CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = M : CodonNum = 129

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
M129L129LsynCtgTtg956565880.68876126907-26909
M129L129LsynctGctA956518270.19100926907-26909
M129L129LsynctGctT95658880.092838526907-26909
M129L129LsynctGctC95652570.026868826907-26909
M129L129LsynCtGTtA956550.00052273926907-26909
M129L129MnonsynCtgAtg204204126907-26909
M129L129VnonsynCtgGtg154970.6298726907-26909
M129L129VnonsynCtGGtT154440.28571426907-26909
M129L129VnonsynCtGGtC15480.051948126907-26909
M129L129VnonsynCtGGtA15450.032467526907-26909
M129L129QnonsyncTgcAg134134126907-26909
M129L129PnonsyncTgcCg100770.7726907-26909
M129L129PnonsyncTGcCT100180.1826907-26909
M129L129PnonsyncTGcCA10030.0326907-26909
M129L129PnonsyncTGcCC10020.0226907-26909
M129L129deldelCTG---9595126907-26909
M129L129FnonsynCtGTtT91840.92307726907-26909
M129L129FnonsynCtGTtC9170.076923126907-26909
M129L129AnonsynCTGGCT76360.47368426907-26909
M129L129AnonsynCTgGCg76310.40789526907-26909
M129L129AnonsynCTGGCC7650.065789526907-26909
M129L129AnonsynCTGGCA7640.052631626907-26909
M129L129SnonsynCTGTCT75340.45333326907-26909
M129L129SnonsynCTgTCg75270.3626907-26909
M129L129SnonsynCTGTCA7540.053333326907-26909
M129L129SnonsynCTGTCC7540.053333326907-26909
M129L129SnonsynCTGAGT7540.053333326907-26909
M129L129SnonsynCTGAGC7520.026666726907-26909
M129L129RnonsyncTgcGg26150.57692326907-26909
M129L129GnonsynCTGGGT26110.42307726907-26909
M129L129GnonsynCTgGGg2680.30769226907-26909
M129L129RnonsyncTGcGT2670.26923126907-26909
M129L129GnonsynCTGGGC2660.23076926907-26909
M129L129RnonsynCTgAGg2620.076923126907-26909
M129L129RnonsyncTGcGA2620.076923126907-26909
M129L129GnonsynCTGGGA2610.038461526907-26909
M129L129CnonsynCTGTGT21160.76190526907-26909
M129L129CnonsynCTGTGC2150.23809526907-26909
M129L129WnonsynCTgTGg1313126907-26909
M129L129InonsynCtGAtT970.77777826907-26909
M129L129InonsynCtGAtC920.22222226907-26909
M129L129YnonsynCTGTAT430.7526907-26909
M129L129XnonsynCTgTAg420.526907-26909
M129L129XnonsynCTGTGA420.526907-26909
M129L129YnonsynCTGTAC410.2526907-26909
M129L129DnonsynCTGGAT320.66666726907-26909
M129L129HnonsyncTGcAC320.66666726907-26909
M129L129HnonsyncTGcAT310.33333326907-26909
M129L129DnonsynCTGGAC310.33333326907-26909
M129L129del1delctGct-210.526907-26909
M129L129TnonsynCTGACC210.526907-26909
M129L129TnonsynCTGACT210.526907-26909
M129L129del1delcTgc-g210.526907-26909
M129L129del2delcTGc--11126907-26909
M129L129EnonsynCTgGAg11126907-26909
M129L129NnonsynCTGAAT11126907-26909
M129L129KnonsynCTgAAg11126907-26909

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
M129L129LCtgTtg65889565All0.00126
M129L129LctGctA18279565All0.000349
M129L129LctGctT8889565All0.00017
M129L129LctGctC2579565All0.000049
M129L129LCtGTtA59565All0.000001
M129L129LCtgTtg20653658AY.40.003214
M129L129LctGctA15353658AY.40.002389
M129L129LctGctT403658AY.40.000062
M129L129LctGctC183658AY.40.000028
M129L129LCtgTtg14171741B.1.1.70.001269
M129L129LctGctT2441741B.1.1.70.000218
M129L129LctGctC511741B.1.1.70.000046
M129L129LctGctA251741B.1.1.70.000022
M129L129LCtGTtA41741B.1.1.70.000004
M129L129LCtgTtg275289AY.30.002735
M129L129LctGctA9289AY.30.00009
M129L129LctGctC5289AY.30.00005
M129L129LCtgTtg175276B.1.617.20.000659
M129L129LctGctT53276B.1.617.20.0002
M129L129LctGctA29276B.1.617.20.000109
M129L129LctGctC19276B.1.617.20.000072
M129L129LctGctA117244AY.430.000518
M129L129LCtgTtg102244AY.430.000452
M129L129LctGctT20244AY.430.000089
M129L129LctGctC5244AY.430.000022
M129L129LctGctT213213B.1.6180.858871
M129L129MCtgAtg204204All0.000039
M129L129LCtgTtg161179AY.440.00098
M129L129LctGctT10179AY.440.000061
M129L129LctGctC7179AY.440.000043
M129L129LctGctA1179AY.440.000006
M129L129LCtgTtg156174P.10.002458
M129L129LctGctT9174P.10.000142
M129L129LctGctC8174P.10.000126
M129L129LctGctA1174P.10.000016
M129L129LCtgTtg142162B.1.20.00125
M129L129LctGctT13162B.1.20.000114
M129L129LctGctC5162B.1.20.000044
M129L129LctGctA2162B.1.20.000018
M129L129VCtgGtg97154All0.000019
M129L129VCtGGtT44154All0.000008
M129L129VCtGGtC8154All0.000002
M129L129VCtGGtA5154All0.000001
M129L129QcTgcAg134134All0.000026
M129L129LCtgTtg110124AY.250.000662
M129L129LctGctT8124AY.250.000048
M129L129LctGctA3124AY.250.000018
M129L129LctGctC2124AY.250.000012
M129L129LCtGTtA1124AY.250.000006
M129L129LCtgTtg94117AY.1030.000584
M129L129LctGctT15117AY.1030.000093
M129L129LctGctC8117AY.1030.00005
M129L129LCtgTtg104104AY.410.03057
M129L129LCtgTtg95104B.1.1770.001251
M129L129LctGctT8104B.1.1770.000105
M129L129LctGctA1104B.1.1770.000013
M129L129PcTgcCg77100All0.000015
M129L129PcTGcCT18100All0.000003
M129L129PcTGcCA3100All0.000001
M129L129PcTGcCC2100All0
M129L129MCtgAtg9797B.1.1.70.000087
M129L129VCtgGtg4596B.1.1.70.00004
M129L129VCtGGtT4096B.1.1.70.000036
M129L129VCtGGtC896B.1.1.70.000007
M129L129VCtGGtA396B.1.1.70.000003
M129L129delCTG---9595All0.000018
M129L129LCtgTtg7392B.10.000669
M129L129LctGctT1192B.10.000101
M129L129LctGctC592B.10.000046
M129L129LctGctA392B.10.000027
M129L129FCtGTtT8491All0.000016
M129L129FCtGTtC791All0.000001
M129L129QcTgcAg8686AY.430.000381
M129L129LCtgTtg7784B.1.4290.001812
M129L129LctGctA784B.1.4290.000165
M129L129LCtgTtg8080AY.160.030372
M129L129delCTG---8080B.1.177.210.006118
M129L129ACTGGCT3676All0.000007
M129L129ACTgGCg3176All0.000006
M129L129ACTGGCC576All0.000001
M129L129ACTGGCA476All0.000001
M129L129LCtgTtg7476AY.1180.004636
M129L129LctGctA276AY.1180.000125
M129L129SCTGTCT3475All0.000007
M129L129SCTgTCg2775All0.000005
M129L129SCTGAGT475All0.000001
M129L129SCTGTCC475All0.000001
M129L129SCTGTCA475All0.000001
M129L129SCTGAGC275All0
M129L129LCtgTtg6375B.1.5260.001481
M129L129LctGctA1075B.1.5260.000235
M129L129LctGctT275B.1.5260.000047
M129L129SCTGTCT3066B.1.1.70.000027
M129L129SCTgTCg2566B.1.1.70.000022
M129L129SCTGAGT366B.1.1.70.000003
M129L129SCTGTCC366B.1.1.70.000003
M129L129SCTGTCA366B.1.1.70.000003
M129L129SCTGAGC266B.1.1.70.000002
M129L129LCtgTtg5361B.1.10.000961
M129L129LctGctT561B.1.10.000091
M129L129LctGctC261B.1.10.000036
M129L129LctGctA161B.1.10.000018
M129L129ACTGGCT3061B.1.1.70.000027
M129L129ACTgGCg2661B.1.1.70.000023
M129L129ACTGGCC361B.1.1.70.000003
M129L129ACTGGCA261B.1.1.70.000002
M129L129FCtGTtT4653B.1.1.70.000041
M129L129FCtGTtC753B.1.1.70.000006
M129L129LCtgTtg4852AY.39.10.001901
M129L129LctGctC352AY.39.10.000119
M129L129LctGctA152AY.39.10.00004
M129L129LCtgTtg4550AY.1020.001193
M129L129LctGctT550AY.1020.000133
M129L129LCtgTtg4949AY.110.065596
M129L129LCtgTtg3547B.1.1.5190.00139
M129L129LctGctT947B.1.1.5190.000357
M129L129LctGctC247B.1.1.5190.000079
M129L129LctGctA147B.1.1.5190.00004
M129L129LctGctT4144AY.1200.001524
M129L129LCtgTtg344AY.1200.000112
M129L129LCtgTtg4141B.1.4270.00207
M129L129LctGctC2140B.1.1.2140.001165
M129L129LCtgTtg1740B.1.1.2140.000943
M129L129LctGctT140B.1.1.2140.000055
M129L129LctGctA140B.1.1.2140.000055
M129L129PcTgcCg2239B.1.1.70.00002
M129L129PcTGcCT1639B.1.1.70.000014
M129L129PcTGcCA139B.1.1.70.000001
M129L129FCtGTtT3434AY.450.004137
M129L129LCtgTtg2033AY.390.000494
M129L129LctGctT1033AY.390.000247
M129L129LctGctC233AY.390.000049
M129L129LctGctA133AY.390.000025
M129L129LCtgTtg2231AY.200.000855
M129L129LctGctT931AY.200.00035
M129L129LCtgTtg3131B.1.438.10.003325
M129L129LctGctC1430AY.290.000221
M129L129LCtgTtg1030AY.290.000158
M129L129LctGctT430AY.290.000063
M129L129LctGctA230AY.290.000032
M129L129LCtgTtg2530B.1.2340.003299
M129L129LctGctC530B.1.2340.00066
M129L129LCtgTtg1527AY.50.00031
M129L129LctGctT1027AY.50.000206
M129L129LctGctC227AY.50.000041
M129L129RcTgcGg1526All0.000003
M129L129GCTGGGT1126All0.000002
M129L129GCTgGGg826All0.000002
M129L129RcTGcGT726All0.000001
M129L129GCTGGGC626All0.000001
M129L129RcTGcGA226All0
M129L129RCTgAGg226All0
M129L129GCTGGGA126All0
M129L129LCtgTtg2526AY.9.20.000918
M129L129LctGctC126AY.9.20.000037
M129L129LctGctA2226B.1.617.10.002837
M129L129LCtgTtg226B.1.617.10.000258
M129L129LctGctC226B.1.617.10.000258
M129L129LctGctA1925AY.4.20.000412
M129L129LCtgTtg625AY.4.20.00013
M129L129LCtgTtg1324AY.260.000368
M129L129LctGctT1024AY.260.000283
M129L129LctGctA124AY.260.000028
M129L129LCtgTtg2124B.1.1600.000655
M129L129LctGctT224B.1.1600.000062
M129L129LctGctA124B.1.1600.000031
M129L129LCtgTtg2424B.1.177.120.003641
M129L129LCtgTtg2424P.1.140.001147
M129L129LCtgTtg1923B.1.3510.000565
M129L129LctGctT323B.1.3510.000089
M129L129LctGctC123B.1.3510.00003
M129L129CCTGTGT1621All0.000003
M129L129CCTGTGC521All0.000001
M129L129MCtgAtg2020B.10.000183
M129L129GCTGGGT820B.1.1.70.000007
M129L129GCTgGGg620B.1.1.70.000005
M129L129GCTGGGC520B.1.1.70.000004
M129L129GCTGGGA120B.1.1.70.000001
M129L129LCtgTtg1919B.1.6360.127517
M129L129LCtgTtg1618AY.420.000644
M129L129LctGctT118AY.420.00004
M129L129LctGctA118AY.420.00004
M129L129LctGctT1518AY.98.10.000726
M129L129LCtgTtg318AY.98.10.000145
M129L129CCTGTGT1418B.1.1.70.000013
M129L129CCTGTGC418B.1.1.70.000004
M129L129LctGctC1617AY.1210.002165
M129L129LCtgTtg117AY.1210.000135
M129L129LCtgTtg1717AY.3.10.001449
M129L129LCtgTtg1117B.1.1.2220.002244
M129L129LctGctT617B.1.1.2220.001224
M129L129LCtgTtg1417B.1.2580.000932
M129L129LctGctT217B.1.2580.000133
M129L129LctGctA117B.1.2580.000067
M129L129LCtgTtg1616AY.7.20.008949
M129L129LCtgTtg1616B.1.1.2190.08
M129L129QcTgcAg1616B.1.1.70.000014
M129L129LCtgTtg1616B.1.1.750.170213
M129L129LCtgTtg1616B.1.177.820.007637
M129L129LCtgTtg916B.1.2430.000626
M129L129LctGctT716B.1.2430.000487
M129L129MCtgAtg1515AY.440.000091
M129L129LCtgTtg1415B.1.5250.001584
M129L129LctGctC115B.1.5250.000113
M129L129LctGctT1515B.1.5820.00736
M129L129LCtgTtg1014AY.230.000697
M129L129LctGctC214AY.230.000139
M129L129LctGctA214AY.230.000139
M129L129LCtgTtg1414B.1.1.3480.011146
M129L129LCtgTtg1114D.20.000825
M129L129LctGctC314D.20.000225
M129L129WCTgTGg1313All0.000002
M129L129LCtgTtg1213AY.1130.001709
M129L129LctGctT113AY.1130.000142
M129L129LCtgTtg813AY.330.000534
M129L129LctGctT513AY.330.000334
M129L129MCtgAtg1313AY.40.00002
M129L129LctGctT1113AY.450.001339
M129L129LCtgTtg213AY.450.000243
M129L129MCtgAtg1313B.1.10.000236
M129L129RcTGcGT613B.1.1.70.000005
M129L129RcTgcGg513B.1.1.70.000004
M129L129RCTgAGg113B.1.1.70.000001
M129L129RcTGcGA113B.1.1.70.000001
M129L129LCtgTtg1313B.1.177.160.008638
M129L129LCtgTtg513C.370.00058
M129L129LctGctA413C.370.000464
M129L129LctGctT313C.370.000348
M129L129LctGctC113C.370.000116
M129L129LCtgTtg1212A.290.06383
M129L129LctGctA512AY.1000.00023
M129L129LCtgTtg512AY.1000.00023
M129L129LctGctT112AY.1000.000046
M129L129LctGctC112AY.1000.000046
M129L129LCtgTtg1212AY.1050.007717
M129L129LCtgTtg912AY.470.00028
M129L129LctGctT212AY.470.000062
M129L129LctGctC112AY.470.000031
M129L129WCTgTGg1212B.1.1.70.000011
M129L129LCtgTtg1212P.1.10.003812
M129L129LCtgTtg911AY.60.00037
M129L129LctGctT211AY.60.000082
M129L129LCtgTtg1111B.1.36.180.004622
M129L129MCtgAtg1111B.1.617.20.000041
M129L129LCtgTtg1111B.1.6280.003876
M129L129LCtgTtg1111B.1.6370.000804
M129L129LCtgTtg910AY.350.002097
M129L129LctGctC110AY.350.000233
M129L129LCtgTtg1010AY.46.60.000722
M129L129LCtgTtg1010B.1.1.2860.028986
M129L129LCtgTtg1010B.1.3110.002746
M129L129LctGctT710P.1.120.003388
M129L129LCtgTtg210P.1.120.000968
M129L129LctGctA110P.1.120.000484
M129L129ICtGAtT79All0.000001
M129L129ICtGAtC29All0
M129L129LCtgTtg59AY.1110.000916
M129L129LctGctC29AY.1110.000366
M129L129LctGctT29AY.1110.000366
M129L129LctGctT49AY.610.000419
M129L129LctGctC39AY.610.000314
M129L129LCtgTtg29AY.610.00021
M129L129LCtgTtg89AY.7.10.000902
M129L129LctGctT19AY.7.10.000113
M129L129LCtgTtg99B.1.1.3020.018672
M129L129delCTG---99B.1.1.70.000008
M129L129LCtgTtg99B.1.5960.000784
M129L129LCtgTtg68AY.1190.000212
M129L129LctGctT28AY.1190.000071
M129L129VCtgGtg68AY.250.000036
M129L129VCtGGtA18AY.250.000006
M129L129VCtGGtT18AY.250.000006
M129L129LCtgTtg48AY.4.40.001637
M129L129LctGctT38AY.4.40.001227
M129L129LctGctC18AY.4.40.000409
M129L129QcTgcAg88AY.440.000049
M129L129LCtgTtg88B.1.2210.000568
M129L129LCtgTtg78Q.80.001154
M129L129LctGctT18Q.80.000165
M129L129MCtgAtg77AY.1030.000043
M129L129LCtgTtg67AY.1170.000507
M129L129LctGctT17AY.1170.000085
M129L129LCtgTtg67AY.460.000624
M129L129LctGctC17AY.460.000104
M129L129LctGctC67AY.530.001725
M129L129LctGctA17AY.530.000288
M129L129LCtgTtg77AY.590.003708
M129L129LCtgTtg67AY.750.000336
M129L129LctGctC17AY.750.000056
M129L129LctGctT37AY.90.000203
M129L129LctGctA27AY.90.000135
M129L129LCtgTtg27AY.90.000135
M129L129LCtgTtg67AY.980.000474
M129L129LctGctC17AY.980.000079
M129L129LCtgTtg56AY.740.000578
M129L129LctGctA16AY.740.000116
M129L129VCtgGtg56B.1.10.000091
M129L129VCtGGtT16B.1.10.000018
M129L129ICtGAtT46B.1.1.70.000004
M129L129ICtGAtC26B.1.1.70.000002
M129L129LCtgTtg66B.1.3990.011605
M129L129VCtgGtg66B.1.617.20.000023
M129L129VCtgGtg66B.130.272727
M129L129LCtgTtg66P.1.150.001394
M129L129LCtgTtg55AY.120.00158
M129L129PcTgcCg55AY.420.000201
M129L129LCtgTtg35AY.850.001282
M129L129LctGctC25AY.850.000854
M129L129LctGctC25B0.000256
M129L129LctGctT25B0.000256
M129L129LCtgTtg15B0.000128
M129L129LCtgTtg55B.1.1.280.001556
M129L129LctGctC55B.1.1.3110.001791
M129L129LCtgTtg45B.1.177.570.001124
M129L129LctGctT15B.1.177.570.000281
M129L129LCtgTtg55B.1.177.770.003631
M129L129LCtgTtg55B.1.177.860.000917
M129L129LCtgTtg55B.1.360.00073
M129L129LCtgTtg45B.1.36.290.002069
M129L129LctGctC15B.1.36.290.000517
M129L129LCtgTtg45B.1.4990.004202
M129L129LctGctC15B.1.4990.00105
M129L129LCtgTtg45B.1.6210.000354
M129L129LctGctA15B.1.6210.000089
M129L129LCtgTtg55C.160.005302
M129L129LCtgTtg55R.10.00045
M129L129LCtgTtg44A.2.50.001996
M129L129YCTGTAT34All0.000001
M129L129XCTgTAg24All0
M129L129XCTGTGA24All0
M129L129YCTGTAC14All0
M129L129LCtgTtg44AY.1090.002959
M129L129LCtgTtg44AY.130.000644
M129L129VCtgGtg44AY.230.000279
M129L129LCtgTtg34AY.360.000445
M129L129LctGctT14AY.360.000148
M129L129LCtgTtg24AY.4.50.000215
M129L129LctGctA14AY.4.50.000107
M129L129LctGctT14AY.4.50.000107
M129L129LCtgTtg34AY.840.001312
M129L129LctGctC14AY.840.000437
M129L129LCtgTtg34AY.9.10.000251
M129L129LctGctT14AY.9.10.000084
M129L129LCtgTtg34AY.910.002191
M129L129LctGctT14AY.910.00073
M129L129PcTgcCg44B.10.000037
M129L129ACTGGCT24B.10.000018
M129L129SCTGTCT24B.10.000018
M129L129GCTGGGT24B.10.000018
M129L129SCTgTCg14B.10.000009
M129L129ACTgGCg14B.10.000009
M129L129GCTGGGC14B.10.000009
M129L129ACTGGCC14B.10.000009
M129L129SCTGTCC14B.10.000009
M129L129GCTgGGg14B.10.000009
M129L129LCtgTtg24B.1.1.250.001137
M129L129LctGctT24B.1.1.250.001137
M129L129LCtgTtg44B.1.1.3060.001754
M129L129LCtgTtg44B.1.1.330.001684
M129L129YCTGTAT34B.1.1.70.000003
M129L129XCTgTAg24B.1.1.70.000002
M129L129XCTGTGA24B.1.1.70.000002
M129L129YCTGTAC14B.1.1.70.000001
M129L129LCtgTtg44B.1.177.810.000757
M129L129LCtgTtg44B.1.4000.001716
M129L129LCtgTtg44B.1.5090.003463
M129L129MCtgAtg44B.1.6370.000292
M129L129VCtgGtg24P.10.000032
M129L129VCtGGtA14P.10.000016
M129L129VCtGGtT14P.10.000016
M129L129LctGctC24Q.10.000253
M129L129LCtgTtg24Q.10.000253
M129L129DCTGGAT23All0
M129L129HcTGcAC23All0
M129L129DCTGGAC13All0
M129L129HcTGcAT13All0
M129L129LCtgTtg33AY.1060.001005
M129L129LCtgTtg33AY.1080.003308
M129L129LCtgTtg33AY.140.000264
M129L129PcTgcCg23AY.330.000134
M129L129PcTGcCC13AY.330.000067
M129L129LCtgTtg13AY.4.2.10.000149
M129L129LctGctT13AY.4.2.10.000149
M129L129LctGctC13AY.4.2.10.000149
M129L129VCtgGtg33AY.440.000018
M129L129PcTgcCg23AY.440.000012
M129L129PcTGcCC13AY.440.000006
M129L129PcTgcCg33AY.50.000062
M129L129LCtgTtg33AY.5.40.00083
M129L129LCtgTtg33AY.560.004815
M129L129LCtgTtg33AY.600.002814
M129L129LCtgTtg33AY.620.001307
M129L129LctGctT23AY.70.000392
M129L129LctGctA13AY.70.000196
M129L129LCtgTtg33AY.75.10.000541
M129L129LCtgTtg23AY.99.20.000184
M129L129LctGctT13AY.99.20.000092
M129L129CCTGTGT23B.10.000018
M129L129CCTGTGC13B.10.000009
M129L129LCtgTtg33B.1.1.1740.010135
M129L129LctGctT23B.1.1.1980.002937
M129L129LCtgTtg13B.1.1.1980.001468
M129L129LCtgTtg33B.1.1.3170.001235
M129L129LCtgTtg33B.1.1.4160.002715
M129L129RcTgcGg33B.1.1.570.034483
M129L129DCTGGAT23B.1.1.70.000002
M129L129DCTGGAC13B.1.1.70.000001
M129L129LctGctT33B.1.1690.044776
M129L129LctGctA33B.1.177.150.001893
M129L129LCtgTtg33B.1.177.320.004049
M129L129MCtgAtg33B.1.20.000026
M129L129LCtgTtg33B.1.2360.00616
M129L129LCtgTtg33B.1.258.40.010345
M129L129LCtgTtg33B.1.5300.021429
M129L129LCtgTtg33B.1.5750.00091
M129L129LctGctA33B.1.619.10.001924
M129L129LctGctT23B.1.621.10.001012
M129L129LCtgTtg13B.1.621.10.000506
M129L129PcTGcCT13P.10.000016
M129L129ACTGGCA13P.10.000016
M129L129ACTgGCg13P.10.000016
M129L129ACTGGCT13P.10.000016
M129L129PcTgcCg13P.10.000016
M129L129PcTGcCA13P.10.000016
M129L129LCtgTtg33P.1.170.000485
M129L129LCtgTtg12A0.000387
M129L129LctGctT12A0.000387
M129L129TCTGACC12All0
M129L129del1ctGct-12All0
M129L129TCTGACT12All0
M129L129del1cTgc-g12All0
M129L129QcTgcAg22AY.1030.000012
M129L129LctGctT22AY.1100.000225
M129L129LctGctT12AY.1160.000287
M129L129LctGctA12AY.1160.000287
M129L129PcTgcCg22AY.120.10.000642
M129L129QcTgcAg22AY.140.000176
M129L129LctGctC22AY.16.10.00094
M129L129PcTgcCg22AY.230.000139
M129L129MCtgAtg22AY.250.000012
M129L129ACTGGCT12AY.250.000006
M129L129SCTGTCT12AY.250.000006
M129L129ACTGGCA12AY.250.000006
M129L129SCTGTCA12AY.250.000006
M129L129LctGctT12AY.270.000065
M129L129LCtgTtg12AY.270.000065
M129L129MCtgAtg22AY.30.00002
M129L129VCtgGtg22AY.30.00002
M129L129LCtgTtg22AY.300.000791
M129L129LCtgTtg22AY.320.001065
M129L129RcTgcGg22AY.430.000009
M129L129LCtgTtg22AY.46.40.000329
M129L129LCtgTtg22AY.46.50.000397
M129L129LCtgTtg22AY.540.000191
M129L129LCtgTtg12AY.700.000209
M129L129LctGctT12AY.700.000209
M129L129QcTgcAg22AY.750.000112
M129L129LCtgTtg22AY.760.009662
M129L129QcTgcAg22AY.840.000875
M129L129PcTgcCg22B0.000256
M129L129delCTG---22B.10.000018
M129L129RcTgcGg12B.1.10.000018
M129L129PcTGcCT12B.1.10.000018
M129L129GCTgGGg12B.1.10.000018
M129L129GCTGGGT12B.1.10.000018
M129L129RcTGcGT12B.1.10.000018
M129L129ACTGGCT12B.1.10.000018
M129L129ACTgGCg12B.1.10.000018
M129L129PcTgcCg12B.1.10.000018
M129L129LCtgTtg22B.1.1.1700.002494
M129L129LCtgTtg22B.1.1.2070.002364
M129L129LCtgTtg22B.1.1.2160.001781
M129L129LCtgTtg22B.1.1.3160.00185
M129L129LCtgTtg22B.1.1.3180.000604
M129L129LCtgTtg22B.1.1.370.000386
M129L129LCtgTtg22B.1.1.4260.071429
M129L129TCTGACT12B.1.1.70.000001
M129L129TCTGACC12B.1.1.70.000001
M129L129LCtgTtg22B.1.1260.002551
M129L129LCtgTtg22B.1.130.004751
M129L129MCtgAtg22B.1.1470.001512
M129L129LCtgTtg22B.1.1490.006849
M129L129LCtgTtg22B.1.160.290.008439
M129L129LctGctT12B.1.177.210.000076
M129L129LCtgTtg12B.1.177.210.000076
M129L129LCtgTtg22B.1.177.440.001038
M129L129VCtgGtg22B.1.2210.000142
M129L129LCtgTtg22B.1.2400.000431
M129L129VCtgGtg22B.1.2430.000139
M129L129LctGctC22B.1.258.140.001961
M129L129LCtgTtg22B.1.2980.004228
M129L129VCtgGtg22B.1.3510.000059
M129L129MCtgAtg22B.1.360.000292
M129L129LCtgTtg22B.1.36.10.002281
M129L129LCtgTtg22B.1.36.80.002
M129L129LCtgTtg22B.1.5760.001813
M129L129PcTgcCg22B.1.5760.001813
M129L129ACTGGCT12B.1.5760.000907
M129L129VCtGGtT12B.1.5760.000907
M129L129SCTgTCg12B.1.5760.000907
M129L129VCtgGtg12B.1.5760.000907
M129L129SCTGTCT12B.1.5760.000907
M129L129ACTgGCg12B.1.5760.000907
M129L129PcTGcCA12B.1.617.20.000004
M129L129PcTgcCg12B.1.617.20.000004
M129L129LCtgTtg22C.350.001548
M129L129LCtgTtg22C.37.10.005236
M129L129PcTgcCg22D.20.00015
M129L129VCtgGtg22N.50.003534
M129L129LCtgTtg11A.10.000282
M129L129LCtgTtg11A.2.40.003367
M129L129LCtgTtg11A.2.5.30.010309
M129L129LCtgTtg11AD.10.004115
M129L129LCtgTtg11AD.20.000219
M129L129NCTGAAT11All0
M129L129del2cTGc--11All0
M129L129ECTgGAg11All0
M129L129KCTgAAg11All0
M129L129LCtgTtg11AW.10.003049
M129L129PcTgcCg11AY.1000.000046
M129L129VCtgGtg11AY.1000.000046
M129L129PcTgcCg11AY.1020.000027
M129L129ACTgGCg11AY.1030.000006
M129L129PcTgcCg11AY.1030.000006
M129L129LCtgTtg11AY.1040.001984
M129L129ACTGGCC11AY.1130.000142
M129L129del1cTgc-g11AY.1190.000035
M129L129MCtgAtg11AY.1190.000035
M129L129PcTgcCg11AY.120.000316
M129L129RcTgcGg11AY.120.10.000321
M129L129QcTgcAg11AY.120.10.000321
M129L129LCtgTtg11AY.120.10.000321
M129L129LCtgTtg11AY.120.2.10.000498
M129L129PcTgcCg11AY.16.10.00047
M129L129LCtgTtg11AY.180.010101
M129L129QcTgcAg11AY.200.000039
M129L129LCtgTtg11AY.23.10.000417
M129L129RcTGcGA11AY.250.000006
M129L129FCtGTtT11AY.250.000006
M129L129delCTG---11AY.260.000028
M129L129PcTgcCg11AY.30.00001
M129L129HcTGcAC11AY.330.000067
M129L129LCtgTtg11AY.340.000097
M129L129PcTgcCg11AY.340.000097
M129L129PcTgcCg11AY.360.000148
M129L129MCtgAtg11AY.390.000025
M129L129PcTgcCg11AY.40.000002
M129L129QcTgcAg11AY.40.000002
M129L129VCtgGtg11AY.40.000002
M129L129LctGctC11AY.4.10.000737
M129L129PcTgcCg11AY.4.50.000107
M129L129LCtgTtg11AY.400.000964
M129L129PcTgcCg11AY.400.000964
M129L129PcTgcCg11AY.430.000004
M129L129MCtgAtg11AY.430.000004
M129L129HcTGcAC11AY.440.000006
M129L129PcTgcCg11AY.470.000031
M129L129LCtgTtg11AY.490.003195
M129L129VCtgGtg11AY.5.30.000337
M129L129PcTgcCg11AY.5.40.000277
M129L129LctGctT11AY.520.000814
M129L129LCtgTtg11AY.640.000595
M129L129PcTgcCg11AY.650.000533
M129L129LCtgTtg11AY.680.000274
M129L129LCtgTtg11AY.710.000475
M129L129MCtgAtg11AY.750.000056
M129L129PcTgcCg11AY.75.10.00018
M129L129LCtgTtg11AY.770.001127
M129L129PcTgcCg11AY.870.000833
M129L129LCtgTtg11AY.9.2.10.001976
M129L129LctGctC11AY.900.000684
M129L129LCtgTtg11AY.920.000287
M129L129MCtgAtg11AY.930.000273
M129L129LCtgTtg11AY.930.000273
M129L129PcTgcCg11AY.960.002075
M129L129MCtgAtg11AY.99.20.000092
M129L129LCtgTtg11AZ.20.000821
M129L129MCtgAtg11B0.000128
M129L129ICtGAtT11B0.000128
M129L129WCTgTGg11B.10.000009
M129L129VCtgGtg11B.10.000009
M129L129QcTgcAg11B.10.000009
M129L129QcTgcAg11B.1.10.000018
M129L129LctGctT11B.1.1.1180.010204
M129L129LCtgTtg11B.1.1.120.007463
M129L129LCtgTtg11B.1.1.1570.000913
M129L129LCtgTtg11B.1.1.1610.003534
M129L129LCtgTtg11B.1.1.1630.007634
M129L129del2cTGc--11B.1.1.1740.003378
M129L129LCtgTtg11B.1.1.1760.000439
M129L129LCtgTtg11B.1.1.1890.001513
M129L129LCtgTtg11B.1.1.1920.002309
M129L129LCtgTtg11B.1.1.2250.007194
M129L129LCtgTtg11B.1.1.2360.006897
M129L129LCtgTtg11B.1.1.2630.001558
M129L129LCtgTtg11B.1.1.2650.003155
M129L129LCtgTtg11B.1.1.2730.006757
M129L129LctGctC11B.1.1.2900.018182
M129L129LCtgTtg11B.1.1.2980.000862
M129L129LCtgTtg11B.1.1.3090.005848
M129L129PcTgcCg11B.1.1.3350.012987
M129L129LCtgTtg11B.1.1.3690.000446
M129L129LCtgTtg11B.1.1.4000.05
M129L129delCTG---11B.1.1.4200.001006
M129L129LCtgTtg11B.1.1.4340.000349
M129L129QcTgcAg11B.1.1.5190.00004
M129L129LCtgTtg11B.1.1.5210.005348
M129L129LCtgTtg11B.1.1.5260.003546
M129L129LCtgTtg11B.1.1.610.008772
M129L129LCtgTtg11B.1.1.630.000386
M129L129KCTgAAg11B.1.1.70.000001
M129L129ECTgGAg11B.1.1.70.000001
M129L129NCTGAAT11B.1.1.70.000001
M129L129HcTGcAT11B.1.1.70.000001
M129L129LCtgTtg11B.1.1.700.000341
M129L129LCtgTtg11B.1.1.830.00271
M129L129LctGctC11B.1.1110.001175
M129L129LctGctT11B.1.1150.021739
M129L129LctGctC11B.1.1200.007692
M129L129LctGctT11B.1.160.170.001701
M129L129MCtgAtg11B.1.1770.000013
M129L129LCtgTtg11B.1.177.100.000878
M129L129LCtgTtg11B.1.177.30.007634
M129L129LCtgTtg11B.1.177.310.011494
M129L129FCtGTtT11B.1.177.320.00135
M129L129LCtgTtg11B.1.177.40.000211
M129L129LCtgTtg11B.1.177.420.000894
M129L129LCtgTtg11B.1.177.460.000918
M129L129RcTgcGg11B.1.177.500.004695
M129L129LCtgTtg11B.1.177.600.000218
M129L129LctGctA11B.1.177.620.001192
M129L129LCtgTtg11B.1.177.830.001481
M129L129LCtgTtg11B.1.1890.004292
M129L129PcTgcCg11B.1.20.000009
M129L129del1ctGct-11B.1.20.000009
M129L129VCtgGtg11B.1.20.000009
M129L129RCTgAGg11B.1.20.000009
M129L129SCTGAGT11B.1.20.000009
M129L129ICtGAtT11B.1.20.000009
M129L129LCtgTtg11B.1.2120.016667
M129L129MCtgAtg11B.1.2210.000071
M129L129LctGctA11B.1.2220.001692
M129L129QcTgcAg11B.1.2430.00007
M129L129delCTG---11B.1.258.110.000396
M129L129LCtgTtg11B.1.258.170.000104
M129L129LctGctC11B.1.258.30.001675
M129L129LCtgTtg11B.1.258.70.001912
M129L129LctGctT11B.1.2650.001271
M129L129VCtgGtg11B.1.2790.000514
M129L129LCtgTtg11B.1.30.002618
M129L129MCtgAtg11B.1.3010.005917
M129L129LctGctT11B.1.3010.005917
M129L129ICtGAtT11B.1.3010.005917
M129L129LCtgTtg11B.1.3240.001605
M129L129LctGctC11B.1.3360.002439
M129L129PcTgcCg11B.1.351.20.000303
M129L129PcTgcCg11B.1.36.290.000517
M129L129LctGctT11B.1.36.360.000602
M129L129LCtgTtg11B.1.3670.000792
M129L129MCtgAtg11B.1.3690.000285
M129L129LCtgTtg11B.1.3750.00082
M129L129LctGctA11B.1.3800.006623
M129L129MCtgAtg11B.1.3910.001127
M129L129LctGctT11B.1.3910.001127
M129L129LCtgTtg11B.1.4040.001302
M129L129LCtgTtg11B.1.4090.000781
M129L129PcTgcCg11B.1.4260.001009
M129L129LCtgTtg11B.1.4260.001009
M129L129QcTgcAg11B.1.4270.00005
M129L129delCTG---11B.1.4270.00005
M129L129PcTgcCg11B.1.4290.000024
M129L129QcTgcAg11B.1.4290.000024
M129L129LCtgTtg11B.1.4360.001029
M129L129VCtgGtg11B.1.438.10.000107
M129L129LctGctC11B.1.4530.003236
M129L129RcTgcGg11B.1.466.20.000391
M129L129LCtgTtg11B.1.4920.007042
M129L129PcTgcCg11B.1.5250.000113
M129L129VCtgGtg11B.1.5260.000024
M129L129LCtgTtg11B.1.5270.003704
M129L129LCtgTtg11B.1.5440.006024
M129L129MCtgAtg11B.1.5460.003704
M129L129LCtgTtg11B.1.5460.003704
M129L129LctGctA11B.1.5610.000397
M129L129LCtgTtg11B.1.5640.000426
M129L129LCtgTtg11B.1.5740.002151
M129L129FCtGTtT11B.1.5740.002151
M129L129LCtgTtg11B.1.575.10.002439
M129L129QcTgcAg11B.1.5760.000907
M129L129FCtGTtT11B.1.5760.000907
M129L129LctGctC11B.1.5770.000687
M129L129LCtgTtg11B.1.5870.001898
M129L129LCtgTtg11B.1.5950.000261
M129L129VCtgGtg11B.1.5960.000087
M129L129LctGctT11B.1.596.10.009346
M129L129LCtgTtg11B.1.6090.000479
M129L129QcTgcAg11B.1.617.20.000004
M129L129LctGctT11B.1.6230.000536
M129L129QcTgcAg11B.1.9.40.006135
M129L129LCtgTtg11B.180.043478
M129L129LCtgTtg11B.30.000831
M129L129QcTgcAg11B.550.00295
M129L129PcTgcCg11B.60.00091
M129L129QcTgcAg11P.10.000016
M129L129RcTgcGg11P.1.10.000318
M129L129QcTgcAg11P.1.160.000374
M129L129LctGctT11P.1.40.000977
M129L129LCtgTtg11P.20.000187
M129L129QcTgcAg11Q.30.000145

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.