CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = M : CodonNum = 143

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
M	143	V143V		syn	gtG	gtT	13672	9902	0.724254	26949-26951
M	143	V143V		syn	gtG	gtC	13672	3296	0.241077	26949-26951
M	143	V143V		syn	gtG	gtA	13672	474	0.0346694	26949-26951
M	143	V143del		del	GTG	---	128	128	1	26949-26951
M	143	V143L		nonsyn	Gtg	Ttg	123	113	0.918699	26949-26951
M	143	V143L		nonsyn	Gtg	Ctg	123	10	0.0813008	26949-26951
M	143	V143del1		del	Gtg	-tg	5	4	0.8	26949-26951
M	143	V143del1		del	gtG	gt-	5	1	0.2	26949-26951
M	143	V143M		nonsyn	Gtg	Atg	4	4	1	26949-26951
M	143	V143A		nonsyn	gTg	gCg	3	3	1	26949-26951
M	143	V143T		nonsyn	GTG	ACA	2	2	1	26949-26951
M	143	V143P		nonsyn	GTg	CCg	2	2	1	26949-26951
M	143	V143E		nonsyn	gTg	gAg	2	2	1	26949-26951
M	143	V143G		nonsyn	gTg	gGg	1	1	1	26949-26951
M	143	V143del2		del	gTG	g--	1	1	1	26949-26951
M	143	V143C		nonsyn	GTG	TGC	1	1	1	26949-26951
M	143	V143I		nonsyn	GtG	AtA	1	1	1	26949-26951
M	143	V143F		nonsyn	GtG	TtC	1	1	1	26949-26951

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
M	143	V143V	gtG	gtT	9902	13672	All	0.001894
M	143	V143V	gtG	gtC	3296	13672	All	0.00063
M	143	V143V	gtG	gtA	474	13672	All	0.000091
M	143	V143V	gtG	gtT	2273	2376	AY.4	0.003538
M	143	V143V	gtG	gtC	99	2376	AY.4	0.000154
M	143	V143V	gtG	gtA	4	2376	AY.4	0.000006
M	143	V143V	gtG	gtT	765	1532	B.1.1.7	0.000685
M	143	V143V	gtG	gtC	696	1532	B.1.1.7	0.000623
M	143	V143V	gtG	gtA	71	1532	B.1.1.7	0.000064
M	143	V143V	gtG	gtT	1305	1328	B.1.2	0.011491
M	143	V143V	gtG	gtC	16	1328	B.1.2	0.000141
M	143	V143V	gtG	gtA	7	1328	B.1.2	0.000062
M	143	V143V	gtG	gtT	632	783	B.1.617.2	0.00238
M	143	V143V	gtG	gtC	146	783	B.1.617.2	0.00055
M	143	V143V	gtG	gtA	5	783	B.1.617.2	0.000019
M	143	V143V	gtG	gtC	699	699	B.1.1.433	0.995726
M	143	V143V	gtG	gtT	627	627	B.1.361	0.80799
M	143	V143V	gtG	gtT	559	561	B.1.258.17	0.05812
M	143	V143V	gtG	gtA	1	561	B.1.258.17	0.000104
M	143	V143V	gtG	gtC	1	561	B.1.258.17	0.000104
M	143	V143V	gtG	gtC	336	340	AY.110	0.037863
M	143	V143V	gtG	gtT	4	340	AY.110	0.000451
M	143	V143V	gtG	gtT	212	285	AY.43	0.000939
M	143	V143V	gtG	gtC	72	285	AY.43	0.000319
M	143	V143V	gtG	gtA	1	285	AY.43	0.000004
M	143	V143V	gtG	gtT	221	263	B.1	0.002024
M	143	V143V	gtG	gtC	40	263	B.1	0.000366
M	143	V143V	gtG	gtA	2	263	B.1	0.000018
M	143	V143V	gtG	gtA	253	253	B.1.39	0.988281
M	143	V143V	gtG	gtT	140	213	AY.44	0.000852
M	143	V143V	gtG	gtC	61	213	AY.44	0.000371
M	143	V143V	gtG	gtA	12	213	AY.44	0.000073
M	143	V143V	gtG	gtC	114	211	AY.103	0.000708
M	143	V143V	gtG	gtT	96	211	AY.103	0.000596
M	143	V143V	gtG	gtA	1	211	AY.103	0.000006
M	143	V143V	gtG	gtT	109	175	B.1.177	0.001435
M	143	V143V	gtG	gtA	52	175	B.1.177	0.000685
M	143	V143V	gtG	gtC	14	175	B.1.177	0.000184
M	143	V143V	gtG	gtT	107	160	AY.25	0.000644
M	143	V143V	gtG	gtC	53	160	AY.25	0.000319
M	143	V143V	gtG	gtT	143	146	AY.36	0.021195
M	143	V143V	gtG	gtC	3	146	AY.36	0.000445
M	143	V143V	gtG	gtC	133	145	AY.46.6	0.009604
M	143	V143V	gtG	gtT	12	145	AY.46.6	0.000866
M	143	V143V	gtG	gtT	117	144	B.1.1	0.002122
M	143	V143V	gtG	gtC	23	144	B.1.1	0.000417
M	143	V143V	gtG	gtA	4	144	B.1.1	0.000073
M	143	V143V	gtG	gtT	83	139	AY.5	0.001714
M	143	V143V	gtG	gtC	56	139	AY.5	0.001156
M	143	V143del	GTG	---	128	128	All	0.000024
M	143	V143L	Gtg	Ttg	113	123	All	0.000022
M	143	V143L	Gtg	Ctg	10	123	All	0.000002
M	143	V143V	gtG	gtT	119	119	B.1.1.232	0.215971
M	143	V143V	gtG	gtT	79	111	P.1	0.001245
M	143	V143V	gtG	gtC	32	111	P.1	0.000504
M	143	V143V	gtG	gtT	63	108	B.1.429	0.001482
M	143	V143V	gtG	gtA	32	108	B.1.429	0.000753
M	143	V143V	gtG	gtC	13	108	B.1.429	0.000306
M	143	V143V	gtG	gtT	97	107	B.1.526	0.00228
M	143	V143V	gtG	gtC	10	107	B.1.526	0.000235
M	143	V143V	gtG	gtT	91	105	AY.39	0.002249
M	143	V143V	gtG	gtC	14	105	AY.39	0.000346
M	143	V143V	gtG	gtT	104	104	B.1.1.263	0.161994
M	143	V143del	GTG	---	103	103	B.1.177.21	0.007876
M	143	V143V	gtG	gtT	73	89	AY.3	0.000726
M	143	V143V	gtG	gtC	16	89	AY.3	0.000159
M	143	V143V	gtG	gtT	71	86	AY.102	0.001882
M	143	V143V	gtG	gtC	15	86	AY.102	0.000398
M	143	V143V	gtG	gtT	82	83	B.1.619.1	0.052598
M	143	V143V	gtG	gtC	1	83	B.1.619.1	0.000641
M	143	V143V	gtG	gtT	69	69	AY.13	0.011108
M	143	V143V	gtG	gtC	50	69	AY.32	0.026624
M	143	V143V	gtG	gtT	19	69	AY.32	0.010117
M	143	V143V	gtG	gtT	63	63	B.1.258.20	1
M	143	V143V	gtG	gtT	54	59	B.1.1.519	0.002144
M	143	V143V	gtG	gtC	5	59	B.1.1.519	0.000199
M	143	V143V	gtG	gtT	34	58	AY.20	0.001321
M	143	V143V	gtG	gtC	23	58	AY.20	0.000894
M	143	V143V	gtG	gtA	1	58	AY.20	0.000039
M	143	V143V	gtG	gtT	47	55	B.1.258	0.003128
M	143	V143V	gtG	gtC	8	55	B.1.258	0.000532
M	143	V143V	gtG	gtT	29	53	AY.120	0.001078
M	143	V143V	gtG	gtC	24	53	AY.120	0.000892
M	143	V143V	gtG	gtT	41	46	AY.113	0.005838
M	143	V143V	gtG	gtC	5	46	AY.113	0.000712
M	143	V143V	gtG	gtT	44	44	AY.6	0.00181
M	143	V143V	gtG	gtT	38	42	AY.26	0.001076
M	143	V143V	gtG	gtC	4	42	AY.26	0.000113
M	143	V143L	Gtg	Ttg	36	39	B.1.1.7	0.000032
M	143	V143L	Gtg	Ctg	3	39	B.1.1.7	0.000003
M	143	V143V	gtG	gtC	39	39	B.1.177.41	0.0975
M	143	V143V	gtG	gtC	39	39	B.1.177.47	0.506494
M	143	V143V	gtG	gtC	25	37	AY.9.2	0.000918
M	143	V143V	gtG	gtT	12	37	AY.9.2	0.000441
M	143	V143V	gtG	gtT	37	37	C.16	0.039236
M	143	V143V	gtG	gtT	35	36	B.1.258.11	0.013872
M	143	V143V	gtG	gtC	1	36	B.1.258.11	0.000396
M	143	V143V	gtG	gtT	35	35	B.1.160	0.001092
M	143	V143V	gtG	gtT	23	35	B.1.351	0.000684
M	143	V143V	gtG	gtC	12	35	B.1.351	0.000357
M	143	V143V	gtG	gtC	29	34	AY.42	0.001167
M	143	V143V	gtG	gtT	5	34	AY.42	0.000201
M	143	V143V	gtG	gtT	33	33	B.1.1.434	0.011502
M	143	V143V	gtG	gtT	23	32	AY.119	0.000812
M	143	V143V	gtG	gtC	9	32	AY.119	0.000318
M	143	V143V	gtG	gtC	28	30	B.1.234	0.003694
M	143	V143V	gtG	gtT	2	30	B.1.234	0.000264
M	143	V143V	gtG	gtT	19	30	B.1.427	0.000959
M	143	V143V	gtG	gtC	11	30	B.1.427	0.000555
M	143	V143V	gtG	gtT	23	28	B.1.36	0.003356
M	143	V143V	gtG	gtC	5	28	B.1.36	0.00073
M	143	V143V	gtG	gtC	15	27	AY.47	0.000467
M	143	V143V	gtG	gtA	8	27	AY.47	0.000249
M	143	V143V	gtG	gtT	4	27	AY.47	0.000124
M	143	V143V	gtG	gtT	21	25	AY.84	0.009186
M	143	V143V	gtG	gtC	4	25	AY.84	0.00175
M	143	V143V	gtG	gtT	18	25	B.1.36.29	0.009312
M	143	V143V	gtG	gtC	7	25	B.1.36.29	0.003621
M	143	V143V	gtG	gtT	17	24	B.1.243	0.001183
M	143	V143V	gtG	gtC	7	24	B.1.243	0.000487
M	143	V143V	gtG	gtC	13	23	AY.4.2	0.000282
M	143	V143V	gtG	gtT	10	23	AY.4.2	0.000217
M	143	V143V	gtG	gtC	18	22	AY.29	0.000284
M	143	V143V	gtG	gtT	4	22	AY.29	0.000063
M	143	V143V	gtG	gtT	22	22	B.1.1.48	0.063218
M	143	V143V	gtG	gtT	16	21	AY.46	0.001665
M	143	V143V	gtG	gtC	5	21	AY.46	0.00052
M	143	V143V	gtG	gtT	13	20	AY.33	0.000868
M	143	V143V	gtG	gtC	6	20	AY.33	0.000401
M	143	V143V	gtG	gtA	1	20	AY.33	0.000067
M	143	V143V	gtG	gtT	15	20	AY.61	0.001572
M	143	V143V	gtG	gtC	5	20	AY.61	0.000524
M	143	V143V	gtG	gtT	16	19	B.1.596	0.001394
M	143	V143V	gtG	gtC	3	19	B.1.596	0.000261
M	143	V143V	gtG	gtT	17	17	AY.107	0.007922
M	143	V143V	gtG	gtT	16	17	C.37	0.001857
M	143	V143V	gtG	gtC	1	17	C.37	0.000116
M	143	V143V	gtG	gtT	14	16	B	0.001789
M	143	V143V	gtG	gtA	1	16	B	0.000128
M	143	V143V	gtG	gtC	1	16	B	0.000128
M	143	V143V	gtG	gtT	16	16	B.1.3	0.041885
M	143	V143V	gtG	gtT	10	15	AY.23	0.000697
M	143	V143V	gtG	gtC	5	15	AY.23	0.000349
M	143	V143V	gtG	gtT	15	15	AY.67	0.006964
M	143	V143V	gtG	gtC	9	15	AY.98.1	0.000436
M	143	V143V	gtG	gtT	6	15	AY.98.1	0.000291
M	143	V143del	GTG	---	15	15	B.1.1.7	0.000013
M	143	V143V	gtG	gtT	15	15	B.1.221	0.001065
M	143	V143V	gtG	gtT	11	14	AY.121	0.001488
M	143	V143V	gtG	gtC	3	14	AY.121	0.000406
M	143	V143V	gtG	gtT	10	14	AY.90	0.006845
M	143	V143V	gtG	gtC	4	14	AY.90	0.002738
M	143	V143V	gtG	gtT	11	14	AY.99.2	0.001014
M	143	V143V	gtG	gtC	3	14	AY.99.2	0.000276
M	143	V143V	gtG	gtT	13	14	B.1.1.214	0.000721
M	143	V143V	gtG	gtC	1	14	B.1.1.214	0.000055
M	143	V143V	gtG	gtT	14	14	B.1.1.28	0.004357
M	143	V143V	gtG	gtT	12	13	AY.16	0.004556
M	143	V143V	gtG	gtC	1	13	AY.16	0.00038
M	143	V143V	gtG	gtT	8	13	AY.45	0.000973
M	143	V143V	gtG	gtC	5	13	AY.45	0.000608
M	143	V143V	gtG	gtT	12	13	AY.46.4	0.001974
M	143	V143V	gtG	gtC	1	13	AY.46.4	0.000165
M	143	V143V	gtG	gtT	13	13	B.1.1.216	0.011576
M	143	V143V	gtG	gtT	10	13	B.1.1.318	0.003018
M	143	V143V	gtG	gtC	3	13	B.1.1.318	0.000905
M	143	V143V	gtG	gtT	12	13	B.1.1.326	0.021127
M	143	V143V	gtG	gtC	1	13	B.1.1.326	0.001761
M	143	V143V	gtG	gtT	7	13	B.1.637	0.000512
M	143	V143V	gtG	gtC	6	13	B.1.637	0.000438
M	143	V143V	gtG	gtT	12	13	P.1.14	0.000574
M	143	V143V	gtG	gtC	1	13	P.1.14	0.000048
M	143	V143V	gtG	gtT	9	12	AY.100	0.000414
M	143	V143V	gtG	gtC	3	12	AY.100	0.000138
M	143	V143V	gtG	gtT	12	12	B.1.1.1	0.00392
M	143	V143V	gtG	gtC	7	12	B.1.1.306	0.003069
M	143	V143V	gtG	gtT	5	12	B.1.1.306	0.002192
M	143	V143V	gtG	gtT	8	12	R.1	0.00072
M	143	V143V	gtG	gtC	4	12	R.1	0.00036
M	143	V143V	gtG	gtT	8	11	AY.27	0.000518
M	143	V143V	gtG	gtC	3	11	AY.27	0.000194
M	143	V143V	gtG	gtT	6	11	AY.3.1	0.000512
M	143	V143V	gtG	gtC	5	11	AY.3.1	0.000426
M	143	V143V	gtG	gtT	11	11	AY.87	0.009159
M	143	V143V	gtG	gtT	11	11	B.1.1.222	0.002244
M	143	V143V	gtG	gtT	9	10	AY.118	0.000564
M	143	V143V	gtG	gtC	1	10	AY.118	0.000063
M	143	V143V	gtG	gtT	5	10	AY.7.1	0.000564
M	143	V143V	gtG	gtA	3	10	AY.7.1	0.000338
M	143	V143V	gtG	gtC	2	10	AY.7.1	0.000225
M	143	V143V	gtG	gtC	9	10	B.1.351.2	0.002723
M	143	V143V	gtG	gtT	1	10	B.1.351.2	0.000303
M	143	V143V	gtG	gtT	10	10	B.1.575	0.003034
M	143	V143V	gtG	gtC	8	10	B.1.621	0.000708
M	143	V143V	gtG	gtT	2	10	B.1.621	0.000177
M	143	V143V	gtG	gtC	9	10	B.1.628	0.003171
M	143	V143V	gtG	gtT	1	10	B.1.628	0.000352
M	143	V143V	gtG	gtC	10	10	B.1.97	0.25641
M	143	V143V	gtG	gtT	9	9	A.2.5	0.004491
M	143	V143V	gtG	gtT	9	9	AY.34	0.000873
M	143	V143V	gtG	gtT	8	9	AY.39.1	0.000317
M	143	V143V	gtG	gtC	1	9	AY.39.1	0.00004
M	143	V143V	gtG	gtT	9	9	AY.99	0.009444
M	143	V143V	gtG	gtT	7	9	B.1.595	0.001827
M	143	V143V	gtG	gtC	2	9	B.1.595	0.000522
M	143	V143V	gtG	gtT	8	8	AY.75	0.000448
M	143	V143V	gtG	gtT	8	8	B.1.1.10	0.008919
M	143	V143V	gtG	gtT	8	8	B.1.1.333	0.008611
M	143	V143V	gtG	gtT	7	8	B.1.466.2	0.002739
M	143	V143V	gtG	gtC	1	8	B.1.466.2	0.000391
M	143	V143V	gtG	gtT	6	8	D.2	0.00045
M	143	V143V	gtG	gtC	2	8	D.2	0.00015
M	143	V143V	gtG	gtC	4	8	P.1.15	0.000929
M	143	V143V	gtG	gtT	4	8	P.1.15	0.000929
M	143	V143V	gtG	gtT	7	7	AY.116.1	0.00218
M	143	V143V	gtG	gtT	7	7	AY.120.2.1	0.003488
M	143	V143L	Gtg	Ttg	6	7	AY.4	0.000009
M	143	V143L	Gtg	Ctg	1	7	AY.4	0.000002
M	143	V143V	gtG	gtT	6	7	AY.41	0.001764
M	143	V143V	gtG	gtC	1	7	AY.41	0.000294
M	143	V143L	Gtg	Ttg	7	7	B.1.2	0.000062
M	143	V143V	gtG	gtT	7	7	B.1.617.1	0.000903
M	143	V143V	gtG	gtC	6	6	A.28	0.015873
M	143	V143V	gtG	gtT	6	6	AY.117	0.000507
M	143	V143L	Gtg	Ttg	6	6	AY.39.1	0.000238
M	143	V143L	Gtg	Ttg	6	6	AY.44	0.000037
M	143	V143V	gtG	gtA	6	6	AY.46.2	0.003812
M	143	V143V	gtG	gtT	5	6	AY.62	0.002179
M	143	V143V	gtG	gtC	1	6	AY.62	0.000436
M	143	V143V	gtG	gtT	6	6	B.1.1.348	0.004777
M	143	V143V	gtG	gtT	6	6	B.1.128	0.003812
M	143	V143V	gtG	gtT	6	6	B.1.577	0.004124
M	143	V143V	gtG	gtA	2	6	P.1.7	0.000639
M	143	V143V	gtG	gtC	2	6	P.1.7	0.000639
M	143	V143V	gtG	gtT	2	6	P.1.7	0.000639
M	143	V143V	gtG	gtT	3	6	Q.4	0.001364
M	143	V143V	gtG	gtC	3	6	Q.4	0.001364
M	143	V143V	gtG	gtT	5	5	A	0.001935
M	143	V143V	gtG	gtT	5	5	AD.2	0.001095
M	143	V143del1	Gtg	-tg	4	5	All	0.000001
M	143	V143del1	gtG	gt-	1	5	All	0
M	143	V143L	Gtg	Ctg	5	5	AY.25	0.00003
M	143	V143V	gtG	gtT	5	5	AY.65	0.002665
M	143	V143V	gtG	gtT	3	5	AY.75.1	0.000541
M	143	V143V	gtG	gtC	2	5	AY.75.1	0.000361
M	143	V143V	gtG	gtT	4	5	AY.9.1	0.000335
M	143	V143V	gtG	gtC	1	5	AY.9.1	0.000084
M	143	V143V	gtG	gtT	4	5	B.1.1.70	0.001364
M	143	V143V	gtG	gtC	1	5	B.1.1.70	0.000341
M	143	V143V	gtG	gtC	5	5	B.1.177.81	0.000947
M	143	V143V	gtG	gtT	5	5	B.1.468	0.028571
M	143	V143V	gtG	gtT	5	5	B.1.580	0.020325
M	143	V143V	gtG	gtT	5	5	P.1.2	0.00578
M	143	V143V	gtG	gtT	2	4	A.23.1	0.001408
M	143	V143V	gtG	gtC	2	4	A.23.1	0.001408
M	143	V143M	Gtg	Atg	4	4	All	0.000001
M	143	V143V	gtG	gtT	3	4	AY.105	0.001929
M	143	V143V	gtG	gtC	1	4	AY.105	0.000643
M	143	V143V	gtG	gtT	3	4	AY.14	0.000264
M	143	V143V	gtG	gtC	1	4	AY.14	0.000088
M	143	V143V	gtG	gtC	3	4	AY.2	0.001068
M	143	V143V	gtG	gtT	1	4	AY.2	0.000356
M	143	V143V	gtG	gtT	2	4	AY.29.1	0.000441
M	143	V143V	gtG	gtC	2	4	AY.29.1	0.000441
M	143	V143L	Gtg	Ttg	4	4	AY.43	0.000018
M	143	V143V	gtG	gtT	3	4	AY.5.3	0.001012
M	143	V143V	gtG	gtC	1	4	AY.5.3	0.000337
M	143	V143V	gtG	gtT	4	4	AY.54	0.000381
M	143	V143V	gtG	gtT	4	4	AY.55	0.00367
M	143	V143V	gtG	gtT	4	4	AY.68	0.001095
M	143	V143V	gtG	gtT	4	4	AY.7	0.000784
M	143	V143V	gtG	gtT	4	4	AY.9	0.00027
M	143	V143V	gtG	gtT	2	4	AY.98	0.000158
M	143	V143V	gtG	gtC	2	4	AY.98	0.000158
M	143	V143V	gtG	gtC	3	4	B.1.1.12	0.022388
M	143	V143V	gtG	gtT	1	4	B.1.1.12	0.007463
M	143	V143V	gtG	gtC	3	4	B.1.1.37	0.000579
M	143	V143V	gtG	gtT	1	4	B.1.1.37	0.000193
M	143	V143V	gtG	gtT	4	4	B.1.1.409	0.011331
M	143	V143V	gtG	gtT	4	4	B.1.177.8	0.00301
M	143	V143V	gtG	gtT	4	4	B.1.206	0.003263
M	143	V143V	gtG	gtT	3	4	B.1.525	0.000339
M	143	V143V	gtG	gtC	1	4	B.1.525	0.000113
M	143	V143V	gtG	gtT	4	4	B.1.619	0.003484
M	143	V143V	gtG	gtT	4	4	B.1.623	0.002146
M	143	V143V	gtG	gtT	4	4	B.40	0.001457
M	143	V143V	gtG	gtT	4	4	P.1.1	0.001271
M	143	V143V	gtG	gtT	4	4	P.2	0.000747
M	143	V143A	gTg	gCg	3	3	All	0.000001
M	143	V143V	gtG	gtT	2	3	AY.1	0.000791
M	143	V143V	gtG	gtC	1	3	AY.1	0.000396
M	143	V143V	gtG	gtT	2	3	AY.106	0.00067
M	143	V143V	gtG	gtC	1	3	AY.106	0.000335
M	143	V143V	gtG	gtC	2	3	AY.108	0.002205
M	143	V143V	gtG	gtT	1	3	AY.108	0.001103
M	143	V143V	gtG	gtT	3	3	AY.115	0.015625
M	143	V143V	gtG	gtT	3	3	AY.116	0.00086
M	143	V143V	gtG	gtA	2	3	AY.12	0.000632
M	143	V143V	gtG	gtT	1	3	AY.12	0.000316
M	143	V143L	Gtg	Ttg	3	3	AY.29	0.000047
M	143	V143V	gtG	gtC	2	3	AY.37	0.000632
M	143	V143V	gtG	gtT	1	3	AY.37	0.000316
M	143	V143V	gtG	gtC	3	3	AY.4.3	0.002525
M	143	V143V	gtG	gtT	3	3	AY.4.4	0.001227
M	143	V143V	gtG	gtT	3	3	AY.52	0.002443
M	143	V143V	gtG	gtT	2	3	AY.57	0.001312
M	143	V143V	gtG	gtC	1	3	AY.57	0.000656
M	143	V143V	gtG	gtT	3	3	AY.64	0.001786
M	143	V143V	gtG	gtT	3	3	AY.79	0.003632
M	143	V143V	gtG	gtT	3	3	AY.85	0.001282
M	143	V143V	gtG	gtC	3	3	AY.9.2.1	0.005929
M	143	V143V	gtG	gtC	3	3	AY.92	0.000862
M	143	V143L	Gtg	Ttg	3	3	B.1	0.000027
M	143	V143V	gtG	gtC	2	3	B.1.1.33	0.000842
M	143	V143V	gtG	gtT	1	3	B.1.1.33	0.000421
M	143	V143V	gtG	gtT	3	3	B.1.1.521	0.016043
M	143	V143V	gtG	gtT	3	3	B.1.1.54	0.009063
M	143	V143V	gtG	gtT	3	3	B.1.104	0.01107
M	143	V143L	Gtg	Ttg	3	3	B.1.177	0.00004
M	143	V143V	gtG	gtT	2	3	B.1.177.57	0.000562
M	143	V143V	gtG	gtC	1	3	B.1.177.57	0.000281
M	143	V143V	gtG	gtT	3	3	B.1.177.82	0.001432
M	143	V143V	gtG	gtC	3	3	B.1.189	0.012876
M	143	V143L	Gtg	Ttg	3	3	B.1.221	0.000213
M	143	V143V	gtG	gtC	2	3	B.1.232	0.001075
M	143	V143V	gtG	gtT	1	3	B.1.232	0.000537
M	143	V143V	gtG	gtT	3	3	B.1.236	0.00616
M	143	V143V	gtG	gtT	3	3	B.1.240	0.000647
M	143	V143V	gtG	gtT	3	3	B.1.324	0.004815
M	143	V143V	gtG	gtT	3	3	B.1.330	0.085714
M	143	V143V	gtG	gtT	2	3	B.1.369	0.00057
M	143	V143V	gtG	gtC	1	3	B.1.369	0.000285
M	143	V143V	gtG	gtT	3	3	B.1.409	0.002344
M	143	V143V	gtG	gtC	3	3	B.1.506	0.071429
M	143	V143V	gtG	gtT	3	3	B.1.524	0.004219
M	143	V143V	gtG	gtT	3	3	B.1.597	0.013889
M	143	V143L	Gtg	Ttg	3	3	B.1.617.2	0.000011
M	143	V143V	gtG	gtT	3	3	B.1.78	0.025641
M	143	V143V	gtG	gtT	3	3	Q.3	0.000435
M	143	V143V	gtG	gtT	2	2	A.1	0.000564
M	143	V143E	gTg	gAg	2	2	All	0
M	143	V143P	GTg	CCg	2	2	All	0
M	143	V143T	GTG	ACA	2	2	All	0
M	143	V143V	gtG	gtT	2	2	AY.101	0.000981
M	143	V143L	Gtg	Ttg	2	2	AY.103	0.000012
M	143	V143V	gtG	gtT	2	2	AY.104	0.003968
M	143	V143V	gtG	gtT	2	2	AY.114	0.000462
M	143	V143L	Gtg	Ttg	2	2	AY.120	0.000074
M	143	V143V	gtG	gtT	2	2	AY.24	0.000862
M	143	V143L	Gtg	Ttg	2	2	AY.34	0.000194
M	143	V143V	gtG	gtT	2	2	AY.35	0.000466
M	143	V143V	gtG	gtC	1	2	AY.48	0.000465
M	143	V143V	gtG	gtT	1	2	AY.48	0.000465
M	143	V143V	gtG	gtT	1	2	AY.5.4	0.000277
M	143	V143V	gtG	gtC	1	2	AY.5.4	0.000277
M	143	V143V	gtG	gtT	2	2	AY.50	0.001599
M	143	V143V	gtG	gtT	2	2	AY.56	0.00321
M	143	V143V	gtG	gtT	2	2	AY.63	0.000774
M	143	V143V	gtG	gtT	2	2	AY.70	0.000417
M	143	V143V	gtG	gtC	1	2	AY.71	0.000475
M	143	V143V	gtG	gtT	1	2	AY.71	0.000475
M	143	V143V	gtG	gtT	1	2	AY.73	0.000665
M	143	V143V	gtG	gtC	1	2	AY.73	0.000665
M	143	V143L	Gtg	Ttg	2	2	AY.75	0.000112
M	143	V143V	gtG	gtT	2	2	AY.8	0.001212
M	143	V143L	Gtg	Ttg	2	2	AY.9	0.000135
M	143	V143V	gtG	gtC	2	2	AY.93	0.000546
M	143	V143V	gtG	gtT	2	2	AY.99.1	0.003106
M	143	V143del1	Gtg	-tg	2	2	B.1	0.000018
M	143	V143V	gtG	gtT	2	2	B.1.1.130	0.030769
M	143	V143V	gtG	gtT	2	2	B.1.1.170	0.002494
M	143	V143V	gtG	gtC	2	2	B.1.1.277	0.001517
M	143	V143V	gtG	gtT	2	2	B.1.1.284	0.000215
M	143	V143V	gtG	gtT	1	2	B.1.1.294	0.001266
M	143	V143V	gtG	gtC	1	2	B.1.1.294	0.001266
M	143	V143V	gtG	gtT	2	2	B.1.1.316	0.00185
M	143	V143V	gtG	gtT	2	2	B.1.1.398	0.006452
M	143	V143V	gtG	gtT	2	2	B.1.1.444	0.285714
M	143	V143V	gtG	gtT	2	2	B.1.1.50	0.001358
M	143	V143V	gtG	gtT	2	2	B.1.1.528	0.009615
M	143	V143V	gtG	gtT	2	2	B.1.112	0.010363
M	143	V143V	gtG	gtT	2	2	B.1.147	0.001512
M	143	V143V	gtG	gtT	2	2	B.1.170	0.008621
M	143	V143V	gtG	gtC	2	2	B.1.177.12	0.000303
M	143	V143V	gtG	gtT	2	2	B.1.177.20	0.003035
M	143	V143T	GTG	ACA	2	2	B.1.177.21	0.000153
M	143	V143V	gtG	gtC	1	2	B.1.177.21	0.000076
M	143	V143V	gtG	gtT	1	2	B.1.177.21	0.000076
M	143	V143V	gtG	gtT	2	2	B.1.177.4	0.000422
M	143	V143V	gtG	gtT	2	2	B.1.177.46	0.001837
M	143	V143V	gtG	gtT	2	2	B.1.177.73	0.001133
M	143	V143V	gtG	gtC	1	2	B.1.177.87	0.000728
M	143	V143V	gtG	gtT	1	2	B.1.177.87	0.000728
M	143	V143V	gtG	gtT	2	2	B.1.260	0.006689
M	143	V143V	gtG	gtT	2	2	B.1.264	0.024691
M	143	V143V	gtG	gtT	1	2	B.1.311	0.000275
M	143	V143V	gtG	gtC	1	2	B.1.311	0.000275
M	143	V143V	gtG	gtT	2	2	B.1.36.1	0.002281
M	143	V143V	gtG	gtT	2	2	B.1.36.18	0.00084
M	143	V143V	gtG	gtT	2	2	B.1.377	0.009132
M	143	V143V	gtG	gtT	2	2	B.1.396	0.001411
M	143	V143L	Gtg	Ttg	2	2	B.1.429	0.000047
M	143	V143V	gtG	gtT	2	2	B.1.462	0.014493
M	143	V143V	gtG	gtT	2	2	B.1.469	0.00722
M	143	V143V	gtG	gtT	2	2	B.1.537	0.04
M	143	V143V	gtG	gtT	2	2	B.1.560	0.009259
M	143	V143V	gtG	gtT	2	2	B.1.582	0.000981
M	143	V143V	gtG	gtC	2	2	B.1.609	0.000959
M	143	V143V	gtG	gtT	2	2	B.3	0.001661
M	143	V143V	gtG	gtT	1	2	C.36	0.000911
M	143	V143V	gtG	gtC	1	2	C.36	0.000911
M	143	V143V	gtG	gtT	2	2	P.1.17	0.000324
M	143	V143V	gtG	gtT	1	2	P.1.8	0.004785
M	143	V143V	gtG	gtC	1	2	P.1.8	0.004785
M	143	V143V	gtG	gtT	2	2	P.6	0.006289
M	143	V143V	gtG	gtT	1	1	A.27	0.001656
M	143	V143V	gtG	gtT	1	1	AE.4	0.043478
M	143	V143V	gtG	gtT	1	1	AE.8	0.000489
M	143	V143V	gtG	gtT	1	1	AH.3	0.003802
M	143	V143C	GTG	TGC	1	1	All	0
M	143	V143I	GtG	AtA	1	1	All	0
M	143	V143del2	gTG	g--	1	1	All	0
M	143	V143G	gTg	gGg	1	1	All	0
M	143	V143F	GtG	TtC	1	1	All	0
M	143	V143V	gtG	gtC	1	1	AU.2	0.002421
M	143	V143V	gtG	gtT	1	1	AU.3	0.00211
M	143	V143V	gtG	gtT	1	1	AY.10	0.00053
M	143	V143L	Gtg	Ttg	1	1	AY.102	0.000027
M	143	V143C	GTG	TGC	1	1	AY.103	0.000006
M	143	V143P	GTg	CCg	1	1	AY.103	0.000006
M	143	V143L	Gtg	Ttg	1	1	AY.111	0.000183
M	143	V143V	gtG	gtT	1	1	AY.111	0.000183
M	143	V143L	Gtg	Ttg	1	1	AY.118	0.000063
M	143	V143M	Gtg	Atg	1	1	AY.120	0.000037
M	143	V143V	gtG	gtT	1	1	AY.120.1	0.000321
M	143	V143V	gtG	gtT	1	1	AY.120.2	0.001285
M	143	V143L	Gtg	Ttg	1	1	AY.13	0.000161
M	143	V143L	Gtg	Ttg	1	1	AY.16.1	0.00047
M	143	V143V	gtG	gtT	1	1	AY.16.1	0.00047
M	143	V143V	gtG	gtT	1	1	AY.19	0.00114
M	143	V143V	gtG	gtT	1	1	AY.21	0.001898
M	143	V143del	GTG	---	1	1	AY.26	0.000028
M	143	V143L	Gtg	Ttg	1	1	AY.27	0.000065
M	143	V143L	Gtg	Ttg	1	1	AY.3	0.00001
M	143	V143V	gtG	gtT	1	1	AY.30	0.000396
M	143	V143L	Gtg	Ttg	1	1	AY.33	0.000067
M	143	V143V	gtG	gtT	1	1	AY.34.1	0.00051
M	143	V143L	Gtg	Ttg	1	1	AY.36	0.000148
M	143	V143A	gTg	gCg	1	1	AY.39	0.000025
M	143	V143M	Gtg	Atg	1	1	AY.4	0.000002
M	143	V143V	gtG	gtT	1	1	AY.4.1	0.000737
M	143	V143L	Gtg	Ttg	1	1	AY.4.2	0.000022
M	143	V143V	gtG	gtT	1	1	AY.4.2.1	0.000149
M	143	V143V	gtG	gtT	1	1	AY.4.5	0.000107
M	143	V143M	Gtg	Atg	1	1	AY.42	0.00004
M	143	V143A	gTg	gCg	1	1	AY.44	0.000006
M	143	V143V	gtG	gtA	1	1	AY.46.1	0.001027
M	143	V143V	gtG	gtT	1	1	AY.51	0.000909
M	143	V143V	gtG	gtC	1	1	AY.53	0.000288
M	143	V143V	gtG	gtT	1	1	AY.59	0.00053
M	143	V143P	GTg	CCg	1	1	AY.60	0.000938
M	143	V143V	gtG	gtT	1	1	AY.60	0.000938
M	143	V143V	gtG	gtT	1	1	AY.72	0.001361
M	143	V143V	gtG	gtC	1	1	AY.74	0.000116
M	143	V143L	Gtg	Ttg	1	1	AY.74	0.000116
M	143	V143L	Gtg	Ttg	1	1	AY.75.1	0.00018
M	143	V143V	gtG	gtC	1	1	AY.78	0.001541
M	143	V143V	gtG	gtT	1	1	AY.81	0.001992
M	143	V143V	gtG	gtT	1	1	AY.82	0.001357
M	143	V143L	Gtg	Ctg	1	1	AY.9.1	0.000084
M	143	V143L	Gtg	Ttg	1	1	AY.9.2	0.000037
M	143	V143V	gtG	gtT	1	1	AY.94	0.000443
M	143	V143V	gtG	gtT	1	1	AY.95	0.000761
M	143	V143V	gtG	gtT	1	1	AZ.1	0.000867
M	143	V143del	GTG	---	1	1	B.1	0.000009
M	143	V143V	gtG	gtC	1	1	B.1.1.135	0.004695
M	143	V143V	gtG	gtC	1	1	B.1.1.152	0.04
M	143	V143V	gtG	gtT	1	1	B.1.1.161	0.003534
M	143	V143del	GTG	---	1	1	B.1.1.174	0.003378
M	143	V143V	gtG	gtT	1	1	B.1.1.189	0.001513
M	143	V143V	gtG	gtT	1	1	B.1.1.205	0.003717
M	143	V143del	GTG	---	1	1	B.1.1.221	0.010101
M	143	V143V	gtG	gtT	1	1	B.1.1.25	0.000569
M	143	V143V	gtG	gtC	1	1	B.1.1.265	0.003155
M	143	V143V	gtG	gtT	1	1	B.1.1.288	0.001916
M	143	V143V	gtG	gtC	1	1	B.1.1.305	0.003861
M	143	V143V	gtG	gtT	1	1	B.1.1.307	0.002532
M	143	V143V	gtG	gtT	1	1	B.1.1.311	0.000358
M	143	V143V	gtG	gtC	1	1	B.1.1.315	0.008475
M	143	V143V	gtG	gtT	1	1	B.1.1.317	0.000412
M	143	V143M	Gtg	Atg	1	1	B.1.1.318	0.000302
M	143	V143V	gtG	gtT	1	1	B.1.1.337	0.003597
M	143	V143V	gtG	gtT	1	1	B.1.1.344	0.010753
M	143	V143V	gtG	gtA	1	1	B.1.1.349	0.010309
M	143	V143V	gtG	gtC	1	1	B.1.1.39	0.00051
M	143	V143V	gtG	gtT	1	1	B.1.1.416	0.000905
M	143	V143del	GTG	---	1	1	B.1.1.420	0.001006
M	143	V143V	gtG	gtT	1	1	B.1.1.432	0.001266
M	143	V143V	gtG	gtT	1	1	B.1.1.448	0.002033
M	143	V143V	gtG	gtT	1	1	B.1.1.487	0.005587
M	143	V143V	gtG	gtT	1	1	B.1.1.57	0.011494
M	143	V143V	gtG	gtC	1	1	B.1.1.63	0.000386
M	143	V143V	gtG	gtT	1	1	B.1.1.67	0.004566
M	143	V143E	gTg	gAg	1	1	B.1.1.7	0.000001
M	143	V143I	GtG	AtA	1	1	B.1.1.7	0.000001
M	143	V143G	gTg	gGg	1	1	B.1.1.7	0.000001
M	143	V143V	gtG	gtT	1	1	B.1.110.3	0.000718
M	143	V143V	gtG	gtT	1	1	B.1.139	0.000733
M	143	V143L	Gtg	Ttg	1	1	B.1.160.12	0.00641
M	143	V143V	gtG	gtT	1	1	B.1.160.16	0.000929
M	143	V143L	Gtg	Ttg	1	1	B.1.160.26	0.002421
M	143	V143V	gtG	gtC	1	1	B.1.160.32	0.004292
M	143	V143A	gTg	gCg	1	1	B.1.177	0.000013
M	143	V143V	gtG	gtT	1	1	B.1.177.17	0.000821
M	143	V143F	GtG	TtC	1	1	B.1.177.21	0.000076
M	143	V143V	gtG	gtT	1	1	B.1.177.31	0.011494
M	143	V143V	gtG	gtT	1	1	B.1.177.32	0.00135
M	143	V143V	gtG	gtC	1	1	B.1.177.33	0.001645
M	143	V143del	GTG	---	1	1	B.1.177.35	0.000691
M	143	V143V	gtG	gtT	1	1	B.1.177.40	0.005155
M	143	V143V	gtG	gtT	1	1	B.1.177.5	0.001242
M	143	V143V	gtG	gtT	1	1	B.1.177.60	0.000218
M	143	V143V	gtG	gtT	1	1	B.1.177.65	0.000665
M	143	V143L	Gtg	Ttg	1	1	B.1.177.69	0.001484
M	143	V143V	gtG	gtT	1	1	B.1.177.7	0.000165
M	143	V143V	gtG	gtA	1	1	B.1.177.80	0.001912
M	143	V143V	gtG	gtT	1	1	B.1.177.86	0.000183
M	143	V143V	gtG	gtT	1	1	B.1.203	0.0625
M	143	V143V	gtG	gtT	1	1	B.1.214.1	0.02
M	143	V143V	gtG	gtT	1	1	B.1.22	0.001318
M	143	V143V	gtG	gtT	1	1	B.1.223	0.002778
M	143	V143V	gtG	gtT	1	1	B.1.248	0.029412
M	143	V143del	GTG	---	1	1	B.1.258.11	0.000396
M	143	V143V	gtG	gtT	1	1	B.1.258.14	0.00098
M	143	V143V	gtG	gtT	1	1	B.1.258.23	0.02381
M	143	V143V	gtG	gtC	1	1	B.1.258.3	0.001675
M	143	V143V	gtG	gtT	1	1	B.1.301	0.005917
M	143	V143V	gtG	gtT	1	1	B.1.320	0.001245
M	143	V143V	gtG	gtC	1	1	B.1.329	0.000608
M	143	V143del1	Gtg	-tg	1	1	B.1.329	0.000608
M	143	V143del	GTG	---	1	1	B.1.351	0.00003
M	143	V143V	gtG	gtT	1	1	B.1.351.3	0.000876
M	143	V143V	gtG	gtC	1	1	B.1.351.5	0.0006
M	143	V143V	gtG	gtC	1	1	B.1.36.10	0.004785
M	143	V143V	gtG	gtT	1	1	B.1.36.16	0.001425
M	143	V143V	gtG	gtT	1	1	B.1.36.22	0.001208
M	143	V143V	gtG	gtT	1	1	B.1.366	0.004878
M	143	V143V	gtG	gtT	1	1	B.1.367	0.000792
M	143	V143V	gtG	gtT	1	1	B.1.370	0.008
M	143	V143V	gtG	gtT	1	1	B.1.380	0.006623
M	143	V143V	gtG	gtT	1	1	B.1.389	0.001002
M	143	V143V	gtG	gtT	1	1	B.1.400	0.000429
M	143	V143V	gtG	gtC	1	1	B.1.405	0.012346
M	143	V143L	Gtg	Ttg	1	1	B.1.416.1	0.001563
M	143	V143V	gtG	gtT	1	1	B.1.422	0.000812
M	143	V143del	GTG	---	1	1	B.1.427	0.00005
M	143	V143V	gtG	gtT	1	1	B.1.428	0.00102
M	143	V143L	Gtg	Ttg	1	1	B.1.443	0.004673
M	143	V143V	gtG	gtT	1	1	B.1.453	0.003236
M	143	V143V	gtG	gtC	1	1	B.1.456	0.003268
M	143	V143V	gtG	gtT	1	1	B.1.459	0.004082
M	143	V143V	gtG	gtC	1	1	B.1.460	0.017857
M	143	V143V	gtG	gtT	1	1	B.1.465	0.003802
M	143	V143V	gtG	gtT	1	1	B.1.495	0.009091
M	143	V143V	gtG	gtT	1	1	B.1.497	0.000315
M	143	V143V	gtG	gtA	1	1	B.1.498	0.020408
M	143	V143V	gtG	gtC	1	1	B.1.499	0.00105
M	143	V143V	gtG	gtT	1	1	B.1.503	0.002488
M	143	V143V	gtG	gtT	1	1	B.1.527	0.003704
M	143	V143V	gtG	gtC	1	1	B.1.541	0.004425
M	143	V143V	gtG	gtT	1	1	B.1.551	0.00129
M	143	V143V	gtG	gtT	1	1	B.1.558	0.004566
M	143	V143V	gtG	gtT	1	1	B.1.564	0.000426
M	143	V143V	gtG	gtT	1	1	B.1.571	0.009709
M	143	V143V	gtG	gtT	1	1	B.1.576	0.000907
M	143	V143del	GTG	---	1	1	B.1.582	0.000491
M	143	V143V	gtG	gtC	1	1	B.1.585	0.027778
M	143	V143V	gtG	gtT	1	1	B.1.588	0.00091
M	143	V143del1	gtG	gt-	1	1	B.1.595	0.000261
M	143	V143L	Gtg	Ttg	1	1	B.1.596	0.000087
M	143	V143V	gtG	gtT	1	1	B.1.605	0.005952
M	143	V143E	gTg	gAg	1	1	B.1.617.2	0.000004
M	143	V143del2	gTG	g--	1	1	B.1.617.2	0.000004
M	143	V143V	gtG	gtT	1	1	B.1.617.3	0.002985
M	143	V143V	gtG	gtT	1	1	B.1.627	0.00202
M	143	V143del1	Gtg	-tg	1	1	B.1.628	0.000352
M	143	V143V	gtG	gtT	1	1	B.1.633	0.041667
M	143	V143V	gtG	gtT	1	1	B.1.84	0.020833
M	143	V143V	gtG	gtT	1	1	B.1.9.5	0.005682
M	143	V143V	gtG	gtA	1	1	C.11	0.010638
M	143	V143V	gtG	gtC	1	1	C.26	0.007353
M	143	V143V	gtG	gtT	1	1	C.30	0.001727
M	143	V143V	gtG	gtT	1	1	C.33	0.058824
M	143	V143V	gtG	gtT	1	1	C.35	0.000774
M	143	V143V	gtG	gtC	1	1	C.37.1	0.002618
M	143	V143V	gtG	gtT	1	1	C.39	0.018868
M	143	V143V	gtG	gtC	1	1	N.4	0.004255
M	143	V143V	gtG	gtC	1	1	N.5	0.001767
M	143	V143V	gtG	gtT	1	1	N.8	0.03125
M	143	V143L	Gtg	Ttg	1	1	P.1	0.000016
M	143	V143V	gtG	gtC	1	1	P.1.10	0.000269
M	143	V143V	gtG	gtT	1	1	P.1.12	0.000484
M	143	V143V	gtG	gtC	1	1	P.1.16	0.000374
M	143	V143L	Gtg	Ttg	1	1	P.1.17	0.000162
M	143	V143V	gtG	gtC	1	1	Q.1	0.000126
M	143	V143V	gtG	gtT	1	1	Z.1	0.00289

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.