CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = M : CodonNum = 129 & Codon = ctT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
M129L129LsynctGctT95658880.092838526907-26909

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
M129L129LctGctT8889565All0.00017
M129L129LctGctT403658AY.40.000062
M129L129LctGctT2441741B.1.1.70.000218
M129L129LctGctT53276B.1.617.20.0002
M129L129LctGctT20244AY.430.000089
M129L129LctGctT213213B.1.6180.858871
M129L129LctGctT10179AY.440.000061
M129L129LctGctT9174P.10.000142
M129L129LctGctT13162B.1.20.000114
M129L129LctGctT8124AY.250.000048
M129L129LctGctT15117AY.1030.000093
M129L129LctGctT8104B.1.1770.000105
M129L129LctGctT1192B.10.000101
M129L129LctGctT275B.1.5260.000047
M129L129LctGctT561B.1.10.000091
M129L129LctGctT550AY.1020.000133
M129L129LctGctT947B.1.1.5190.000357
M129L129LctGctT4144AY.1200.001524
M129L129LctGctT140B.1.1.2140.000055
M129L129LctGctT1033AY.390.000247
M129L129LctGctT931AY.200.00035
M129L129LctGctT430AY.290.000063
M129L129LctGctT1027AY.50.000206
M129L129LctGctT1024AY.260.000283
M129L129LctGctT224B.1.1600.000062
M129L129LctGctT323B.1.3510.000089
M129L129LctGctT118AY.420.00004
M129L129LctGctT1518AY.98.10.000726
M129L129LctGctT617B.1.1.2220.001224
M129L129LctGctT217B.1.2580.000133
M129L129LctGctT716B.1.2430.000487
M129L129LctGctT1515B.1.5820.00736
M129L129LctGctT113AY.1130.000142
M129L129LctGctT513AY.330.000334
M129L129LctGctT1113AY.450.001339
M129L129LctGctT313C.370.000348
M129L129LctGctT112AY.1000.000046
M129L129LctGctT212AY.470.000062
M129L129LctGctT211AY.60.000082
M129L129LctGctT710P.1.120.003388
M129L129LctGctT29AY.1110.000366
M129L129LctGctT49AY.610.000419
M129L129LctGctT19AY.7.10.000113
M129L129LctGctT28AY.1190.000071
M129L129LctGctT38AY.4.40.001227
M129L129LctGctT18Q.80.000165
M129L129LctGctT17AY.1170.000085
M129L129LctGctT37AY.90.000203
M129L129LctGctT25B0.000256
M129L129LctGctT15B.1.177.570.000281
M129L129LctGctT14AY.360.000148
M129L129LctGctT14AY.4.50.000107
M129L129LctGctT14AY.9.10.000084
M129L129LctGctT14AY.910.00073
M129L129LctGctT24B.1.1.250.001137
M129L129LctGctT13AY.4.2.10.000149
M129L129LctGctT23AY.70.000392
M129L129LctGctT13AY.99.20.000092
M129L129LctGctT23B.1.1.1980.002937
M129L129LctGctT33B.1.1690.044776
M129L129LctGctT23B.1.621.10.001012
M129L129LctGctT12A0.000387
M129L129LctGctT22AY.1100.000225
M129L129LctGctT12AY.1160.000287
M129L129LctGctT12AY.270.000065
M129L129LctGctT12AY.700.000209
M129L129LctGctT12B.1.177.210.000076
M129L129LctGctT11AY.520.000814
M129L129LctGctT11B.1.1.1180.010204
M129L129LctGctT11B.1.1150.021739
M129L129LctGctT11B.1.160.170.001701
M129L129LctGctT11B.1.2650.001271
M129L129LctGctT11B.1.3010.005917
M129L129LctGctT11B.1.36.360.000602
M129L129LctGctT11B.1.3910.001127
M129L129LctGctT11B.1.596.10.009346
M129L129LctGctT11B.1.6230.000536
M129L129LctGctT11P.1.40.000977

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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