CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = M : CodonNum = 129 & Codon = ctC

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
M129L129LsynctGctC95652570.026868826907-26909

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
M129L129LctGctC2579565All0.000049
M129L129LctGctC183658AY.40.000028
M129L129LctGctC511741B.1.1.70.000046
M129L129LctGctC5289AY.30.00005
M129L129LctGctC19276B.1.617.20.000072
M129L129LctGctC5244AY.430.000022
M129L129LctGctC7179AY.440.000043
M129L129LctGctC8174P.10.000126
M129L129LctGctC5162B.1.20.000044
M129L129LctGctC2124AY.250.000012
M129L129LctGctC8117AY.1030.00005
M129L129LctGctC592B.10.000046
M129L129LctGctC261B.1.10.000036
M129L129LctGctC352AY.39.10.000119
M129L129LctGctC247B.1.1.5190.000079
M129L129LctGctC2140B.1.1.2140.001165
M129L129LctGctC233AY.390.000049
M129L129LctGctC1430AY.290.000221
M129L129LctGctC530B.1.2340.00066
M129L129LctGctC227AY.50.000041
M129L129LctGctC126AY.9.20.000037
M129L129LctGctC226B.1.617.10.000258
M129L129LctGctC123B.1.3510.00003
M129L129LctGctC1617AY.1210.002165
M129L129LctGctC115B.1.5250.000113
M129L129LctGctC214AY.230.000139
M129L129LctGctC314D.20.000225
M129L129LctGctC113C.370.000116
M129L129LctGctC112AY.1000.000046
M129L129LctGctC112AY.470.000031
M129L129LctGctC110AY.350.000233
M129L129LctGctC29AY.1110.000366
M129L129LctGctC39AY.610.000314
M129L129LctGctC18AY.4.40.000409
M129L129LctGctC17AY.460.000104
M129L129LctGctC67AY.530.001725
M129L129LctGctC17AY.750.000056
M129L129LctGctC17AY.980.000079
M129L129LctGctC25AY.850.000854
M129L129LctGctC25B0.000256
M129L129LctGctC55B.1.1.3110.001791
M129L129LctGctC15B.1.36.290.000517
M129L129LctGctC15B.1.4990.00105
M129L129LctGctC14AY.840.000437
M129L129LctGctC24Q.10.000253
M129L129LctGctC13AY.4.2.10.000149
M129L129LctGctC22AY.16.10.00094
M129L129LctGctC22B.1.258.140.001961
M129L129LctGctC11AY.4.10.000737
M129L129LctGctC11AY.900.000684
M129L129LctGctC11B.1.1.2900.018182
M129L129LctGctC11B.1.1110.001175
M129L129LctGctC11B.1.1200.007692
M129L129LctGctC11B.1.258.30.001675
M129L129LctGctC11B.1.3360.002439
M129L129LctGctC11B.1.4530.003236
M129L129LctGctC11B.1.5770.000687

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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