CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = M : CodonNum = 135

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
M135E135EsyngaAgaG78437843126925-26927
M135E135deldelGAA---9494126925-26927
M135E135DnonsyngaAgaT51420.82352926925-26927
M135E135DnonsyngaAgaC5190.17647126925-26927
M135E135KnonsynGaaAaa37360.97297326925-26927
M135E135KnonsynGaAAaG3710.02702726925-26927
M135E135VnonsyngAagTa3434126925-26927
M135E135GnonsyngAagGa2525126925-26927
M135E135AnonsyngAagCa2323126925-26927
M135E135del1delgAag-a1590.626925-26927
M135E135del1delGaa-aa1530.226925-26927
M135E135del1delgaAga-1520.13333326925-26927
M135E135del1delGaAAa-1510.066666726925-26927
M135E135XnonsynGaaTaa1212126925-26927
M135E135QnonsynGaaCaa44126925-26927
M135E135LnonsynGAATTG11126925-26927

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
M135E135EgaAgaG78437843All0.0015
M135E135EgaAgaG19621962B.1.1.70.001756
M135E135EgaAgaG881881AY.260.024941
M135E135EgaAgaG871871AY.40.001356
M135E135EgaAgaG833833B.1.1.2070.984634
M135E135EgaAgaG818818B.1.10.014839
M135E135EgaAgaG280280L.30.992908
M135E135EgaAgaG216216B.1.617.20.000813
M135E135EgaAgaG189189AY.30.00188
M135E135EgaAgaG158158B.10.001447
M135E135EgaAgaG141141AY.430.000625
M135E135EgaAgaG131131B.1.1600.004086
M135E135delGAA---9494All0.000018
M135E135EgaAgaG8686AY.440.000523
M135E135delGAA---7777B.1.177.210.005888
M135E135EgaAgaG6969AY.1030.000428
M135E135EgaAgaG6767P.10.001056
M135E135DgaAgaT4251All0.000008
M135E135DgaAgaC951All0.000002
M135E135EgaAgaG4949B.1.20.000431
M135E135EgaAgaG4848AY.250.000289
M135E135EgaAgaG4747AY.420.001891
M135E135EgaAgaG4545B.1.3510.001338
M135E135EgaAgaG4242AY.690.00784
M135E135EgaAgaG4040AY.1020.001061
M135E135EgaAgaG3939B.1.6370.00285
M135E135EgaAgaG3838AY.50.000785
M135E135KGaaAaa3637All0.000007
M135E135KGaAAaG137All0
M135E135VgAagTa3434All0.000007
M135E135GgAagGa2525All0.000005
M135E135AgAagCa2323All0.000004
M135E135EgaAgaG2323AY.390.000568
M135E135EgaAgaG2323AY.940.010181
M135E135EgaAgaG2121B.1.1.4190.155556
M135E135EgaAgaG1818AY.160.006834
M135E135EgaAgaG1818AY.200.0007
M135E135EgaAgaG1818AY.60.00074
M135E135EgaAgaG1818B.1.1.5190.000715
M135E135KGaaAaa1818B.1.177.210.001376
M135E135EgaAgaG1818C.36.30.01021
M135E135EgaAgaG1717AY.570.011155
M135E135EgaAgaG1616P.20.002986
M135E135del1gAag-a915All0.000002
M135E135del1Gaa-aa315All0.000001
M135E135del1gaAga-215All0
M135E135del1GaAAa-115All0
M135E135DgaAgaT1515B.1.5260.000353
M135E135EgaAgaG1414AY.290.000221
M135E135EgaAgaG1414AY.4.20.000304
M135E135EgaAgaG1414B.1.1.1890.02118
M135E135EgaAgaG1313AY.1200.000483
M135E135EgaAgaG1313B.1.5260.000306
M135E135XGaaTaa1212All0.000002
M135E135AgAagCa1111AY.30.000109
M135E135EgaAgaG1111AY.330.000735
M135E135EgaAgaG1111AY.9.10.000921
M135E135EgaAgaG1111B.1.1770.000145
M135E135EgaAgaG1111C.40.11
M135E135EgaAgaG1010AY.1180.000626
M135E135KGaaAaa1010B.1.1.70.000009
M135E135EgaAgaG1010B.1.4270.000505
M135E135EgaAgaG1010B.1.4530.032362
M135E135EgaAgaG1010B.1.6310.03367
M135E135EgaAgaG1010R.10.0009
M135E135EgaAgaG99AY.1210.001218
M135E135EgaAgaG99AY.270.000582
M135E135EgaAgaG99AY.610.000943
M135E135delGAA---99B.1.1.70.000008
M135E135DgaAgaT79B.1.1.70.000006
M135E135DgaAgaC29B.1.1.70.000002
M135E135EgaAgaG99B.1.6210.000797
M135E135EgaAgaG88AY.1000.000368
M135E135EgaAgaG88AY.1110.001465
M135E135EgaAgaG88AY.1130.001139
M135E135EgaAgaG88AY.1190.000282
M135E135EgaAgaG88B.1.1.2700.082474
M135E135EgaAgaG88P.1.160.002993
M135E135EgaAgaG77AY.230.000488
M135E135EgaAgaG77AY.470.000218
M135E135EgaAgaG77AY.540.000667
M135E135EgaAgaG77AY.980.000553
M135E135EgaAgaG77B.1.2340.000924
M135E135EgaAgaG77B.1.4090.005469
M135E135GgAagGa77B.1.4290.000165
M135E135EgaAgaG66AY.1170.000507
M135E135EgaAgaG66AY.140.000528
M135E135EgaAgaG66AY.590.003178
M135E135VgAagTa66B.1.1.70.000005
M135E135EgaAgaG66B.1.177.810.001136
M135E135VgAagTa66B.1.20.000053
M135E135EgaAgaG66B.1.2430.000418
M135E135EgaAgaG66P.1.140.000287
M135E135EgaAgaG66Q.10.000758
M135E135DgaAgaT55AY.1160.001434
M135E135VgAagTa55AY.30.00005
M135E135EgaAgaG55AY.46.20.003177
M135E135EgaAgaG55B.1.2210.000355
M135E135VgAagTa55B.1.5260.000118
M135E135EgaAgaG55B.1.5670.016667
M135E135EgaAgaG55D.20.000375
M135E135QGaaCaa44All0.000001
M135E135EgaAgaG44AY.4.2.10.000596
M135E135EgaAgaG44AY.460.000416
M135E135EgaAgaG44AY.75.10.000721
M135E135EgaAgaG44AY.90.00027
M135E135EgaAgaG44AY.98.10.000194
M135E135EgaAgaG44B0.000511
M135E135EgaAgaG44B.1.1890.017167
M135E135EgaAgaG44B.1.258.170.000416
M135E135EgaAgaG44B.1.258.240.043011
M135E135EgaAgaG44B.1.36.10.004561
M135E135EgaAgaG44B.1.4290.000094
M135E135EgaAgaG44B.1.5250.000453
M135E135EgaAgaG44B.1.5950.001044
M135E135EgaAgaG44B.1.5960.000349
M135E135EgaAgaG44B.1.617.30.01194
M135E135EgaAgaG44Q.80.00066
M135E135EgaAgaG33AD.20.000657
M135E135AgAagCa33AY.1020.00008
M135E135EgaAgaG33AY.300.001187
M135E135GgAagGa33AY.40.000005
M135E135DgaAgaT33AY.430.000013
M135E135EgaAgaG33AY.710.001425
M135E135EgaAgaG33AY.99.20.000276
M135E135EgaAgaG33B.1.1.2000.022388
M135E135EgaAgaG33B.1.1.3060.001315
M135E135XGaaTaa33B.1.1.70.000003
M135E135AgAagCa33B.1.1.70.000003
M135E135del1gaAga-23B.1.177.210.000153
M135E135del1GaAAa-13B.1.177.210.000076
M135E135EgaAgaG33B.1.177.40.000633
M135E135EgaAgaG33B.1.177.820.001432
M135E135EgaAgaG33B.1.596.10.028037
M135E135DgaAgaT23B.1.617.20.000008
M135E135DgaAgaC13B.1.617.20.000004
M135E135EgaAgaG33C.10.007177
M135E135EgaAgaG33C.350.002322
M135E135EgaAgaG33C.370.000348
M135E135EgaAgaG33P.1.150.000697
M135E135EgaAgaG22A.50.003846
M135E135VgAagTa22AY.1030.000012
M135E135VgAagTa22AY.1110.000366
M135E135EgaAgaG22AY.16.10.00094
M135E135VgAagTa22AY.270.000129
M135E135EgaAgaG22AY.350.000466
M135E135EgaAgaG22AY.39.10.000079
M135E135VgAagTa22AY.40.000003
M135E135EgaAgaG22AY.450.000243
M135E135EgaAgaG22AY.46.40.000329
M135E135AgAagCa22AY.60.000082
M135E135EgaAgaG22AY.70.000392
M135E135EgaAgaG22AY.750.000112
M135E135EgaAgaG22AY.80.001212
M135E135EgaAgaG22AY.840.000875
M135E135EgaAgaG22AY.910.001461
M135E135EgaAgaG22AY.950.001522
M135E135XGaaTaa22B.10.000018
M135E135del1gAag-a12B.10.000009
M135E135del1Gaa-aa12B.10.000009
M135E135EgaAgaG22B.1.1.10.000653
M135E135EgaAgaG22B.1.1.1760.000879
M135E135EgaAgaG22B.1.1.250.001137
M135E135EgaAgaG22B.1.1.280.000622
M135E135EgaAgaG22B.1.1.3360.033333
M135E135EgaAgaG22B.1.1.3480.001592
M135E135EgaAgaG22B.1.1.3720.001377
M135E135EgaAgaG22B.1.1.4090.005666
M135E135EgaAgaG22B.1.1.4480.004065
M135E135EgaAgaG22B.1.1.4640.002946
M135E135DgaAgaT22B.1.1.5190.000079
M135E135GgAagGa22B.1.1.70.000002
M135E135EgaAgaG22B.1.1.700.000682
M135E135del1gAag-a12B.1.20.000009
M135E135del1Gaa-aa12B.1.20.000009
M135E135EgaAgaG22B.1.2100.004264
M135E135GgAagGa22B.1.2430.000139
M135E135EgaAgaG22B.1.4590.008163
M135E135EgaAgaG22B.1.466.20.000782
M135E135EgaAgaG22B.1.5050.008772
M135E135del1gAag-a22B.1.617.20.000008
M135E135EgaAgaG22B.460.041667
M135E135GgAagGa22P.10.000032
M135E135DgaAgaT22P.1.140.000096
M135E135GgAagGa22P.20.000373
M135E135EgaAgaG11A0.000387
M135E135EgaAgaG11A.10.000282
M135E135EgaAgaG11A.30.002096
M135E135LGAATTG11All0
M135E135EgaAgaG11AU.20.002421
M135E135EgaAgaG11AY.1010.00049
M135E135AgAagCa11AY.1030.000006
M135E135EgaAgaG11AY.1040.001984
M135E135EgaAgaG11AY.1050.000643
M135E135EgaAgaG11AY.1100.000113
M135E135EgaAgaG11AY.1140.000231
M135E135EgaAgaG11AY.1160.000287
M135E135AgAagCa11AY.1190.000035
M135E135EgaAgaG11AY.120.000316
M135E135VgAagTa11AY.120.000316
M135E135XGaaTaa11AY.120.10.000321
M135E135AgAagCa11AY.200.000039
M135E135DgaAgaC11AY.250.000006
M135E135AgAagCa11AY.250.000006
M135E135KGaaAaa11AY.250.000006
M135E135DgaAgaT11AY.260.000028
M135E135delGAA---11AY.260.000028
M135E135DgaAgaC11AY.290.000016
M135E135EgaAgaG11AY.3.10.000085
M135E135DgaAgaT11AY.330.000067
M135E135del1gAag-a11AY.330.000067
M135E135EgaAgaG11AY.340.000097
M135E135DgaAgaC11AY.40.000002
M135E135GgAagGa11AY.4.20.000022
M135E135EgaAgaG11AY.4.30.000842
M135E135EgaAgaG11AY.4.50.000107
M135E135EgaAgaG11AY.410.000294
M135E135GgAagGa11AY.430.000004
M135E135XGaaTaa11AY.430.000004
M135E135delGAA---11AY.440.000006
M135E135QGaaCaa11AY.440.000006
M135E135EgaAgaG11AY.46.60.000072
M135E135GgAagGa11AY.470.000031
M135E135EgaAgaG11AY.520.000814
M135E135EgaAgaG11AY.530.000288
M135E135EgaAgaG11AY.550.000917
M135E135KGaAAaG11AY.600.000938
M135E135EgaAgaG11AY.640.000595
M135E135GgAagGa11AY.650.000533
M135E135EgaAgaG11AY.670.000464
M135E135EgaAgaG11AY.7.10.000113
M135E135EgaAgaG11AY.740.000116
M135E135VgAagTa11AY.90.000068
M135E135EgaAgaG11AY.9.20.000037
M135E135LGAATTG11AY.9.20.000037
M135E135EgaAgaG11AY.920.000287
M135E135EgaAgaG11AY.930.000273
M135E135XGaaTaa11B0.000128
M135E135DgaAgaC11B0.000128
M135E135delGAA---11B.10.000009
M135E135KGaaAaa11B.10.000009
M135E135QGaaCaa11B.10.000009
M135E135DgaAgaT11B.1.10.000018
M135E135KGaaAaa11B.1.10.000018
M135E135QGaaCaa11B.1.10.000018
M135E135delGAA---11B.1.1.1740.003378
M135E135DgaAgaT11B.1.1.2070.001182
M135E135delGAA---11B.1.1.2210.010101
M135E135EgaAgaG11B.1.1.2220.000204
M135E135KGaaAaa11B.1.1.2580.003257
M135E135EgaAgaG11B.1.1.2790.001121
M135E135EgaAgaG11B.1.1.2840.000107
M135E135QGaaCaa11B.1.1.2880.001916
M135E135EgaAgaG11B.1.1.3010.001179
M135E135EgaAgaG11B.1.1.3040.002809
M135E135EgaAgaG11B.1.1.3110.000358
M135E135EgaAgaG11B.1.1.3170.000412
M135E135EgaAgaG11B.1.1.3180.000302
M135E135EgaAgaG11B.1.1.3220.008772
M135E135EgaAgaG11B.1.1.3510.002793
M135E135EgaAgaG11B.1.1.370.000193
M135E135EgaAgaG11B.1.1.40.002976
M135E135EgaAgaG11B.1.1.4020.011111
M135E135EgaAgaG11B.1.1.4160.000905
M135E135delGAA---11B.1.1.4200.001006
M135E135EgaAgaG11B.1.1.4860.001577
M135E135KGaaAaa11B.1.1.5190.00004
M135E135EgaAgaG11B.1.1.5250.005464
M135E135del1Gaa-aa11B.1.1.70.000001
M135E135EgaAgaG11B.1.1030.019231
M135E135EgaAgaG11B.1.110.30.000718
M135E135EgaAgaG11B.1.1270.002198
M135E135EgaAgaG11B.1.1280.000635
M135E135DgaAgaT11B.1.177.120.000152
M135E135EgaAgaG11B.1.177.180.00116
M135E135EgaAgaG11B.1.177.210.000076
M135E135EgaAgaG11B.1.177.310.011494
M135E135KGaaAaa11B.1.177.440.000519
M135E135EgaAgaG11B.1.177.570.000281
M135E135VgAagTa11B.1.177.600.000218
M135E135EgaAgaG11B.1.177.600.000218
M135E135EgaAgaG11B.1.177.730.000566
M135E135XGaaTaa11B.1.20.000009
M135E135DgaAgaT11B.1.20.000009
M135E135KGaaAaa11B.1.20.000009
M135E135GgAagGa11B.1.20.000009
M135E135EgaAgaG11B.1.2060.000816
M135E135EgaAgaG11B.1.2120.016667
M135E135EgaAgaG11B.1.214.10.02
M135E135EgaAgaG11B.1.2150.009615
M135E135EgaAgaG11B.1.22.10.03125
M135E135del1gAag-a11B.1.2210.000071
M135E135GgAagGa11B.1.2340.000132
M135E135DgaAgaC11B.1.2390.001221
M135E135DgaAgaC11B.1.2430.00007
M135E135delGAA---11B.1.258.110.000396
M135E135EgaAgaG11B.1.2650.001271
M135E135EgaAgaG11B.1.2790.000514
M135E135EgaAgaG11B.1.2910.019231
M135E135EgaAgaG11B.1.3290.000608
M135E135EgaAgaG11B.1.360.000146
M135E135EgaAgaG11B.1.36.260.002857
M135E135EgaAgaG11B.1.36.290.000517
M135E135EgaAgaG11B.1.36.390.002217
M135E135EgaAgaG11B.1.36.70.004
M135E135EgaAgaG11B.1.3750.00082
M135E135EgaAgaG11B.1.3910.001127
M135E135del1gAag-a11B.1.3960.000706
M135E135EgaAgaG11B.1.4040.001302
M135E135EgaAgaG11B.1.4110.003704
M135E135EgaAgaG11B.1.4220.000812
M135E135delGAA---11B.1.4270.00005
M135E135VgAagTa11B.1.4290.000024
M135E135EgaAgaG11B.1.438.10.000107
M135E135EgaAgaG11B.1.4680.005714
M135E135EgaAgaG11B.1.4690.00361
M135E135EgaAgaG11B.1.4800.002488
M135E135EgaAgaG11B.1.4990.00105
M135E135EgaAgaG11B.1.5010.007353
M135E135EgaAgaG11B.1.5170.000427
M135E135EgaAgaG11B.1.5650.00081
M135E135EgaAgaG11B.1.5750.000303
M135E135del1gAag-a11B.1.5960.000087
M135E135EgaAgaG11B.1.6000.005848
M135E135EgaAgaG11B.1.617.10.000129
M135E135KGaaAaa11B.1.617.20.000004
M135E135XGaaTaa11B.1.617.20.000004
M135E135GgAagGa11B.1.617.20.000004
M135E135XGaaTaa11B.1.6230.000536
M135E135EgaAgaG11B.1.6280.000352
M135E135EgaAgaG11B.1.6360.006711
M135E135EgaAgaG11B.1.9.40.006135
M135E135EgaAgaG11B.110.005128
M135E135EgaAgaG11B.310.003731
M135E135EgaAgaG11B.550.00295
M135E135del1gAag-a11P.10.000016
M135E135EgaAgaG11P.1.170.000162
M135E135EgaAgaG11P.1.20.001156
M135E135EgaAgaG11P.1.70.000319
M135E135EgaAgaG11P.60.003145
M135E135XGaaTaa11Q.30.000145
M135E135EgaAgaG11Q.30.000145