1.617.20.000011
M148H148RcAtcGt33P.10.000047
M148H148HcaTcaC33Q.10.000379
M148H148YCatTat33Q.30.000435
M148H148HcaTcaC33Q.80.000495
M148H148ECaTGaA22All0
M148H148QcaTcaG22AY.1020.000053
M148H148YCatTat22AY.120.000632
M148H148YCatTat22AY.140.000176
M148H148RcAtcGt22AY.230.000139
M148H148RcAtcGt22AY.250.000012
M148H148HcaTcaC22AY.260.000057
M148H148YCatTat22AY.260.000057
M148H148YCatTat22AY.390.000049
M148H148RcAtcGt22AY.4.20.000043
M148H148del1Cat-at12AY.440.000006
M148H148del1caTca-12AY.440.000006
M148H148HcaTcaC22AY.450.000243
M148H148RcAtcGt22AY.470.000062
M148H148YCatTat22AY.610.00021
M148H148HcaTcaC22AY.750.000112
M148H148QcaTcaG22AY.870.001665
M148H148HcaTcaC22AY.9.20.000073
M148H148YCatTat22AY.930.000546
M148H148HcaTcaC22AY.970.003401
M148H148NCatAat22B.1.10.000036
M148H148NCatAat22B.1.1.2220.000408
M148H148HcaTcaC22B.1.1.280.000622
M148H148HcaTcaC22B.1.1.3180.000604
M148H148HcaTcaC22B.1.1.4640.002946
M148H148RcAtcGt22B.1.1.5190.000079
M148H148del1CaT-aC22B.1.1.70.000002
M148H148YCaTTaC22B.1.177.210.000153
M148H148ECaTGaA22B.1.177.210.000153
M148H148HcaTcaC22B.1.177.450.000762
M148H148YCatTat22B.1.177.600.000437
M148H148YCatTat22B.1.3110.000549
M148H148HcaTcaC22B.1.3190.006098
M148H148HcaTcaC22B.1.3620.003082
M148H148HcaTcaC22B.1.4270.000101
M148H148YCatTat22B.1.5300.014286
M148H148YCatTat22B.1.5950.000522
M148H148QcaTcaG22B.1.617.20.000008
M148H148YCatTat22B.1.6200.001892
M148H148HcaTcaC22B.1.6280.000705
M148H148RcAtcGt22B.580.020408
M148H148YCatTat22C.370.000232
M148H148YCatTat22P.1.100.000539
M148H148HcaTcaC11A.10.000282
M148H148YCatTat11A.20.000662
M148H148YCatTat11A.2.50.000499
M148H148HcaTcaC11A.2.5.10.004808
M148H148NCatAat11A.23.10.000704
M148H148YCatTat11A.270.001656
M148H148PcAtcCt11All0
M148H148GCAtGGt11All0
M148H148KCaTAaG11All0
M148H148LcAtcTt11AY.1020.000027
M148H148del1caTca-11AY.1030.000006
M148H148RcAtcGt11AY.1080.001103
M148H148QcaTcaG11AY.1080.001103
M148H148RcAtcGt11AY.1100.000113
M148H148YCatTat11AY.1100.000113
M148H148YCatTat11AY.1140.000231
M148H148QcaTcaG11AY.1170.000085
M148H148HcaTcaC11AY.1210.000135
M148H148HcaTcaC11AY.130.000161
M148H148RcAtcGt11AY.140.000088
M148H148YCatTat11AY.200.000039
M148H148YCatTat11AY.240.000431
M148H148LcAtcTt11AY.250.000006
M148H148delCAT---11AY.260.000028
M148H148YCatTat11AY.29.10.000221
M148H148YCatTat11AY.30.00001
M148H148RcAtcGt11AY.3.10.000085
M148H148HcaTcaC11AY.330.000067
M148H148QcaTcaG11AY.340.000097
M148H148NCatAat11AY.340.000097
M148H148HcaTcaC11AY.340.000097
M148H148KCaTAaG11AY.340.000097
M148H148RcAtcGt11AY.360.000148
M148H148HcaTcaC11AY.370.000316
M148H148RcAtcGt11AY.39.10.00004
M148H148RcAtcGt11AY.400.000964
M148H148RcAtcGt11AY.420.00004
M148H148QcaTcaG11AY.420.00004
M148H148LcAtcTt11AY.430.000004
M148H148delCAT---11AY.430.000004
M148H148NCatAat11AY.440.000006
M148H148QcaTcaG11AY.450.000122
M148H148YCatTat11AY.450.000122
M148H148HcaTcaC11AY.460.000104
M148H148RcAtcGt11AY.46.40.000165
M148H148HcaTcaC11AY.46.40.000165
M148H148HcaTcaC11AY.46.60.000072
M148H148HcaTcaC11AY.50.000021
M148H148HcaTcaC11AY.520.000814
M148H148RcAtcGt11AY.530.000288
M148H148HcaTcaC11AY.550.000917
M148H148YCatTat11AY.60.000041
M148H148LcAtcTt11AY.600.000938
M148H148HcaTcaC11AY.610.000105
M148H148HcaTcaC11AY.630.000387
M148H148HcaTcaC11AY.650.000533
M148H148YCatTat11AY.670.000464
M148H148HcaTcaC11AY.690.000187
M148H148YCatTat11AY.700.000209
M148H148RcAtcGt11AY.75.10.00018
M148H148YCatTat11AY.9.2.10.001976
M148H148RcAtcGt11AY.980.000079
M148H148HcaTcaC11AY.98.10.000048
M148H148YCatTat11AY.98.10.000048
M148H148HcaTcaC11B0.000128
M148H148LcAtcTt11B0.000128
M148H148RcAtcGt11B.10.000009
M148H148delCAT---11B.10.000009
M148H148HcaTcaC11B.1.10.000018
M148H148RcAtcGt11B.1.10.000018
M148H148HcaTcaC11B.1.1.10.000327
M148H148QcaTcaA11B.1.1.1920.002309
M148H148RcAtcGt11B.1.1.2140.000055
M148H148delCAT---11B.1.1.2210.010101
M148H148YCatTat11B.1.1.250.000569
M148H148YCatTat11B.1.1.2800.003086
M148H148HcaTcaC11B.1.1.3540.004386
M148H148HcaTcaC11B.1.1.4160.000905
M148H148delCAT---11B.1.1.4200.001006
M148H148HcaTcaC11B.1.1.440.00241
M148H148HcaTcaC11B.1.1.4480.002033
M148H148YCatTat11B.1.1.460.004367
M148H148RcAtcGt11B.1.1.5130.012346
M148H148HcaTcaC11B.1.1040.00369
M148H148RcAtcGt11B.1.1600.000031
M148H148YCatTat11B.1.160.160.000929
M148H148HcaTcaC11B.1.1630.02439
M148H148QcaTcaG11B.1.1770.000013
M148H148QcaTcaG11B.1.177.180.00116
M148H148del1CaT-aC11B.1.177.210.000076
M148H148delCAT---11B.1.177.350.000691
M148H148QcaTcaA11B.1.177.350.000691
M148H148YCatTat11B.1.177.440.000519
M148H148HcaTcaC11B.1.177.730.000566
M148H148LcAtcTt11B.1.20.000009
M148H148RcAtcGt11B.1.221.10.002907
M148H148DCatGat11B.1.2430.00007
M148H148delCAT---11B.1.258.110.000396
M148H148RcAtcGt11B.1.2650.001271
M148H148HcaTcaC11B.1.2790.000514
M148H148YCatTat11B.1.3050.002151
M148H148HcaTcaC11B.1.3110.000275
M148H148delCAT---11B.1.3510.00003
M148H148YCatTat11B.1.360.000146
M148H148HcaTcaC11B.1.36.180.00042
M148H148YCatTat11B.1.36.310.001751
M148H148YCatTat11B.1.36.360.000602
M148H148HcaTcaC11B.1.36.360.000602
M148H148HcaTcaC11B.1.3690.000285
M148H148YCatTat11B.1.3900.010638
M148H148delCAT---11B.1.4270.00005
M148H148YCatTat11B.1.4290.000024
M148H148YCatTat11B.1.4530.003236
M148H148QcaTcaG11B.1.466.20.000391
M148H148QcaTcaG11B.1.4700.001404
M148H148YCatTat11B.1.5240.001406
M148H148PcAtcCt11B.1.5250.000113
M148H148HcaTcaC11B.1.5250.000113
M148H148RcAtcGt11B.1.5260.000024
M148H148YCatTat11B.1.5560.007519
M148H148YCatTat11B.1.5610.000397
M148H148YCatTat11B.1.5640.000426
M148H148QcaTcaG11B.1.5650.00081
M148H148QcaTcaG11B.1.5820.000491
M148H148HcaTcaC11B.1.5960.000087
M148H148YCatTat11B.1.617.10.000129
M148H148delCAT---11B.1.617.20.000004
M148H148GCAtGGt11B.1.617.20.000004
M148H148HcaTcaC11B.1.6210.000089
M148H148RcAtcGt11B.1.910.002075
M148H148QcaTcaG11B.1.940.027027
M148H148HcaTcaC11B.400.000364
M148H148HcaTcaC11B.610.005747
M148H148HcaTcaC11D.20.000075
M148H148RcAtcGt11D.20.000075
M148H148NCatAat11P.10.000016
M148H148HcaTcaC11P.1.140.000048
M148H148RcAtcGt11P.1.140.000048
M148H148RcAtcGt11P.1.150.000232
M148H148YCatTat11P.1.160.000374
M148H148YCatTat11Q.10.000126