CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = M : CodonNum = 129 & Codon = cAg

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
M129L129QnonsyncTgcAg134134126907-26909

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
M129L129QcTgcAg134134All0.000026
M129L129QcTgcAg8686AY.430.000381
M129L129QcTgcAg1616B.1.1.70.000014
M129L129QcTgcAg88AY.440.000049
M129L129QcTgcAg22AY.1030.000012
M129L129QcTgcAg22AY.140.000176
M129L129QcTgcAg22AY.750.000112
M129L129QcTgcAg22AY.840.000875
M129L129QcTgcAg11AY.120.10.000321
M129L129QcTgcAg11AY.200.000039
M129L129QcTgcAg11AY.40.000002
M129L129QcTgcAg11B.10.000009
M129L129QcTgcAg11B.1.10.000018
M129L129QcTgcAg11B.1.1.5190.00004
M129L129QcTgcAg11B.1.2430.00007
M129L129QcTgcAg11B.1.4270.00005
M129L129QcTgcAg11B.1.4290.000024
M129L129QcTgcAg11B.1.5760.000907
M129L129QcTgcAg11B.1.617.20.000004
M129L129QcTgcAg11B.1.9.40.006135
M129L129QcTgcAg11B.550.00295
M129L129QcTgcAg11P.10.000016
M129L129QcTgcAg11P.1.160.000374
M129L129QcTgcAg11Q.30.000145

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.