CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = M : CodonNum = 129 & Codon = Ttg

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
M129L129LsynCtgTtg956565880.68876126907-26909

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
M129L129LCtgTtg65889565All0.00126
M129L129LCtgTtg20653658AY.40.003214
M129L129LCtgTtg14171741B.1.1.70.001269
M129L129LCtgTtg275289AY.30.002735
M129L129LCtgTtg175276B.1.617.20.000659
M129L129LCtgTtg102244AY.430.000452
M129L129LCtgTtg161179AY.440.00098
M129L129LCtgTtg156174P.10.002458
M129L129LCtgTtg142162B.1.20.00125
M129L129LCtgTtg110124AY.250.000662
M129L129LCtgTtg94117AY.1030.000584
M129L129LCtgTtg104104AY.410.03057
M129L129LCtgTtg95104B.1.1770.001251
M129L129LCtgTtg7392B.10.000669
M129L129LCtgTtg7784B.1.4290.001812
M129L129LCtgTtg8080AY.160.030372
M129L129LCtgTtg7476AY.1180.004636
M129L129LCtgTtg6375B.1.5260.001481
M129L129LCtgTtg5361B.1.10.000961
M129L129LCtgTtg4852AY.39.10.001901
M129L129LCtgTtg4550AY.1020.001193
M129L129LCtgTtg4949AY.110.065596
M129L129LCtgTtg3547B.1.1.5190.00139
M129L129LCtgTtg344AY.1200.000112
M129L129LCtgTtg4141B.1.4270.00207
M129L129LCtgTtg1740B.1.1.2140.000943
M129L129LCtgTtg2033AY.390.000494
M129L129LCtgTtg2231AY.200.000855
M129L129LCtgTtg3131B.1.438.10.003325
M129L129LCtgTtg1030AY.290.000158
M129L129LCtgTtg2530B.1.2340.003299
M129L129LCtgTtg1527AY.50.00031
M129L129LCtgTtg2526AY.9.20.000918
M129L129LCtgTtg226B.1.617.10.000258
M129L129LCtgTtg625AY.4.20.00013
M129L129LCtgTtg1324AY.260.000368
M129L129LCtgTtg2124B.1.1600.000655
M129L129LCtgTtg2424B.1.177.120.003641
M129L129LCtgTtg2424P.1.140.001147
M129L129LCtgTtg1923B.1.3510.000565
M129L129LCtgTtg1919B.1.6360.127517
M129L129LCtgTtg1618AY.420.000644
M129L129LCtgTtg318AY.98.10.000145
M129L129LCtgTtg117AY.1210.000135
M129L129LCtgTtg1717AY.3.10.001449
M129L129LCtgTtg1117B.1.1.2220.002244
M129L129LCtgTtg1417B.1.2580.000932
M129L129LCtgTtg1616AY.7.20.008949
M129L129LCtgTtg1616B.1.1.2190.08
M129L129LCtgTtg1616B.1.1.750.170213
M129L129LCtgTtg1616B.1.177.820.007637
M129L129LCtgTtg916B.1.2430.000626
M129L129LCtgTtg1415B.1.5250.001584
M129L129LCtgTtg1014AY.230.000697
M129L129LCtgTtg1414B.1.1.3480.011146
M129L129LCtgTtg1114D.20.000825
M129L129LCtgTtg1213AY.1130.001709
M129L129LCtgTtg813AY.330.000534
M129L129LCtgTtg213AY.450.000243
M129L129LCtgTtg1313B.1.177.160.008638
M129L129LCtgTtg513C.370.00058
M129L129LCtgTtg1212A.290.06383
M129L129LCtgTtg512AY.1000.00023
M129L129LCtgTtg1212AY.1050.007717
M129L129LCtgTtg912AY.470.00028
M129L129LCtgTtg1212P.1.10.003812
M129L129LCtgTtg911AY.60.00037
M129L129LCtgTtg1111B.1.36.180.004622
M129L129LCtgTtg1111B.1.6280.003876
M129L129LCtgTtg1111B.1.6370.000804
M129L129LCtgTtg910AY.350.002097
M129L129LCtgTtg1010AY.46.60.000722
M129L129LCtgTtg1010B.1.1.2860.028986
M129L129LCtgTtg1010B.1.3110.002746
M129L129LCtgTtg210P.1.120.000968
M129L129LCtgTtg59AY.1110.000916
M129L129LCtgTtg29AY.610.00021
M129L129LCtgTtg89AY.7.10.000902
M129L129LCtgTtg99B.1.1.3020.018672
M129L129LCtgTtg99B.1.5960.000784
M129L129LCtgTtg68AY.1190.000212
M129L129LCtgTtg48AY.4.40.001637
M129L129LCtgTtg88B.1.2210.000568
M129L129LCtgTtg78Q.80.001154
M129L129LCtgTtg67AY.1170.000507
M129L129LCtgTtg67AY.460.000624
M129L129LCtgTtg77AY.590.003708
M129L129LCtgTtg67AY.750.000336
M129L129LCtgTtg27AY.90.000135
M129L129LCtgTtg67AY.980.000474
M129L129LCtgTtg56AY.740.000578
M129L129LCtgTtg66B.1.3990.011605
M129L129LCtgTtg66P.1.150.001394
M129L129LCtgTtg55AY.120.00158
M129L129LCtgTtg35AY.850.001282
M129L129LCtgTtg15B0.000128
M129L129LCtgTtg55B.1.1.280.001556
M129L129LCtgTtg45B.1.177.570.001124
M129L129LCtgTtg55B.1.177.770.003631
M129L129LCtgTtg55B.1.177.860.000917
M129L129LCtgTtg55B.1.360.00073
M129L129LCtgTtg45B.1.36.290.002069
M129L129LCtgTtg45B.1.4990.004202
M129L129LCtgTtg45B.1.6210.000354
M129L129LCtgTtg55C.160.005302
M129L129LCtgTtg55R.10.00045
M129L129LCtgTtg44A.2.50.001996
M129L129LCtgTtg44AY.1090.002959
M129L129LCtgTtg44AY.130.000644
M129L129LCtgTtg34AY.360.000445
M129L129LCtgTtg24AY.4.50.000215
M129L129LCtgTtg34AY.840.001312
M129L129LCtgTtg34AY.9.10.000251
M129L129LCtgTtg34AY.910.002191
M129L129LCtgTtg24B.1.1.250.001137
M129L129LCtgTtg44B.1.1.3060.001754
M129L129LCtgTtg44B.1.1.330.001684
M129L129LCtgTtg44B.1.177.810.000757
M129L129LCtgTtg44B.1.4000.001716
M129L129LCtgTtg44B.1.5090.003463
M129L129LCtgTtg24Q.10.000253
M129L129LCtgTtg33AY.1060.001005
M129L129LCtgTtg33AY.1080.003308
M129L129LCtgTtg33AY.140.000264
M129L129LCtgTtg13AY.4.2.10.000149
M129L129LCtgTtg33AY.5.40.00083
M129L129LCtgTtg33AY.560.004815
M129L129LCtgTtg33AY.600.002814
M129L129LCtgTtg33AY.620.001307
M129L129LCtgTtg33AY.75.10.000541
M129L129LCtgTtg23AY.99.20.000184
M129L129LCtgTtg33B.1.1.1740.010135
M129L129LCtgTtg13B.1.1.1980.001468
M129L129LCtgTtg33B.1.1.3170.001235
M129L129LCtgTtg33B.1.1.4160.002715
M129L129LCtgTtg33B.1.177.320.004049
M129L129LCtgTtg33B.1.2360.00616
M129L129LCtgTtg33B.1.258.40.010345
M129L129LCtgTtg33B.1.5300.021429
M129L129LCtgTtg33B.1.5750.00091
M129L129LCtgTtg13B.1.621.10.000506
M129L129LCtgTtg33P.1.170.000485
M129L129LCtgTtg12A0.000387
M129L129LCtgTtg12AY.270.000065
M129L129LCtgTtg22AY.300.000791
M129L129LCtgTtg22AY.320.001065
M129L129LCtgTtg22AY.46.40.000329
M129L129LCtgTtg22AY.46.50.000397
M129L129LCtgTtg22AY.540.000191
M129L129LCtgTtg12AY.700.000209
M129L129LCtgTtg22AY.760.009662
M129L129LCtgTtg22B.1.1.1700.002494
M129L129LCtgTtg22B.1.1.2070.002364
M129L129LCtgTtg22B.1.1.2160.001781
M129L129LCtgTtg22B.1.1.3160.00185
M129L129LCtgTtg22B.1.1.3180.000604
M129L129LCtgTtg22B.1.1.370.000386
M129L129LCtgTtg22B.1.1.4260.071429
M129L129LCtgTtg22B.1.1260.002551
M129L129LCtgTtg22B.1.130.004751
M129L129LCtgTtg22B.1.1490.006849
M129L129LCtgTtg22B.1.160.290.008439
M129L129LCtgTtg12B.1.177.210.000076
M129L129LCtgTtg22B.1.177.440.001038
M129L129LCtgTtg22B.1.2400.000431
M129L129LCtgTtg22B.1.2980.004228
M129L129LCtgTtg22B.1.36.10.002281
M129L129LCtgTtg22B.1.36.80.002
M129L129LCtgTtg22B.1.5760.001813
M129L129LCtgTtg22C.350.001548
M129L129LCtgTtg22C.37.10.005236
M129L129LCtgTtg11A.10.000282
M129L129LCtgTtg11A.2.40.003367
M129L129LCtgTtg11A.2.5.30.010309
M129L129LCtgTtg11AD.10.004115
M129L129LCtgTtg11AD.20.000219
M129L129LCtgTtg11AW.10.003049
M129L129LCtgTtg11AY.1040.001984
M129L129LCtgTtg11AY.120.10.000321
M129L129LCtgTtg11AY.120.2.10.000498
M129L129LCtgTtg11AY.180.010101
M129L129LCtgTtg11AY.23.10.000417
M129L129LCtgTtg11AY.340.000097
M129L129LCtgTtg11AY.400.000964
M129L129LCtgTtg11AY.490.003195
M129L129LCtgTtg11AY.640.000595
M129L129LCtgTtg11AY.680.000274
M129L129LCtgTtg11AY.710.000475
M129L129LCtgTtg11AY.770.001127
M129L129LCtgTtg11AY.9.2.10.001976
M129L129LCtgTtg11AY.920.000287
M129L129LCtgTtg11AY.930.000273
M129L129LCtgTtg11AZ.20.000821
M129L129LCtgTtg11B.1.1.120.007463
M129L129LCtgTtg11B.1.1.1570.000913
M129L129LCtgTtg11B.1.1.1610.003534
M129L129LCtgTtg11B.1.1.1630.007634
M129L129LCtgTtg11B.1.1.1760.000439
M129L129LCtgTtg11B.1.1.1890.001513
M129L129LCtgTtg11B.1.1.1920.002309
M129L129LCtgTtg11B.1.1.2250.007194
M129L129LCtgTtg11B.1.1.2360.006897
M129L129LCtgTtg11B.1.1.2630.001558
M129L129LCtgTtg11B.1.1.2650.003155
M129L129LCtgTtg11B.1.1.2730.006757
M129L129LCtgTtg11B.1.1.2980.000862
M129L129LCtgTtg11B.1.1.3090.005848
M129L129LCtgTtg11B.1.1.3690.000446
M129L129LCtgTtg11B.1.1.4000.05
M129L129LCtgTtg11B.1.1.4340.000349
M129L129LCtgTtg11B.1.1.5210.005348
M129L129LCtgTtg11B.1.1.5260.003546
M129L129LCtgTtg11B.1.1.610.008772
M129L129LCtgTtg11B.1.1.630.000386
M129L129LCtgTtg11B.1.1.700.000341
M129L129LCtgTtg11B.1.1.830.00271
M129L129LCtgTtg11B.1.177.100.000878
M129L129LCtgTtg11B.1.177.30.007634
M129L129LCtgTtg11B.1.177.310.011494
M129L129LCtgTtg11B.1.177.40.000211
M129L129LCtgTtg11B.1.177.420.000894
M129L129LCtgTtg11B.1.177.460.000918
M129L129LCtgTtg11B.1.177.600.000218
M129L129LCtgTtg11B.1.177.830.001481
M129L129LCtgTtg11B.1.1890.004292
M129L129LCtgTtg11B.1.2120.016667
M129L129LCtgTtg11B.1.258.170.000104
M129L129LCtgTtg11B.1.258.70.001912
M129L129LCtgTtg11B.1.30.002618
M129L129LCtgTtg11B.1.3240.001605
M129L129LCtgTtg11B.1.3670.000792
M129L129LCtgTtg11B.1.3750.00082
M129L129LCtgTtg11B.1.4040.001302
M129L129LCtgTtg11B.1.4090.000781
M129L129LCtgTtg11B.1.4260.001009
M129L129LCtgTtg11B.1.4360.001029
M129L129LCtgTtg11B.1.4920.007042
M129L129LCtgTtg11B.1.5270.003704
M129L129LCtgTtg11B.1.5440.006024
M129L129LCtgTtg11B.1.5460.003704
M129L129LCtgTtg11B.1.5640.000426
M129L129LCtgTtg11B.1.5740.002151
M129L129LCtgTtg11B.1.575.10.002439
M129L129LCtgTtg11B.1.5870.001898
M129L129LCtgTtg11B.1.5950.000261
M129L129LCtgTtg11B.1.6090.000479
M129L129LCtgTtg11B.180.043478
M129L129LCtgTtg11B.30.000831
M129L129LCtgTtg11P.20.000187

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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